Oncorhynchus mykiss (rainbow trout): 110498014
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Entry
110498014 CDS
T07259
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013
Nucleocytoplasmic transport
omy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110498014 (srrm1)
03015 mRNA surveillance pathway
110498014 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110498014 (srrm1)
03041 Spliceosome [BR:
omy03041
]
110498014 (srrm1)
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110498014 (srrm1)
Spliceosome [BR:
omy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
110498014 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
110498014
NCBI-ProteinID:
XP_021430220
Ensembl:
ENSOMYG00000032114
LinkDB
All DBs
Position
19:complement(46789732..46803061)
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AA seq
876 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDEKENKDNRERESPRRRKSRSQSPRRRSPVKRE
RKRSHSRSPRRKPSPSSSPPPTAPAVTLVSVTLPQSTEEPQPEPDTSESAVPEPVIQEAS
STSDLVKPHTVVVVPDSVMKVKEPSPGKASKKEERPKPREKDGRRDRPRHRSRSHSRRRP
KSRSRSYSPRRRPSPRRRMSPRRRSPPRRGPPGPRHRRSRSPVRRRRSRSPSSSGSNSSV
PRSPQKAMKRTSTTPPRKQPRGHAADPSLSPSRRRAPNGSPPGKARRSASPRARKGRSSA
SPSRSAGSKKKPGSRNDSLSPVPKPRHSEASESEGATADPVQQRRQYRRQNRETSSDTGS
SSSSEDEGSKRPGGGPAARNGNVRRRRSRSPSSPRRRHRDGSPRKRRSLSPGGRRSPPRR
RRSPSPPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPTPLGPQKRRLSRSPPPKYLSPMP
KRHPSRSPKRRSPPPQKRRTPPLPTSPPRHRRSPMLPSNRPGRGTRSPPAVHSNRLSPSP
ANRGQAMRGSASPQGRFDSSGASPPGQRRQVSPSHSNRAIRRVSRTPEPRKNQRASQSPQ
PMRRASSRSPSGSPKPGALKRPAPASGFPSSGCSASGSPSAPLAKKASSGSGSPSPNKNS
DTEAGGKKNKKHKKEKKHKKDKKHKKHKKHKKEKSGVLVAAGDGQENLGMEEDVDSDLKK
ESDSEVEERLDDLEKHLREKALRSMRKAGKLSPPLS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggcacaagtgcagaacaggacaatcgcttcagcaacaag
cagaagaaacttctaaaacaactgaaatttgcagaatgtctggaaaagaaggtggatatg
accaaggtgaacctggaagtcatcaaaccttggatcactcagcgagtgacggagatcctg
gggttcgaggatgatgtcgtcatagaattcatatttaaccagctagaagaaaagcacccg
gacagtaagatgatgcagatcaacctgacgggattcctgaatgggaagaatgccagagag
tttatgagggacctgtggcctctgctgctcagtgcccaggacaacattgccggtatcccc
tctgccttcctggagcagaagaaagaggagatcaaacagagacagattgagcaggagaag
cttgcctctctgaagaagattgatgagaaggaaaacaaagataacagagaaagggagagc
cccagaaggaggaagtcaaggtcacagtctccacggcgacggtctccagtgaagagagag
agaaagcggagtcactcccgctccccgaggcgtaagcccagtcccagcagctcccctcca
ccaacagccccagctgtcaccctggtcagtgttacattgccccagagcactgaggagccc
cagccagagccagacacctctgagagcgccgtacccgagccagtcattcaggaggcctct
tccaccagtgatttggtgaagccgcacactgtggttgtggtacctgactctgtgatgaag
gtcaaagaaccctccccaggtaaggcttctaaaaaggaggagaggcccaagcccagggag
aaggacggcaggagggacaggccccgccaccgctctcgctcccattcccgcagacgacct
aaatcgcggtccagatcttactccccacgccggaggccgagccccaggagacggatgtcc
cctcgtcgaaggagcccccccagacgtggccccccaggccccagacacaggcgcagtcgc
tcccctgtccgcaggcggcgctctcgctccccatcatcctctgggagcaactcctccgtg
cctcgctcacctcagaaggccatgaagagaacgtcaaccacacctcctaggaaacagccc
cgcggccacgcagctgatccctccctcagcccctccaggagaagagcccccaatggtagc
ccccctgggaaggcccgacgctctgcctcccctcgggctagaaagggccggtcctcagcc
tccccgtccagatcagctggttcaaagaagaaaccaggatcaaggaatgattcactgtct
cctgttccaaaacccaggcattctgaggcatcggaatcagagggggctactgcagatcct
gtgcagcagcgacgtcagtatcgcaggcagaatcgggagacgtcttcagatactggatca
tcctcctcatcagaggacgaggggtccaagaggccgggcggagggccagcggcgaggaac
gggaatgtcaggaggaggcgcagtcgctccccctcctcccccaggagacgacacagggac
ggctcccccagaaaaagacgctccctctctcctggaggacgccgatctcccccacgccgt
cgcagatctccctctcctcctccgagacgcaggtctccctctccacctcctcgcagacgc
tccccctcccccaggcgttactctccccccatccagcggcgctacagccctactcccctg
ggcccacagaagagaaggctatcgcggtctccccctcccaaatacctttccccgatgccc
aagcgccatccctccaggtccccgaagcgcaggagtccccctccccaaaagagacgcaca
cctcccctccccacctctcccccccgacacaggaggagccccatgctcccatccaaccgg
ccaggccggggaacgcgctccccccctgctgttcacagtaaccgcctctccccctcccct
gccaaccgtggtcaggccatgcgtgggtctgctagtcctcaggggcgctttgactcctcg
ggcgcctctccacctggccagaggcgccaggtgtccccctcacacagcaacagggcaatc
cgcagggtgtcccggacaccagagccccgcaagaaccagagagcctctcagagcccccag
cctatgaggagagcgtcatcaaggtcaccgtctggttctcctaaaccaggagccttgaag
cggccggccccagcctcaggcttcccctcatcgggctgctcggccagtggctcgccatca
gcccctctggccaagaaggccagcagcggctctggcagcccttctccaaacaagaattca
gacactgaggctggaggaaagaagaacaaaaaacataagaaggagaagaaacacaagaag
gacaagaagcacaagaaacacaagaaacacaagaaggagaagagtggagtgctggttgct
gctggggatggccaggagaacctggggatggaagaggatgtagactccgaccttaaaaag
gaatcagacagtgaagtagaagagcgtctggacgacctggagaagcacctgcgagagaag
gcactgcgttccatgaggaaagctggaaagctgtccccgccactgtcttga
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