Oncorhynchus mykiss (rainbow trout): 110499162
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Entry
110499162 CDS
T07259
Symbol
ercc4
Name
(RefSeq) DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03420
Nucleotide excision repair
omy03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
110499162 (ercc4)
03460 Fanconi anemia pathway
110499162 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
omy03032
]
110499162 (ercc4)
03400 DNA repair and recombination proteins [BR:
omy03400
]
110499162 (ercc4)
DNA replication proteins [BR:
omy03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
110499162 (ercc4)
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
110499162 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
AmiA-like
Motif
Other DBs
NCBI-GeneID:
110499162
NCBI-ProteinID:
XP_021431789
Ensembl:
ENSOMYG00000034286
LinkDB
All DBs
Position
20:22340729..22347757
Genome browser
AA seq
912 aa
AA seq
DB search
MYALGVIFLQLMICRTRREMAGQLLEFETEMFLSLFGSDGLLVTAEGMGIDRILLQFMRV
YSEEGSLVLLLNTTTPEQEFFTEQLRAEGVSHLPRTVTSDVQSTERYEVYTQGGVLFVTS
RILVVDFLTDRIPAHLISGILVYRAHKIIESCQEAFILRLFRQKNKTGFIKAFTDKATSF
SSGFCQVERVMRNLFVKKLFLWPRFQASVNSVLDRHKPEVVELHVSLTPAMRAIQSSVLD
IMNACLKELKRYNPTLEAEDLSLENTLGNAFEKTIRHYLDPLWHQLGAKTKSLVQDLKIL
RTLLLYLTQYDCVTFLNLLESLRSSQKNFGSNSGWLFLDSSTSMFINARSRVYCIPESKK
KLKVGADTEKQQSTSEVKRVLVLEQNPKWEALTEVLQEIEKENKSSELKPGHILICASDD
RTCSQLHEYISRGSDSLLNRLYARTIGKRDALFDPDAHKQEGQSWARKQQPEKETKGKKA
KGNAATKPNSKSKKRPSLTLTQMVGNREGEVMGSSGDEGGLLEKEEEEELKLDLSSDAYY
GVLKEPLTVIHPLRGCTDPYSLTRVLHEVEPSFVVLYDAELSFVRQLEIYKASRPGKSLR
VYFLIYGGSTEEQRYLTGLAKEKQAFEHLIREKATMVVPEEREGREDTNLDLSRSQEPAY
STTNTRKAGGQEQPKEPSRVIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTADTCV
ERKSVSDLIGSLQSGRLYTQCLSMTRYYRKPVLLIEFDSAKPFSLMARTDFRQEISANDV
TSKLTLLTLHFPRLRILWCPSPHATAELFQELKKGRPEPDAAAAQAITAESDTVAESADL
FNPGPYDFLLRMPGVNAKNYRALVKHADSLAHLAKLSQERLAQILGHAGNGKSLYEFLHN
TVDIPAPAQKSK
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcacttggggttattttcttacaactgatgatatgcaggacacggagggagatg
gctggtcaactacttgaatttgagacggagatgttcctgagtttgtttggctcggacggg
ctgctggtgactgcggagggcatggggatagaccgcatcctgctgcagttcatgcgggtg
tactccgaggaggggagtctggtgctgctgctgaacactaccacgcccgagcaggagttc
ttcacagagcagctgcgagctgagggagtgagccacctgccccggacagtgaccagtgat
gttcagagtacagagcgctacgaagtttatacacagggaggggtcctgtttgtcaccagc
cgtatcctagtggtggacttcctcactgacaggatacctgcacacctcatctcgggtata
ctggtgtaccgggctcataagataattgagtcttgccaggaagccttcatcttgagactg
ttcagacagaagaataagacaggcttcattaaggccttcacagacaaggccacatccttc
tcctcaggcttctgtcaggtggagagagtcatgaggaacctctttgtcaagaaacttttc
ctctggcccaggttccaggcgtcagtgaactcggttttggacagacacaagccagaggtg
gtggagctgcatgtgtctctgaccccggccatgagggccatccagagctctgttctggac
atcatgaacgcctgtctgaaggagctgaagcgctacaaccccacgctggaggcagaggac
ctctccctggagaatacccttgggaatgccttcgaaaagaccatccgtcactacctggac
cctctgtggcaccagctgggagccaagaccaagtctttggtccaggacctgaagatctta
cgtaccctgctgctctacctcacccagtacgactgtgtcaccttcctcaacctcctcgag
tcactccgctctagccagaaaaactttggaagcaactctgggtggttgttcctggactcc
agcacctccatgtttattaacgccaggagtcgggtgtactgcattcctgagtccaagaag
aaactcaaggtgggagctgacacagaaaaacaacaaagcacttcagaggtgaaaagggtg
ctggtgctggagcagaacccaaagtgggaggctctgacagaggtgctgcaggagatagag
aaggagaacaagagctctgaactcaaaccaggccacattttgatctgtgccagtgatgac
agaacctgttctcaacttcatgagtacatcagtcgtggctcagactccctactcaataga
ctctacgctcgcaccattggcaaaagagatgccctgttcgacccagacgcacacaaacaa
gagggccagagttgggccagaaaacaacagcctgagaaagagaccaaaggaaaaaaagcc
aaagggaatgcagcaaccaagccaaactcaaagagtaaaaagaggccgtctctgaccctg
actcaaatggttggcaacagagagggagaagtgatgggcagcagtggggatgagggaggc
ctgttggaaaaggaggaggaggaggagctaaagttagacttgtcgtctgacgcctattac
ggtgttctgaaagagccattgactgttatccaccctctgaggggttgcactgacccctac
agtctgacgcgggtactgcacgaggtggagcccagttttgtggtgctttatgacgccgag
ctcagctttgttcgtcagctggagatttacaaagcctccagaccggggaaatcactgagg
gtgtacttcctgatctatggtggctccacagaggagcagaggtacctgactggtctggct
aaagagaaacaagcctttgaacacctcatcagggagaaggccactatggtggttcctgag
gagagagagggaagagaagacaccaacctggatctgagcaggagtcaggagcctgcttac
tctactaccaacacacgcaaagcagggggccaggagcagcccaaggagccgtcccgtgtg
attgtggacatgcgtgagttccgcagtgagctcccttccctcctccaccgacgcggcctg
gacatcgagcctgtcaccctggaggtgggcgattacatcctcactgccgacacctgcgtg
gagcgcaagagcgtcagtgacctgattggctcgcttcagagcggacgcctctacacccag
tgcctgtccatgacgcggtactaccggaagcccgtcctgctgatcgagttcgactcggcc
aagcccttttccctgatggcccgcaccgacttccgccaggagatctcagctaacgacgtc
acctccaagctgaccctcctcaccctgcacttcccccgcctcaggatcctttggtgcccc
tccccacacgccaccgcagaacttttccaggagctgaagaaaggtcgacccgagccggat
gccgccgcggcccaggccatcactgccgagtcggacacggtggcagagtcagctgacctc
ttcaaccctgggccatacgacttcctgcttcggatgccaggggttaatgcgaagaactac
agggctctggttaaacacgcagatagcctggcacacctagccaaactaagccaggaaagg
ctagcacagattctggggcatgctggcaatgggaagtcgctctatgagttcctgcataat
actgtggacatccctgcccctgcacagaaaagtaaatag
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