Oncorhynchus mykiss (rainbow trout): 110496962
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Entry
110496962 CDS
T07259
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110496962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110496962
Membrane trafficking [BR:
omy04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
110496962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_Vps41
zf-RING_UBOX
zf-RING_5
zf_RING_Vps8_fungal
zf-RING_2
ANAPC4_WD40
zf-RING_11
EIF3I
Prok-RING_1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
110496962
NCBI-ProteinID:
XP_036837869
LinkDB
All DBs
Position
7:982188..1101045
Genome browser
AA seq
1449 aa
AA seq
DB search
MSESPDTRSLVSASSQLNLMEIDTIDDKEFDIPQVDTPPTLESILNEPEDEEEPFILEDT
CLLNTENIDAHSCETSSLASSDSGDRTHLKRKRKTVELSTTVHGSVLRHSILKGISAQIV
SAADKVDAGLPTAVTVSGVIVVGTSHGLALVFGKDLNQALRLCLGSTATGAEYGAVSALS
INHDCTRLLCGFAKGHITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGG
SVFELAFRRLMGMRTCESRCLFSGSKGEVCNVEPLLTAPDLKDHPITQYSLLAMASLTKI
LVIGLKPSLKVWMTFPYGKTDPTSVPQLAWQFVPVQKVVNPVLAFCRGDTVHFLLVKKDE
TGTIHVIKQRQLQLNCDIISLNWINSRTLVVMDSGEKLRVVDRPSQEELESLDVAEVQLV
YNSSHFKSLATGGNVSQALALVGEKACYQSVCSYTGQMVLLGTKSAHILTLRNWRERVDC
LLKQERFVEALSLAWSFHEGTAKAVLGLFGDPAKRKGVVADKMIEILFQYVERSVKKCPE
HGKIQVMEQHFQDMVPVMVDYCLQLQRTDLLFNQLYTRLVENCVARGVFLESLEPYIVSE
RLGCVTAPVMRDLLTHLQDNNMMDSVENCLIHLDITSLDIQQVVQMCWDNQLYDAMIYVF
NRGMNDYITPMEKLFQVIGPPLREGRALTDEQVVMGNKLLVYISCSLAGRAYPLGDIPED
LVSQVKNQVFEFLIRLHSAEAGQEEELYPYIRTLVHFDTPEFLNVLALVSQVWETLQKTT
TTPQRTTSTTPPTQGEVSTSLQTQLVSQHTLEDFKNDKQALEYQQRIVDILLKVMVENSD
FTPSQVGCLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCSPDDDTRHTERQQVLLELLQV
GGVIQFDEGRLLGLAEKAEFYQICEFLYEQNHLYDKILDCYLRDPLRKEEIFNYIHNLLS
MPGYSSEEKHCVWEKALLHIAELVTLDPAKSADLVAMHFPEEVRPIITRLQDDHLVFQFL
RCLLDQSATSREGPHPQPLLRLSPDLHELHIGLLCRFTPRQLTDFLKASQDYRLEEAVQI
TEQYQVHEATSYLLEKKGDSHGAFQVLLKTLKDKLGAVTSEKRSEEEGETGREEESPLQR
VEGSLGDIIALCHRSSQSLNQEQRGVLWFPLLEAMMSPQKLLKGPDTRTTSEVLKELTMK
VLNSMSSFIPLPAIIQRILQDPVYGKGKLAEIQGLILGMLETFNYEQTLLETTTSLLNHD
LHWSLSHLRAAVSRGLHPRQDHCNICLQQYRRRQDSPDDIIIFSCGHLYHCQCLQRKGSG
HAEPRLLQVWSCYKCISSQRGRGGDRVTTETGRGRSTSLAQTNVMSREAGEDGKKVFAET
TLDPQQSQSWDQLRCLYRGPSRLAILSEISHCHGNEKAGLLNPSQPGTGSIFHSENFQLK
LSPPPSVEE
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaatcaccagatacacgcagtttggtttctgcgtcatcccagctcaatttaatg
gaaatagatacgatcgacgataaagagtttgacattccccaagttgacaccccgcctacc
ctggagagcatcctgaatgagcctgaggatgaggaggagcccttcatcctggaggacacg
tgtctgctgaacacagagaacatcgacgcccactcctgtgagacctcctcactggccagc
tccgacagcggtgaccgcacacacctcaaacggaagaggaagacagtggagctcagcact
acagtccatggctctgtgctccgacacagcatcctgaaaggcatctctgctcagatagtc
tcagccgctgacaaagtagatgctggactgccaactgcagtaactgtgtctggtgtgatc
gtagtgggaacgtctcatggcctggctctagtgtttggaaaagatctaaaccaggctctc
cgtttgtgcttgggaagcacggcgacaggggcggagtacggcgccgtctccgccctcagc
atcaaccacgactgcacccgcctgctctgtggcttcgccaagggacatatcaccatgtgg
gatctggccaatgggaagcttctgcgaaccattaccgacgcccacccacccggcaccgcc
atcttacatgtcaagttcaccgatgaccctacgctggcagtgtgcaacgacagcggtggc
tctgtgtttgagctggctttcaggaggttgatggggatgcgtacatgtgagtctcgttgt
ctgttcagtggctctaagggagaggtgtgtaatgtggagcctctcctcaccgccccggac
ctgaaggatcaccccatcacacagtactctctcctggccatggcctctcttactaagatt
ctagtgatcggactgaagccttctctcaaagtgtggatgacatttccctatggcaagaca
gacccgaccagtgttccccagctggcctggcagtttgtccccgttcagaaggtggtcaac
cccgtcctggcattctgcagaggagacaccgtacacttcctgctggtgaagaaggatgag
