KEGG   Oncorhynchus mykiss (rainbow trout): 110497992
Entry
110497992         CDS       T07259                                 
Name
(RefSeq) histone-binding protein RBBP4 isoform X1
  KO
K10752  histone-binding protein RBBP4
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03082  ATP-dependent chromatin remodeling
omy03083  Polycomb repressive complex
omy04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    110497992
   03083 Polycomb repressive complex
    110497992
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    110497992
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:omy03036]
    110497992
Chromosome and associated proteins [BR:omy03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     110497992
  Histone modification proteins
   HAT complexes
    HATB complex
     110497992
   HDAC complexes
    Sin3A-HDAC complex
     110497992
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     110497992
    PRC2.2
     110497992
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     110497992
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    110497992
  Chromatin remodeling factors
   NuRD complex
    110497992
   NuRF complex
    110497992
   NuRF complex (fruit fly)
    110497992
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_2nd EIF3I Beta-prop_DCAF12 WD40_RFWD3 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st eIF2A Beta-prop_RIG_1st MIOS_WD40 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 110497992
NCBI-ProteinID: XP_021430187
Ensembl: ENSOMYG00000030542
UniProt: A0A060WNC7
LinkDB
Position
19:45793890..45798812
AA seq 424 aa
MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVNRPEGKD
FSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARHMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECTPDLRLRGHQKEG
YGLSWNPNLSGCLLSASDDHTICMWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILASGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGAADT
EVQA
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggctgataaagaagcagcgtttgatgatgctgtggaggagagggtgataaatgaggag
tacaagatatggaagaagaacacacccttcctctatgacctggtgatgacccacgccctg
gagtggcccagcctcactgcacagtggctacccgatgtcaacagacctgaagggaaggat
ttcagcgtacacaggttggttcttggcacacacacctcagatgaacagaatcacctggtc
atcgccagcgtgcaactgcctaatgacgatgcccagtttgatgcctctcactatgacagt
gagaaaggtgagtttggaggctttggctcagtcagtggtaagatagagattgaaatcaag
atcaaccatgagggagaggtgaacagagcccgccacatgccccagaacccctgcatcatt
gccaccaaaaccccaaccagcgacgtgctcgtctttgactacaccaaacatccctccaaa
ccagatccatctggagagtgtaccccagatctgcgtttgaggggacaccagaaagagggc
tacggtctctcctggaaccccaacctgagtggctgcctcctcagtgcttctgatgaccat
actatctgtatgtgggacatcagtgccgttcctaaggagggaaaggttgtagatgcaaag
actatctttactggacacacagctgtagtggaggacgtctcctggcatctactgcatgag
tcactctttggatctgtagctgatgaccagaaactcatgatttgggacacgcgatccaac
aacacgtccaaacctagccatgctgtggacgcccacactgcagaggtcaactgtctgtcc
ttcaacccttacagcgagttcatcctggcctcgggctcagcagacaagactgtagccctt
tgggacctgaggaacctgaaactgaagctgcattcgtttgagtctcacaaagatgagatc
ttccaggtccagtggtctcctcataatgaaaccatcctcgcctccagtggcacagacagg
cgactcaatgtgtgggacctcagtaaaatcggggaggagcagtcgccagaggatgctgag
gatggtccacctgaactgctgttcattcatggcggtcacacggctaagatctctgacttc
tcatggaaccccaacgaaccctgggtcatctgctctgtgtccgaggacaacatcatgcaa
gtttggcagatggctgagaacatctacaatgacgaggacccagagggagcagcagacact
gaggtccaggcatga

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