Oncorhynchus mykiss (rainbow trout): 110499112
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Entry
110499112 CDS
T07259
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110499112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110499112
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110499112
Spliceosome [BR:
omy03041
]
Complex C
Other components
Step II factors
110499112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
GIPC1_GH2
nSTAND3
T2SSE
AAA_16
PhoH
nSTAND_NTPase5
Sigma54_activ_2
TsaE
ABC_tran
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
110499112
NCBI-ProteinID:
XP_036811852
Ensembl:
ENSOMYG00000020305
UniProt:
A0A8C7R349
LinkDB
All DBs
Position
20:20706399..20735339
Genome browser
AA seq
1233 aa
AA seq
DB search
MVSFSIKFQICLLLVSSENKTISWRMANIGDNELEQLEYLSLVSKVCTELDNHLGISDKD
LAEFVISLAEKQPTFDGFKSLLLKNGAEFTDSLVGNLLRLIQTMRPPSKTSTNKAVEPVV
KQKSEKDKLKELFPALCRPDDPAPKAILDEDDVKIADAAMKELEMFMPSVSRSDSKSKSR
SDKKRRHSRSRSRDRDRRRRHRSRSRSRSRSRSRDRDRQRDRDRERDRDRGKKRASRWSE
RSRTPSPHRDRDRDTKEGSDRWKDKHVDRPPPEEPTVGDIFNGKITSIMQFGCFVQLEGL
RKRWEGLVHISELRREGRVANVADVVQKGQRVKIKVLSFTGSKTSLSMKDVDQETGEDLN
PNRRRNQGPDGEDEKIMRNPDRPTNLNLGHAPELEDDTLERKRLTKISDPEKWEIKQMIA
ANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKN
PDGSLSQAAMMQSALAKERREVKQCQREAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRG
IGMMPTDIPEWKKHAFGGNKASYGKKTAMSILEQRESLPIYKLKEQLIQAVHDNQILIVI
GETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIR
FEDCTSPETVIKYMTDGMLLRECLIDPDLGQYAIIMLDEAHERTIHTDVLFGLLKKTVQK
RTDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEVLYCKEPETDYLDASLITVMQI
HLTEPPGDVLVFLTGQEEIDTACEILYERMKSLGPEVPELIILPVYSALPSEMQTRIFDP
APPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQR
AGRAGRTGPGKTYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMD
APPMETLITAMEQLYTLGSLDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLT
IVSMLSVQNVFYRPKDKQALADQKKAKFHQAEGDHLTLLAVYNSWKNNKFSNPWCYENFI
QARSLRRAQDIRKQMLGIMDRHKLDVVTCGKATVRVQKAICSGFFRNAAKKDPQEGYRTL
IDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPT
RLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcattctccatcaaattccaaatatgtctgctgctggtttcttctgaaaacaaa
acaatctcgtggagaatggcaaatatcggagataacgagctagaacagctcgaatacctt
tcgttagtatccaaagtgtgcacagaactcgacaaccatctggggataagcgataaagat
ctagccgagtttgtcatcagccttgctgaaaagcaaccaacgtttgatggctttaaatca
cttctattgaaaaatggcgcagaattcacagattcacttgttggcaatttgctcagactt
attcaaacgatgcggcctccatcaaagacatctacaaacaaagctgttgagcctgtggtc
aagcagaagagtgagaaagacaaactgaaggagttgtttcctgcgttatgcaggccagac
gatccggctcctaaggccatactagacgaagacgatgtgaaaatcgcagacgccgccatg
aaggagttggagatgttcatgcccagtgtgagtagatcagactcaaagagcaagagcagg
tcggacaaaaagaggcggcacagcagaagccggagccgagacagggacaggaggaggcgt
catcgttctcggtcccgctctcgctctagatctcgatctagggaccgtgatcgtcagaga
gaccgcgaccgtgagagggaccgcgaccgtggtaagaaacgtgcgtctcgctggagtgag
cgcagtcgcacccccagcccccacagagaccgagacagggacacaaaggaaggctcggac
cggtggaaggacaaacatgtggaccgcccaccaccagaggagcctaccgtgggagacata
