KEGG   Oncorhynchus mykiss (rainbow trout): 110499027
Entry
110499027         CDS       T07259                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:omy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:omy03036]
    110499027
   03400 DNA repair and recombination proteins [BR:omy03400]
    110499027
Chromosome and associated proteins [BR:omy03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    110499027
DNA repair and recombination proteins [BR:omy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     110499027
SSDB
Motif
Pfam: MMS19_C MMS19_N TOR1L1_N HEAT_ECM29 Sec7-like_HUS Adaptin_N
Other DBs
NCBI-GeneID: 110499027
NCBI-ProteinID: XP_036811773
Ensembl: ENSOMYG00000044207
LinkDB
Position
20:complement(14558661..14572216)
AA seq 1025 aa
MMAADSALLLGLVEEFVLGQQDRKAVDTATELKAGQFTILQLVEALGLHLTSSQPQTRGR
GVQLLSNVLQECYGDLTEREVKVLIVFYENRLKDHYVITPHVIQGLKALTKCSVLPPGSA
VSILKSLFQDIHVQSLMLAERSCVYNILIQLMESRESELKGLGADFVFGFVQSVDGERDP
RNLLLAFHIARKIVHEGYDLGKFTEELFEVTSCYFPIDFSPPANDPHGITQEELVLALRV
VLTGTPRFAEFLLPLIIEKLDSDVQSAKLDSLQTLTACASVYEHKDLAQFLPGLWASLRR
EVFQTASERVESAGLAAVGTLTACLSRSVLNSDSEDSLNVFLELVLKDCQHHLCEPDLKL
VWPSAKLLQATSTASYRASHRVAAAVLPSLIEQYNSRTQCAQRRTLLEVLQGFVHPVTSS
EEDESVLLDFRQSLCSIVFSALSESNADLQITSMRLLTALGQQTGLLLESDVELAVDHLT
RLILEEGDPKVSLAVVECAGALARLHPAAFISKMVPRLKEEIFSEPMAQGDSATPSREHS
QQAVRQRCVAALAAVSSRPSLVQESTPVLLQVLTSAHTGTGAFSLEEVISVCHSLQKIAE
QAQDTEETGGVFHDVIPRLLGLALQAALQGSSGHCSPILEETVLSAMVPIISTTCARLQS
RLAGQTASLAVSLFLDGDVSFLPENAFPTQIQLLKVRFQCWSQSQMVCLLMGCVCWLPRT
VEVPQMDRLLLELEELSCTCDHPLSYTSAAKCYAGLVNKSPAGEVLDSLIDRTLKRISTE
LDSASSPVRTQAFTLLLWVSKALLLRYHPLSTALTDKLFSLLSDPELGWLAADGFSLLMS
DSPDVLNRGSHADVRIMYRQRFFTENSAKLVEGFNAAVQEKKSGYLKALSHIVNNLPRQV
QLTELPALLPLLLEALSCPDQGVQVSTLSCLQPVLLDPPSALITQLEVLVGRTLALTTSP
TMKVRIASLRCIHALSRFPEHEIMPFRARVLRALAAPLDDHKRVVRSEAAVARNEWFLLG
SPGGR
NT seq 3078 nt   +upstreamnt  +downstreamnt
atgatggctgcggatagtgccttgctattgggcttggtagaagaattcgttttgggacaa
caggaccgcaaggcggtagacaccgcaacagaactcaaggctggacagtttactatactg
cagttggttgaagccttgggtttgcatctgaccagctcccaaccccagacccgaggccgt
ggtgtccagctcctctccaatgtcctacaggagtgttatggagaccttacagagagagaa
gtgaaagtccttatagtgttttatgagaacagattgaaggaccactatgtcatcacacca
catgtcatacaggggctgaaagcgctgaccaaatgctcagtgttgccgcctgggtctgca
gtgtccattctgaaatcactattccaggacatccatgtgcagtccctgatgctggcggag
cggtcatgtgtttacaacatcctcatccagcttatggaatccagagagtcagagctgaag
ggcctgggtgcagactttgtctttgggtttgtccagtcagtggatggggagagagaccca
cgcaaccttctgctggccttccatatcgctaggaagattgtccatgaaggctatgatctt
ggtaaattcacagaggagctgtttgaagtgacatcctgctatttccctatagacttcagc
