Oncorhynchus mykiss (rainbow trout): 110498100
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Entry
110498100 CDS
T07259
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110498100
Transcription factors [BR:
omy03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
110498100
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
HTH_31
HTH_37
CUT
Motif
Other DBs
NCBI-GeneID:
110498100
NCBI-ProteinID:
XP_036810952
UniProt:
A0A8C7QHT8
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Position
19:52612596..52646892
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AA seq
546 aa
AA seq
DB search
MSRYTDEPRFTIEQIDLLQRLRRTGMTKPELLHALDILERLDHQHGHKFGRRPQPAYQGP
TPNYNTNSTSSSASSSTSTTATQTGYLENGSGSGGNGLSPSPSNNYDMSPPLPAVVSDPV
AMAVVAQNGHGVGGGDELVAVTNGKLSPPRFPDSVGAVSGGVTGSGYGFEASEEELDVDD
KVEELLRRDSAIIKEEIKAFLGNRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRA
FYRWYQLEKTTPGATLTMRPAPMALEDVVELRQTPPPISSTPGSFRLRRGSRFTWRKECL
SVMESYFNENQYPDEAKREEISNACNAVIQKPGKKLSDLEKVTSLKVYNWFANRRKEIKR
RANIEAAILESHGIEVQSPGGHSNSDEIDGNDFSDQGCEVPLFEKRAVTRPFSLSRRDLS
SPTQVPTLLPSWLAAWPGSGRGGLAVQRASSLICRSLLSGASLAQGAGTEGSRLTGVSWS
APSPPSLQDDSSTNHSNALEHQDPITLAVEMAAVNHSILALATQAGGGLALGGTGSDIKT
EVVEPN
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggtataccgacgagcctcgtttcaccattgagcagattgacctgctccagcgg
ctgaggaggacagggatgaccaagccagagctcctccacgccctggacatcctggaaaga
ctggatcaccagcacggacacaagtttggacgccgtccccagcccgcctatcagggaccg
acgcccaattacaacactaattcaacatcttcttcggcgtcctcatcaacgtccacgacc
gccacacagactggttacctggagaatgggagtggaagtggcgggaatggcctgtcgccg
tcgcctagcaacaactatgatatgtcaccgccccttccggcggttgtatccgacccagtt
gctatggcagtggtggcgcagaacgggcatggggttggtggcggcgatgagctggttgcc
gtgacgaacgggaagttgtctccaccacggtttcctgacagtgtaggcgcggtgagtggc
ggcgtgacggggagcggttacgggtttgaggccagcgaggaggaactagacgtggacgac
aaagttgaggaactcctgaggagggacagtgccataatcaaggaggagatcaaggcattc
ctggggaacaggcgcatctctcaggcagtggtggctcaggtcacaggtatcagtcagagt
cgtatctcccactggctgctgcagcagggctcggaccttagcgaacagaagaagagggcc
ttctaccgctggtaccagctggagaagaccacccctggtgcaactctgacgatgcgacca
gcccccatggctctggaggacgtggtggagttgcggcagactccgccccctataagctcc
acccccgggagcttccgtctgcgcagaggcagtcgctttacctggaggaaagaatgtctg
tctgtgatggagagttacttcaatgagaaccagtaccctgatgaagctaaaagagaggag
atctctaacgcctgcaacgctgtcatccagaagccagggaagaagctgtctgatctggag
aaggtcacgtctctgaaggtctacaactggttcgccaaccgacgcaaagagatcaagaga
cgtgccaacatagaagcagcaatcctggagagccatgggattgaagtccagagccctgga
ggacactccaacagcgacgaaatcgacgggaatgacttctctgaccagggctgtgaggtt
cctctgtttgagaagagagctgtgactagacctttcagtctcagtcgacgagacctgtcc
tctcccacacaggttcccaccctgctgccaagctggctggcggcttggcccggctcgggc
agggggggcttggccgtccagagggccagctctctgatttgccgatccttgctctcggga
gcgagtctcgctcagggggcagggacggagggttccagactgactggtgtgtcctggtct
gccccctcccccccctccctccaggacgactcctccaccaatcacagcaatgccctggag
caccaggatcccatcactctcgcagtggagatggcggccgtcaatcatagcatcctcgcc
ctagccacgcaggcggggggaggattggccctgggcgggacaggcagtgacatcaagacc
gaggtggtggagcccaactag
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