ttcaacggcaaaatcaccagcatcatgcagtttggctgctttgtgcaactggaggggctg
aggaaacgctgggaggggttggtgcacatctctgagctacgcagagagggacgtgttgcc
aatgtggctgatgtggtccagaaaggtcaacgagtcaagatcaaggtgctgtccttcact
ggctccaagaccagtctcagcatgaaggatgtggaccaggaaactggggaggacctgaac
cccaacagaaggaggaaccagggccctgatggtgaggacgagaaaatcatgaggaacccc
gaccgcccaaccaacctcaacctgggccacgcccctgagttggaggatgacacactggaa
cgcaagagactgaccaagatatctgaccccgagaagtgggaaatcaaacagatgattgct
gctaatgttctttctaaagaggagttccctgactttgacgaggagactggtatcctcccc
aaagttgatgacgaagaagatgaggacctggagattgagctggtggaggaggagcctccg
ttcctgagaggacacactaaacagagtatggacatgagccctgtcaagattgttaagaat
ccagacggttcgctgtcccaggctgccatgatgcagagtgcattggctaaggagaggagg
gaggtgaagcagtgtcagcgagaggctgagatggactctatccccatgggcctgaacaaa
cactgggtagaccctctgcctgatgttgatggaaggcagattgcagccaacatgagagga
attggcatgatgccaactgacatcccggagtggaagaaacatgcctttgggggcaacaag
gcctcttacggcaagaagacggcaatgtccatcctggagcagagagagagcctgcccatc
tacaagctcaaagagcaactcatacaggctgtccatgataaccagatcttgattgttatt
ggagagactggttctgggaaaactacccagatcacccagtacctggccgaggcgggctac
accactcgggggaagatcggctgcactcagccccgtcgtgtggcagccatgtctgtggcc
aagagagtttctgaagagtacggttgctgtcttggccaggaggtgggctacaccatccgt
tttgaggactgcaccagccctgagacggtgatcaagtacatgacagacggtatgttgctg
agagagtgtttgatagatccggaccttggccagtacgccatcatcatgttggatgaggcc
cacgagaggaccatccataccgatgtgctcttcggtctgctcaagaagacggtgcagaaa
cgcacagacatgaagctgattgtcacttcagccacgctagatgccgtcaagttctcccag
tacttctacgaagcgcccatctttaccattccaggacgcacctatccagtggaggtgctc
tactgcaaagagcctgagacggactacctggacgccagtctcatcaccgtcatgcagatc
cacctgaccgagcctccaggtgatgtcctggtgtttctgacgggtcaggaggagattgac
accgcttgtgagatcttgtatgaacggatgaagtctctgggacctgaagtgcctgaactc
atcattctacctgtctactctgcgctgccaagcgagatgcagacccgtatctttgaccct
gctccccccggcagcagaaaggttgtcattgccactaacattgctgagacgtcgctgacc
attgacggtatctactacgttgtggacccaggatttgtgaagcaaaaggtgtacaactcc
aagactggtattgaccagctggtggtgactcccatttcacaggcccaagccaagcagcgg
gctggtagagctggaagaactggcccagggaagacctacaggctgtacactgagagagca
tacagagacgagatgctcaccaccaatgtgcctgagatccagagaactaacttggccagc
actgtgctgtccctcaaggccatgggcatcaatgacctgctatcgtttgatttcatggac
gctccacccatggagacgctgatcactgccatggagcagctctacactctggggtctctg
gacgatgaagggttgctcactcgtctcggacgcaggatggcggagttccctctggagccc
atgctgtgtaagatgctgatcatgtccgtccacctgggctgcagtgaggagatgctcacc
atcgtctccatgctgtctgtgcagaacgtcttctacaggcccaaggacaagcaggccctg
gctgaccagaagaaggccaagttccaccaggccgagggagaccaccttactctgctggct
gtctataactcctggaagaacaacaagttctccaacccctggtgctacgagaacttcatc
caggctcgttccttgcgcagagcccaggatatccgcaagcagatgctgggtatcatggac
agacataaacttgatgtggtgacttgtggaaaggccacggtgcgtgtgcagaaggccatc
tgcagtggtttcttccggaacgcagccaaaaaggatccccaggagggctaccgtacgctc
attgaccagcaggtggtgtacatccacccctccagtgccctgttcaaccgccagcctgag
tgggtggtgtaccatgagttggtgctgactactaaggagtacatgcgggaggtgaccacc
attgacccacgctggctggtagagttctcgccggcctttttcaaagtgtccgaccccacg
cgtctcagcaaacagaagaagcagcagcgcctcgagcccctctacaaccgttacgaggag
cccaacgcttggagaatctcccgcgcctttcggcggcgctag
DBGET
integrated database retrieval system
