Oncorhynchus mykiss (rainbow trout): 110498692
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Entry
110498692 CDS
T07259
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04517
IgSF CAM signaling
omy04520
Adherens junction
omy04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
110498692
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
110498692
04530 Tight junction
110498692
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DIL
RA
PDZ
RA_2
PDZ_2
PDZ_6
RA_3
Motif
Other DBs
NCBI-GeneID:
110498692
NCBI-ProteinID:
XP_036810417
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All DBs
Position
19:complement(26617454..26640534)
Genome browser
AA seq
1284 aa
AA seq
DB search
MAGKEEWQRLADIIQHWNNTRLDLFEISLPCKNLEFHGVMRFYFEDHVAGNVATKCLRIS
STTTTGEVIETLSEKFRPDMKMLNTPYFLFEVHANKEERQLDLSEKPLVVQLNWNTHNRE
GRFVLKKDKDIIVHDNSPEKKKGGMIQNFKRTLSRKEKKKEKKKTGDDAVNHSAKPNGST
MRKENGQISASVPVEKSWTNKDIVSNPDTTECKKSSTWRGMVRKHNQQQDYRTRNERDQD
NMDQLALPVGIKFRENSEDPFLSAVINYTNSSTVHFKLSPAYVLYMAGRFVLHRHYSHSQ
ETSQSHRPSEHAHRVTATVNKMVAMTEVVIQKQKSIAGAVAFWMANASELLNFLKQDRDL
SPITLQAQENLAHLVYKAFKCLTQCLLADLSRHLPEFLIYPEGSQSPAGIEGVLQTLMGA
MSLLRRCRVNAALTIQLFSQLFHSISAWLFNRLLSPSPQGEACSLGLRSHYWGATIRQRL
SLVEDWAERQGLELAADCHLSRIIQVTMLLTMNKYSMQDSENIQNTCFKLNSLQLRTLMT
SYLYDTNEPRIAPGVIDRVVAAAEASADEMLRNEGQDLQLEEGPDLHLPFLLPEEGYSCD
TVNGIPQGFREFLEPICRKGLCTLMSHPQSGGTWTIFFNRANSFFAQDANPPLHRELEVV
TITLTKPLNSGMGVSIVAAKGAGQDNLGIYVKSIVKGGPAEMDCRLTVGDQLLCVDGHSL
VGLSQERAAGIMMHTGPVVTLQVAKQGATCHGLAALLDEPPSVSTTALDGSGPTSSSHAK
LNCKAPIVYDGMEQSSGPSGLWGNNSHGGNRRQREQTLLKNRQLYRSNPNMISPEGEPVD
PAILTDSKITAVSTSNLLCSDMYQREYLTLPAPRSQDKKTVAFELPPQEPRVSFNLDGQI
SNKRTLMRQALSQENLCMENDRPLVDNIHNAWNQNQQESYYTSFPMKPSISTHDIHYNHT
VSLSTKTQPSRHNTGYGYWRTPTSHDPSSAIQPIHIDIPATRLSNTQPRSPMTTFQQTPT
LLPVKLNQNPEGKGQGQALLSNQKQGSHYQLPAQHRQATCPPPSSVSMRQPQPSLSSSQK
IQQQQASRRVQTATSQLFPTQSKDTSLQRPPAKPQPGTTPGHQDQYFSMNKEPPSEGNTS
LSPDPWKRDAREKQQKQQRLQVVDLLEQEIQDLQAKAQLTPEETDRLRRLNLEWQFQQRL
QEFQQNGNDDDDEDDDEEEDRDTSTGENVQESNGLNVNFDEKCSKEGQEENNFKGDATPE
NLTFKERQRLFSLGSNASIKVKAL
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atggcagggaaggaagagtggcagagattagctgacatcatccaacattggaacaatacc
cgactggacctgtttgagatcagtctgccatgcaagaacttagagttccatggagtgatg
cggttctactttgaggaccatgttgcagggaacgttgccaccaagtgcctgcgtatcagc
agcaccaccaccactggagaggttattgaaacactgtcagagaagttcagaccggacatg
aagatgttgaatactccctatttcctgtttgaggtccatgctaacaaggaagaacggcag
ctggacctgagtgaaaagcctctggttgtgcagctgaactggaacacacacaacagggag
ggccgcttcgtactcaagaaggataaggacattattgtacatgacaacagcccagagaaa
aagaagggaggcatgatccagaacttcaagaggacactgtcgaggaaagagaagaagaag
gagaagaagaagacgggagatgatgctgttaaccactcggcaaagcctaatgggtccact
atgaggaaagagaatgggcagatatcagcttctgtacctgtggagaagtcctggaccaac
aaggatattgtttctaaccctgacacaacagaatgcaagaaaagttccacatggcgaggc
atggtccggaagcataaccagcaacaagactatagaacaaggaatgaaagagatcaggac
aacatggaccaacttgcacttccagttggtattaaattcagggaaaattctgaggacccc
ttcctctctgcagtcatcaactacaccaacagttccactgtccacttcaagctctcccct
gcctacgtcctgtacatggccggacgcttcgtcctccaccgccattatagtcacagtcag
gagacatcacagagtcatcgcccctcagagcacgcacacagagtcaccgctactgtcaac
