Oncorhynchus mykiss (rainbow trout): 110498297
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Entry
110498297 CDS
T07259
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04140
Autophagy - animal
omy04142
Lysosome biogenesis
omy04148
Efferocytosis
omy05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
110498297
04140 Autophagy - animal
110498297
04148 Efferocytosis
110498297
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
110498297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110498297
Membrane trafficking [BR:
omy04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
110498297
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
110498297
NCBI-ProteinID:
XP_036811294
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Position
19:complement(64889417..64947429)
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AA seq
876 aa
AA seq
DB search
MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLFIVSQYKILISLLENNIHVHDLLTFQQITVVSKAKGATLFACDLQLSPSGE
AQLRMCVAVKKKLQLYYWKDREFYELQGDFSAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVVPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIDME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLANMKDDVEGDKRQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPADYRKQLHYPNPLPSLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSEPSTPSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLDNNHCHIEES
EYILKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGMENLG
IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAIPYLEHIVHVWE
ETEPEFHNVLIQLYLERVQGLMKQYLNSLPEGVPAVAAGKEEGDLGEFRSKLVCFLEVST
SYEPGRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTHMAKEYCHRHYDKDTD
RNKDVYLSLLRMYLSPPDVHCLGPIKMELSEPQANLKAALHVLELHHSKLNTAKAINLLP
ANTQIREIRVFLESVLEEKAQRKRFDQVLKSLLQAEFLRVQEERIFHQQVKCTISEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRGVCPIEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcttacgaaccggtacctatcctggagaaactgcctctccagattgactgc
cttgcggcctgggaggactggcttctagttgggaccaaaccaggccatctgctgctctac
agaatcaaaaaggatgcaggtaccaacaggtttgaggtgactctggagaaatccaacaag
aacttctccaagaagatccagcagctcttcattgtctcacagtacaagatcctcatcagt
ctactagagaacaacatccatgtccacgacctattgacctttcagcagattactgtggtc
tccaaggccaaaggggcaacgctcttcgcctgtgacctgcagctgtccccttcaggagag
gcccagctgaggatgtgtgttgcagtgaagaagaagcttcagttgtactactggaaggac
agggagttctacgagctacagggggacttttctgctccagacatcccgaagtccatggcc
tggtgtgagaactccatctgtgtaggcttcaagagagactactacctcatccggatggat
ggccgtggctccatcaaggagctcttccccacggggaagcagctggagcccctggtggtt
cccctggctgatgggaaggtggcggtgggccaggatgacctcacggtggtgctcaacgag
gaaggggtctgcactcagaagtgtgccctcaactggactgacatccccattgatatggaa
catcagcccccctacatcatagctgtcctgcctcgctatgtggagatcaggacctttgaa
cccagactgctggtccagagtgtggagctacagagaccacgatttatcacctcagctggg
cctaatatagtgtacgttgccagcaaccattttgtctggcgcctggtacctgtgtccatc
gccagtcagatcagacagttactacaggacaagcagtttgaactggccctgcaactggcg
aatatgaaggatgacgtggaaggagataagagacagcagattcaccacatccagaatctc
tatgccttcaatctgttctgtcagaagaggtttgatgactccatgcaggtgttcgctaag
ctcggcacagatcccacccatgtgattggtctgtatccagacctgctccccgctgactac
cgtaaacagctgcactaccccaaccccttgcccagtctgtctggagcagaactggagaag
gctcacctggcgctcatagactacctgacacagaaacgcagccacctggtgaagcagctg
aacgactccgagccgtccaccccgtctcccctcatggaagggactcccaccatcaagagc
aggaagaaactcctgcagatcatcgacaccacgctgctcaaatgctacctgcataccaac
gtggccctggtgtcccctctgttgcgtctggataataaccactgtcacattgaggagagt
gagtacatcctgaagaaggcccacaagtacagcgagctcatcatcctctatgagaagaag
ggcctgcatcagaaagccctacaggtgttgttggaccagtccaccaaggctaactctccc
ctaaaggggcatgagaggactgtgcagtacctccagagactggggatggagaatctaggc
atcatctttgagttctctccctgggtgttgaagatctgtcctgaagacggactgaagatc
ttcactgaggacctgacggaggtagagaccctgcccagagacaaggtcctgaacttcctg
aaggagggctttaaggagctggctatcccctacctggagcacatcgtacacgtctgggag
gagacggagccagagttccataacgtcctcattcagctttacctggagagggtccagggg
ctcatgaagcagtacctcaactccctgcccgagggggttcctgcagtggctgctgggaag
gaggagggggacctgggagagttcaggagcaagctagtgtgtttcctggaggtctctacc
agctacgaaccaggccgacttatctctgacttccccttcgatggtcttctggaggagcgg
gccctgctgctgggtcggatggggaaacacgaacaggccctcttcatctacgtacacgtc
ctgaaggacacacacatggccaaggagtactgtcaccggcattatgacaaagacacagac
agaaacaaagatgtgtacctgtctctgctgcgcatgtatttgtcccctcctgatgtccac
tgccttggaccaatcaaaatggagctgtcggagccacaggccaatctaaaggctgctcta
cacgtgctggagctgcaccacagcaagctgaataccgctaaggccatcaacctgctgcca
gccaacactcagatcagagagatccgtgtgttcctggagagtgttctggaggagaaggcc
cagaggaaacgctttgaccaggtcctcaagagtctgctgcaggccgagttcctacgggtc
caggaggagcgtatcttccaccagcaggtcaagtgtaccatctcagaagagaagacctgc
cgggtctgtaagaagaagataggcaacagcgccttcgccaggtatcccaacggtgttgtc
gttcattacttctgctgtaaggaccgaggggtgtgtcctattgagcagtga
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