KEGG   Oncorhynchus mykiss (rainbow trout): 110496847
Entry
110496847         CDS       T07259                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein isoform X1
  KO
K12857  Prp8 binding protein
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110496847 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:omy03041]
    110496847 (snrnp40)
Spliceosome [BR:omy03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    110496847 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    110496847 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd EIF3I NBCH_WD40 WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_SCAP WD40_RFWD3 WDR90_beta-prop_4th Beta-prop_WDR75_2nd Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_IFT140_2nd WD40_like
Other DBs
NCBI-GeneID: 110496847
NCBI-ProteinID: XP_036809040
Ensembl: ENSOMYG00000041070
LinkDB
Position
18:complement(52558640..52563739)
AA seq 272 aa
MKGVERCQRKQTKRTRKKMQQPKTVCVCMENFFNEWGRDVFIPGHTRAQVCPISLTTLPD
PPTNILLRKTRRKNKADGVRGSSQMGETLQIQLWDIRKKGAVHTFQNTYQVLAVTFNDTS
DQILSGGIDNDIKVWDLRQNKLVYSMHGHGDSLTGLSLSSEGSYLLSNSMDNTVRIWDVR
PFAPKERCVKIFQGNIHNFEKNLLRCSWSADGSKIAAGSADRFVYVWDTTSRRILYKLPG
HAGSVNEVAFHPEEPIVLSGASDKRLYMGEIQ
NT seq 819 nt   +upstreamnt  +downstreamnt
atgaagggtgttgaaaggtgccaacgcaaacaaacaaaacggacacgcaaaaaaatgcaa
caaccaaaaacagtgtgtgtctgcatggagaatttcttcaatgaatggggaagagatgta
tttatcccgggacacacccgggcccaggtgtgtcccatttctctgacgaccctcccggat
ccgcccaccaacatcctattaaggaaaacgaggagaaagaataaggcagacggagtgaga
gggtcgtcacaaatgggagaaactctccaaatacagctgtgggacatccgtaagaagggg
gcggtccatacgttccaaaacacctaccaggtgttggctgtcacattcaacgacaccagc
gaccagatcctgtctgggggcatcgacaatgacatcaaggtgtgggacctgaggcagaat
aagctggtctacagtatgcatggtcatggtgattctctgactggactcagcctgagctca
gaggggtcctacctcctttccaactccatggacaacacagtgcgtatttgggacgtccgt
ccgttcgctcccaaggagaggtgtgtgaagatattccaggggaacattcacaactttgag
aagaaccttctgaggtgttcctggtccgctgacggcagcaagattgcagcaggctcagcc
gacaggtttgtatatgtgtgggacaccacgtctcgtaggatcctgtacaagctgccaggc
catgctgggtcagtcaatgaggtcgccttccaccctgaggagcctattgtcctctctggt
gccagtgacaagagactctacatgggagagattcagtag

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