aagatggtagccatgactgaggtggtcatccagaagcagaagtccatagctggtgctgta
gccttctggatggccaatgcctcagagctcctgaacttcctaaagcaggacagagatcta
agccccatcactctgcaggctcaggagaacctggcacacctggtgtacaaagctttcaag
tgtttgactcagtgtctgctggctgatctgagcagacacttgccagaattccttatttat
cctgaggggagtcaatcacctgcaggaatagagggcgtactgcaaaccttgatgggtgcc
atgtctctgctgcgtcgctgtcgagtcaacgctgccctcaccatccagctgttctcccaa
ctcttccactccatcagtgcctggctcttcaacaggctgctgagccccagcccccaggga
gaggcctgctccctgggccttaggtcccactactggggggcaacaatccgccagaggctt
agcctggttgaggactgggcagagaggcaaggtctggagctcgccgcagactgccacctc
agccgcatcatacaggtaacaatgctgttgaccatgaacaagtattccatgcaagattcg
gagaacatccagaatacctgcttcaagttaaactccttgcagcttcgaacactgatgaca
agctacctctacgataccaacgagccccgcattgcccctggtgtgattgacagggtggtg
gcggctgcagaagccagtgctgatgaaatgttgcgtaatgaagggcaggacctccagctg
gaggaggggccagacctccacctgcccttcctgctccctgaggaaggctactcctgtgac
acggtcaatggcatcccgcagggcttcagagagttcctggaacctatctgccgcaaaggc
ctctgcactctgatgtctcacccccagtctggtggcacctggaccatcttcttcaaccga
gcaaacagtttctttgcacaggacgcaaacccgccactgcatagagaacttgaggttgtg
actattacactgacgaaacccttgaacagtggaatgggggtcagcatcgtggcggccaag
ggagcaggacaagacaaccttgggatttacgtcaagtctatcgtcaaaggaggaccagca
gaaatggattgcaggttaactgttggggatcagttgctgtgtgtggatggacacagtctc
gtgggcctctcacaggaaagggcagcaggcataatgatgcacactgggccagttgtgact
ttacaggttgccaagcagggggcaacatgccatggtctggctgccttgctagatgaacca
ccttcagtatcaactacagctttggatggtagtggccccaccagcagcagccatgctaag
ctgaactgcaaggccccgattgtgtatgatggcatggagcagagctctgggccctcagga
ctatggggtaataactcccatggagggaacaggagacagagagaacagaccctgctgaag
aacagacagctataccgctccaaccctaacatgatcagcccagaaggagaaccagttgac
ccagccatcctaacagacagtaaaatcactgcagtctccaccagcaaccttctgtgctct
gatatgtaccaaagggaatacctgactctaccagcccctaggtctcaggacaagaagaca
gtagcctttgaactcccacctcaggagcccagagtctcgtttaatctagatggacagatc
tccaacaagaggaccttgatgcggcaggccctttcacaggagaatttgtgcatggagaat
gatcgtcccctagtggacaatatacacaatgcatggaaccagaaccagcaggaaagctac
tacacctcttttcctatgaagcctagcatctctacccacgacatacattacaatcatact
gtcagcctttccactaagacccaaccgagccgccacaacacagggtatggctactggaga
actcctacgtcacacgacccttcgtctgccatccagccaatacacatagacatccctgct
acacggctttccaacacccagccgcgcagtccaatgactaccttccaacaaactcccact
ctactgcccgtgaagttgaaccaaaaccctgagggtaaaggccagggacaagccctcctc
agcaatcaaaaacaggggtctcattatcaactgccagcccagcatcgccaagctacatgt
cctcctccatcctctgtgtccatgaggcaacctcagccctcactctcatcctcacagaag
atccaacaacaacaagcctcgaggagggtgcaaacagcgacgtcccaactgttcccaacc
cagtcaaaagacacatccctccagagacctccagctaaaccacaaccagggaccacccca
ggacatcaggaccaatacttcagcatgaataaagagccaccatcagaaggcaacacaagt
ctgtctccagacccatggaagagggatgcacgggagaagcagcagaagcagcagagacta
caggtggtcgacctgttggaacaggagatccaggatctgcaggctaaagcccagctcaca
ccagaggagaccgacaggctccgtaggctcaacctggagtggcaatttcaacagagactg
caggagttccaacagaatggaaacgatgatgatgatgaggatgatgacgaagaagaagat
agagacacgtcaacaggagaaaatgttcaagagtcgaatggactcaacgtaaactttgat
gagaagtgctcgaaggaaggccaggaagagaacaacttcaaaggtgacgcaacacctgag
aatctcacatttaaggagcgccaacgtctcttctccctcggatcaaacgcctccatcaaa
gtcaaagccttgtaa
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integrated database retrieval system