accggaaccatccatgtcatcaagcaaagacagctgcagctgaactgtgacatcatcagt
ctgaattggatcaacagtcgtaccctggtggtgatggacagcggggagaagctgcgtgtg
gtggaccgacccagccaggaggagctggagagcttggacgtggctgaggtgcagctggtc
tacaacagcagccattttaaatcgctggcaacggggggaaacgtcagccaggcactggcc
ctagtaggagagaaggcctgctaccagtctgtctgcagctacacaggacagatggtgtta
ctggggaccaagtcagcccacatcctgactctgaggaactggagggagcgggtggactgt
ctgttgaaacaggaacgttttgttgaagctctgtccttggcctggtccttccatgagggc
accgccaaggctgtactggggctgtttggcgacccagcaaagaggaaaggtgtagtggca
gacaagatgattgagattctgttccagtatgtggagcgctcagtgaagaaatgtccagaa
cacggcaagatacaggtcatggaacagcatttccaggacatggtgcctgtcatggtagat
tactgtctgcagctgcagaggacggacctactgtttaaccagctgtatacccgcctggtg
gagaactgtgtggctcggggggtcttcctggagagtttggaaccctacatcgtgtcggag
cgtctgggctgtgtgaccgctcccgtcatgagagacctgctgacccacctacaggataac
aacatgatggacagtgtagagaactgtctgatacatctggacatcaccagcctcgacata
caacaggtggtccagatgtgttgggacaaccagctgtatgatgccatgatctacgtgttc
aacaggggaatgaatgactacatcacccctatggagaaactcttccaggtcattggcccc
ccgctgagagaaggcagggccctcacagatgaacaggtggtgatgggtaacaagctgctc
gtttatatcagctgctctctggcaggccgggcctatccactaggagacatcccagaggac
ctggtgtctcaagtcaagaaccaggtgtttgagttcctgatcaggctccactctgcggag
gcgggtcaggaggaggagttgtacccttacatcagaaccctggtccacttcgacacacca
gagttcctcaacgttctggccctggtgagccaagtctgggaaacactacagaaaactaca
accacacctcagagaactacaagtacaactccacccacacagggagaggtctctacaagt
ctacagacacagctggtcagtcaacatacgttggaggactttaagaatgacaagcaggct
ctggaataccagcagaggattgtagacattttactgaaggtgatggtggagaacagtgac
ttcactccctctcaggtgggctgtctgtttaccttcctggcccgccaactggccaaacct
gacaacacactcttcgtcaacaggaagctcttcgatcaggttctggagttcctgtgtagt
ccagacgacgacaccagacacacagagagacaacaggtgctgttggaactgctgcaggtg
ggaggtgtgatacagtttgatgagggacgactactgggactggctgagaaggcagagttc
taccagatctgtgagtttctgtatgagcagaatcatctgtatgataagattctggactgc
tacctcagagaccctctgagaaaggaagagatctttaactacatccacaacctgctgtcc
atgcctggctacagctcagaggagaaacactgtgtctgggagaaggccctgctgcacatt
gcggagctggtgacccttgaccctgccaagtcagctgacctggtggccatgcatttccct
gaggaagtacgacccatcatcaccagactacaggatgatcacctagtgttccagttcctg
aggtgtcttttggaccagagtgctacctccagggaaggccctcatccccagcctctccta
agactgagccccgacctgcatgagctccacatcggcctgctgtgtcgcttcactccccga
cagctcactgacttcctcaaggcctctcaggactacaggctagaggaggccgtccagata
acagaacagtaccaggtccatgaagctacatcctatctgttggaaaagaaaggtgattct
catggagccttccaggtcctgctgaagacgctgaaggacaaactcggcgctgtcacctca
gagaaaaggagtgaagaggagggggagaccgggagggaggaagagagtccactgcagaga
gtggaggggtcattgggtgacatcatcgctctgtgtcacaggagctcccagagtctcaac
caagaacagagaggggtgctgtggttccctctgctagaagctatgatgtcgccacagaag
ctgctcaagggaccggacacacgcactacatcagaggtattgaaggagctcaccatgaag
gtcctgaacagtatgagtagcttcatccccctgcctgctatcatccagcgcattctacag
gaccctgtgtatggtaaaggaaagttggctgagatacaaggccttattctgggtatgctg
gagaccttcaactatgaacagacgttactggagacgaccaccagtctgttgaaccatgac
ctccactggtccctgtctcacctgcgagcggcggtcagcagggggctccacccccgtcag
gaccactgtaacatctgcctgcagcagtacaggagacgtcaggacagcccagatgacatc
atcatattcagctgcggccacctgtaccactgccagtgtctgcagaggaaggggagtggc
cacgcggagcccaggttgctgcaggtctggagctgctacaagtgtatctcctcacagaga
gggaggggcggggacagggtcaccacggagaccgggagggggcgaagcacctccctcgca
cagaccaacgtgatgtccagggaagcaggggaagatgggaaaaaggtgtttgctgagacc
acgttggacccccagcagagtcagtcctgggaccagctacgatgtctctacagaggacct
tccaggttggccatcctgtcggaaatctcccactgccatggcaacgagaaggcgggcctc
ctaaacccctcccaaccaggaacaggaagtatattccacagcgagaacttccagctcaaa
ctctccccaccgccatcggtcgaagagtag
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