Oncorhynchus mykiss (rainbow trout): 110498679
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Entry
110498679 CDS
T07259
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110498679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110498679
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110498679
mRNA degradation factors
5'-3' decay
Decapping complex
110498679
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
HTH_AraC
Motif
Other DBs
NCBI-GeneID:
110498679
NCBI-ProteinID:
XP_036810329
LinkDB
All DBs
Position
19:19960666..19986083
Genome browser
AA seq
896 aa
AA seq
DB search
MFRFQSLDEDCTLEKEEGLVEEEHEIDQFNDDTFGDGAIDDDWQEEHKRLAELEEQKNDL
LGGLGLGTLGMGGMGGGNASTVHLPPPASRVPHPSSLPPPHHSLSSMPPPGLEERGGGVL
AESLAMLILGADPAIASVGGPAGPDDRSTGLPPPPSIPLQHHHPSQLPLHHQLTPSGLPP
GPPHLSLLSYQQHQHLLRRGAAPMQQMNSHNIWENNLGFGPVSITPGLITQMEDSPLMSI
IKEVGLPNRPPPMMSEDGRDLSERAPPPRSSSPVIGSPPVRAVPIGTPPKQPISHAMNHH
HHQQIHHPTAVHVRAPVHHQHRYPPSFPERISPNTLLNIANSPLCRPPFPAGVGPVLSQI
QRAQMLNSQLSRKHHESRECQTLVTKFAHQGPPRHLPVQVSTEQQVCPTKMTRYKSSLDS
TLTCVLIRTPECTRLEPSHSQIWPPGVYSFVAGFPRGCQGPPLLPGGGGFRPFFGQPPPH
RMGPHPGGPPPNHNHVPCPIIRHNTTHLHPQHRRMLTQRMQSRGGERGGRVGDWRSRDPY
SNLMSQREKEWVAKIQMMQLQSTDPYLDDYYYQNYFEKLEKRQERDRDGVRKEHTTKLIT
PQVAKLEHTYRPVQFAGSLGKLTVSSVNNPRKMIDTVVTSRTDDEEKREKQVWDKRRQIL
YTVEKMYSLLLEVQDFEKRFMQTPEEQREALLEQHKTHTLQLYSSLKEKEWDDRVSDEQC
LLIMSVRKGKRLVSRLIPFLPPLQAATVVMGIARNLPALAKKDKQDQVLCWLVEPIAVVI
SSLSSASLTDLLQELQGSEGQLSRVLQNKFGVTLLYLILSEGERMQSSNPTCQLMDDNRW
TELVFSVTRELLNVPSSSLSPPLFTPPNLLSLFSRYVDRQRLELLQEKLQISALSR
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtcccttgatgaagattgtaccctggagaaggaggaggggctggta
gaagaagaacatgagattgaccagtttaatgacgacaccttcggagatggggccatcgac
gatgactggcaggaggagcacaagcggctagctgagctcgaagaacaaaagaacgattta
ctcggaggtttaggactagggacactagggatggggggaatgggaggaggaaacgcctcc
actgttcaccttcctcctcccgccagtcgcgtcccccatccgtcttccctcccaccacca
catcactccctctcttcgatgccccctccgggcctggaggagagggggggaggcgtccta
gccgagtccctagccatgttgattctcggggcggacccggccatcgccagtgtgggtggt
ccagccgggcctgatgaccgatccactggtctccctcctcccccttccattcccctgcag
catcaccacccctcccagctccctctccaccaccagctgaccccgtctgggctaccaccc
ggcccaccgcacctctccctgcttagctaccagcagcatcagcaccttctacgacgaggg
gcggcccccatgcaacagatgaactctcacaatatctgggagaacaacttgggattcggg
cctgtgagcatcacccctggactaatcactcaaatggaggacagtccacttatgtctatc
atcaaagaagtggggctgcccaatcggcctccgccaatgatgagcgaggatgggcgggac
ttgtcagaaagggcccccccgcctcgctcgtcctctcccgtgattggtagcccaccagtg
agggctgtgcctatcgggactccgcccaagcaaccgattagtcatgctatgaatcatcat
catcatcagcagatccaccaccccactgccgttcatgtgcgagccccggtccaccaccaa
caccgctaccccccttccttccctgagcgcatctctcccaacaccctcttaaacatcgct
aactctcctctgtgtcgtcctccgttcccggccggcgtgggccccgttctgtcccagatc
caacgcgcccagatgctcaactctcagttgtctcgaaagcaccatgaatccagagaatgc
cagactttggtgacaaaatttgcccaccaaggaccgccgcgccaccttccagttcaagtg
agcacagaacaacaagtttgtcccaccaagatgacacgctacaaatcgtcactggactca
acgctcacctgtgttctcatccgtacacctgaatgcactcgccttgagccgtctcactca
caaatttggccacctggagtgtattcattcgttgctggcttccccaggggctgtcagggt
cccccgttgctgcctggtggcggaggcttcaggcccttcttcggccagccccctccccac
aggatgggtccccaccccggcgggccccctcccaaccacaaccacgtcccttgtcccatc
atccggcacaacaccacgcacctgcacccccagcaccgccgcatgctcacccagaggatg
cagagtagaggaggtgagcgtggcgggcgtgttggggactggcggagcagggacccctac
agtaacttgatgagccagagggagaaggagtgggtggccaagatccagatgatgcagctg
cagagcactgatccctacctggatgactactactaccagaattactttgagaagttggag
aagaggcaggagcgagacagagacggcgtgaggaaggagcacaccaccaaactcatcacc
ccccaggtggccaagctggaacacacctacagaccagtgcagtttgcaggctcgctgggt
aagctaactgtgtccagcgtcaacaaccccaggaagatgatcgacacggtggtgactagt
cgcactgatgacgaggagaagagagagaaacaggtgtgggataagagacggcagatcctc
tacactgtggagaagatgtacagtctgctgctggaggtgcaggactttgagaagcgcttc
atgcagacgccggaggagcagagggaggccctgctggagcagcacaaaacccacacgctg
cagctctacagctccctcaaggagaaggagtgggacgacagggtgagtgacgagcagtgt
ctgttgatcatgtcggtgcgtaagggaaagcgcctcgtctccaggctcatccctttcctg
cctccgctgcaggccgccaccgttgtcatggggattgcccggaacctgccagccctggcc
aagaaagacaaacaggaccaggtgctgtgctggttggtggagccaattgccgtggtgatc
tcatccctatctagcgcctccctcacagatttgctgcaggagctgcaaggcagcgagggt
caactgtccagagtgttacaaaataagtttggtgtgacactgctttacctgatcctgagt
gaaggagagcgaatgcagagctccaaccccacctgtcaactcatggatgacaatcgatgg
acagagttggtgttctctgtgaccagggagctgctcaacgtgccctcctcgtccctgtcc
cctcctctcttcacccctcccaacctgctctctctcttctcgcgctacgtcgaccgacag
aggctggagctgctgcaggagaagttacagatctccgcattgtccaggtag
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