cctcccgcgaacgacccccatggcatcacccaggaggagctggtcctggccctgagggtc
gtgctcaccggaacaccacgctttgcagagttcctgctgccactgatcattgagaagctg
gactccgatgttcagagtgccaagctggactccctgcagaccctgactgcctgtgcttct
gtgtatgaacataaagacttagcccaattcctaccaggcctttgggcctcgctgcgcaga
gaggtgtttcagacagctagtgagcgggtggagtccgctggcctagccgccgtcggtacc
ctgacagcctgtctctcccgctccgtcctcaactcggactctgaagactccctcaatgtc
ttcctggagctggtcctcaaagactgtcagcaccacctgtgtgagccggacctgaagctg
gtgtggcccagtgcgaagctgctgcaggccacctctaccgcctcctacagggcgagccac
agagttgccgccgccgtcctgccgtccctcatagagcaatacaacagccgcacacagtgt
gctcagcggcgcaccctactggaggtgttacagggctttgtccacccggtgacgtcctca
gaagaggatgagagtgtgctgttggacttcaggcagtctctgtgcagtatagtgttctct
gctctgtctgagagcaatgctgacctccagatcacatctatgcgtttgctcactgcactg
ggccaacagacaggcctgctgttagagtcagatgtggagcttgccgttgaccacctcacc
aggctcatcctggaggagggagatcctaaagtcagcctggctgtggttgagtgtgcaggg
gctctggctcgcctgcaccctgcagccttcatctctaagatggttccacggctgaaggag
gagatcttctcagagcccatggcacaaggtgacagcgccacgccgtcccgggaacattcc
cagcaggcagtgcgtcagcgctgtgtggcggcgctggctgcggtgtcgtcccggcccagt
ttggttcaggagagcacacctgtcctgctacaggtcctcacctctgcacacactggcact
ggcgcgttctcattggaagaggtgatctctgtctgccacagtctgcagaagatagcagag
caggcccaggacactgaagagaccggtggcgtcttccatgacgtcattcctcgcctgctc
gggctggcattgcaggcagctttgcagggttcctcaggccattgtagcccgatactcgag
gagactgtcctatcagccatggtacccatcatcagcaccacctgtgcccgactacagtcc
cgactggctggccaaacagcctcgctggccgtgtccctcttcctcgacggtgatgtttcc
ttcctgccagagaacgccttccccacccagatccagctcctcaaggtcaggtttcaatgc
tggagccagtcccagatggtgtgcctgctcatgggttgtgtgtgctggctgccacggacc
gtggaggtgccccagatggacaggctactgttggagttggaggagctgagctgtacctgt
gaccatccgctctcctacacgtcagccgccaagtgctacgctgggctggtcaacaagagt
cccgcaggtgaagtcctggactctctgatagacaggacgttaaagaggatctccactgag
ctggactctgcgtcctcccccgtcagaacgcaggcgttcactctgctgctctgggtgtcc
aaggctctcctccttcgctaccaccctctgtccacagccctgaccgacaagctcttctcc
ctgctcagtgacccagagctgggttggttagcggccgatggattctctctcctgatgagc
gactcgccggacgtcctgaaccgcggtagccacgccgacgtgcgcatcatgtaccgccag
cgcttcttcacggagaactctgccaaactggtcgagggcttcaacgccgcagtccaagag
aagaagtctggctacctgaaggcactgtctcacatagtgaacaatctacccagacaggtc
cagcttactgagctaccagcgctcctgcccctcctgctggaggccctgtcgtgtccggac
cagggggtgcaggtgtctaccctgtcctgcttgcaaccggtcctcctggaccccccttca
gccctcatcacccagctggaggtgctggtgggccgcactctggcgctcaccaccagccct
accatgaaagtgcggatagcctcactgcgctgtatccatgccctctcccgctttccagaa
cacgagatcatgcccttccgtgcgagggtgctgcgcgccctggctgcccccctggacgac
cacaagagggtggtgaggagcgaggcggcggtggcccggaatgaatggttccttctgggg
agtccaggaggcaggtga

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