Oncorhynchus mykiss (rainbow trout): 110497502
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Entry
110497502 CDS
T07259
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110497502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110497502
03009 Ribosome biogenesis [BR:
omy03009
]
110497502
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110497502
Spliceosome [BR:
omy03041
]
Complex A
U2 snRNP components
U2 related factors
110497502
Complex B
110497502
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
110497502
Ribosome biogenesis [BR:
omy03009
]
Eukaryotic type
90S particles
Helicases
110497502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
SRP54
Flavi_DEAD
AAA_29
Motif
Other DBs
NCBI-GeneID:
110497502
NCBI-ProteinID:
XP_021429308
Ensembl:
ENSOMYG00000013159
LinkDB
All DBs
Position
19:22365792..22381737
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AA seq
759 aa
AA seq
DB search
MSKRHRLDLGDDYSNKKRSDGKDRDRDRDRDERSKDRDRDRDRDRDRDRDVKPSVQPPNT
MMAGGGMLPLKQTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILARHQSF
VLVGETGSGKTTQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVMLGQE
VGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVL
KEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAI
RTVVQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKVIPLYSTLPPQQ
QQRIFEAAPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESL
LVTAISKASAQQRAGRAGRTRPGKTFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKK
LGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVI
ASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFKQ
NHESTQWCYDNFVNYRSLMSADNVRSQLSRIMDRFNLPRRSTEFTSRDYYINIRRALVTG
FFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSDIKPE
WLVKVAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacaccgtttagatttaggcgatgactactcaaataaaaagagatctgat
gggaaagaccgagatcgcgacagggaccgtgacgaacgctctaaagacagggaccgcgac
agagatcgggaccgggaccgagatagggatgtgaagccctctgtccagccccccaacacc
atgatggccgggggaggcatgctgcctctcaagcagacagccatgcagcagcagatcaac
ccattcacaaacctgccccacacgccgcgctactatgagatcctgaagaagaggctgcag
ctgcctgtgtgggagtacaaggagcgcttcaacgacatcctggcacgccaccagagcttc
gtgcttgtcggagagacgggttccgggaaaaccacacagatcccccagtggtgtgtggac
atggtgaagggattgggtggccccaagaaggcagtggcctgtacccagcccaggagggtg
gcagccatgagcgtggcccagagggtggccgacgagatggacgtcatgctgggccaagag
gtgggatactccatacgatttgaggactgcagctccgccaagaccatactgaagtatatg
acagacggtatgttgcttcgggaagccatgaacgaccccctgctggagcggtatggcgtg
atcatcctggatgaggcccacgagagaactctggccacagacatcctaatgggagttctg
aaggaggtggtccgacagaggtcagacctcaaggtgattgtgatgagcgctacgttagac
gccgggaagttccaagtgtactttgacagctgtccactgctgactattcccggacgcaca
caccccgtggagatcttctacacccctgagccggagcgggactacctggaagccgccatc
cgcacggtcgttcagatccacatgtgtgaggaagaggagggggactgtctgctcttcctc
actggacaagaggaaattgacgaggcctgtaaacggatcaaacgggagatcgacgacttg
ggacctgaagtcggagacatcaaagtcattccactatattccacactgcctccccagcag
caacaaagaatctttgaggccgcaccccccaggaagcccagcggtgcgataggaagaaag
gttgtggtttccacaaacattgctgagacatcccttaccattgacggagtggtgtttgtg
attgatcccggttttgccaagcaaaaggtgtacaaccctcgtatcagggtggagtctctc
ctggtcacggcgatcagcaaagcctcggcgcaacagagggcgggccgcgctggcaggaca
cggccagggaagactttccgtctatacactgagaaagcctacaagaccgagatgcaggac
aacacgtatcccgagattctccggtccaacttgggttctgtcgtgttgcagttgaagaag
ctgggtatcgatgacctggtgcactttgacttcatggacccaccagccccggagaccctg
atgcgggcgctggagctgctcaactacttggcggcgctcaacgacgacggcgacctgaca
gagctgggctccatgatggcagagttcccattggacccccagctggccaagatggtgatc
gccagctgcgagttcaactgctccaacgagatcctctccatcaccgccatgctgtcagtc
ccgcagtgtttcgtccgccccaccgaggctaagaaggcggcggacgagtccaagatgcgg
ttcgcccacattgacggagaccacctgacgctcctcaacgtctaccacgccttcaaacaa
aaccacgagtctacacagtggtgctacgacaactttgtgaactaccgttcgctgatgtcg
gccgacaacgtgcgctcgcagctgtcccggatcatggaccgcttcaacctgccccggcgc
agcaccgaattcaccagcagagactactacatcaacatccgccgagcgctcgtcacaggc
tttttcatgcaggtggctcatttggagcgcacgggccattacctcacagtcaaggacaac
caggtggtccagctacacccgtctaccgtcctggaccacaagccagagtgggtgctctac
aatgagtttgtcctcaccaccaagaactacattcgcacctgctcggatatcaaaccggaa
tggctggtgaaggttgctcctcagtactacgaaatgggcaacttcccacagtgtgaagcc
aagaggcagttggagcgaattgttgccaaactccagaccaaggagtattcccagtactga
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integrated database retrieval system
