Oncorhynchus mykiss (rainbow trout): 110499288
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Entry
110499288 CDS
T07259
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110499288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110499288
03036 Chromosome and associated proteins [BR:
omy03036
]
110499288
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110499288
Coactivators
SAGA/TFTC/STAGA complex
110499288
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
110499288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
110499288
NCBI-ProteinID:
XP_036814393
UniProt:
A0A8K9X8T5
LinkDB
All DBs
Position
2:89555573..89577445
Genome browser
AA seq
996 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLVSQKTSPATYSNSKREGSTGAVSQFSGK
LRDQAGSLEPPQQGHPKAALNAEPIANQAMPNKIISASTSSITTGGVLNAGTNLQTYGTA
SQTISTAPPGSVTLPALSTSFNRGTILGPAGTSAVTVPNPNITTATTIRTASPGLQSFNG
NTGALKLVNSPAASQVGSGSSTVVSTVSAGNSNIIVSMTSQPPSLPNFTGPQQSAVATTP
TIALQRQPSPMAIASQNGVIDPKVSAVVTQGAGSLGATTSQVMNHSNTVMHTKMVAPNQP
VSAGQSIILGGSPPPVVVNSPISQPQSVASPTLTAGVKPTVNGVGQPTVTIVRPPSAPVM
ATPVQQQRPGLLASTTRTAAPQLAVRPPQKTTIQLPPGFTIPPGMVLVRTDTGQLVMVTQ
QVLAQAQAKTQQGQAAVSNISPQPGISTAGANVRVSTPSQAPGTPQAVRLASPFQARMAQ
SPSPSSPAIQKAITVAPAGASVSVKMTTPQKAQSVITGGQALVKPGAVRPTITLNTAAAS
ASGSPIATVSQEMQENVKKCKNFLSTLIKLASHNSPSPDTSKNVKTLVQDLLDAKIEPEE
FTTSLQAELKSSPQPYLIPFLKKSLPALRLSLLNNQQSLLASTSASALAVPSTSTIRPRL
PTTISPATGIVRTPTTALGVRRPGVQGVQTRMPMVITQTIRPQGVVTRGPSIIPGRSPVG
IGAQASANQKKLNEPGGGTFRDDDDINDVASMAGVNLNEENARIMATNSELVGTKIRSCK
DEAFLPPGLLHRRIMEAAKRFGVTEVPAETVNYISHATQARLRSMLEKVSTIAQHRTDGG
KDEEWYEPSTDVRAQLRFFEQLERMEKQRKDEQEREVLLKAAKSRARQEDPEQARLKAKA
KEMQQAEQAQIRQREANLTALAAIGPRKKRKMDSPGGSTSGTEVASGSGDGSSTAASSRQ
QLRQRITRVNLRDFIFCLEQERATSRSLLLYKALLK
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcaatgaggtagacgaaaaagct
gtaagcgacttagtgggctctttggaatcgcaacttgtcagccaaaagacttcgcccgcc
acatattctaatagcaagcgagaaggatctacgggcgctgttagccagttctcagggaaa
ctgcgtgatcaagcggggtctctggagccgccacaacaaggacacccaaaagcggcgtta
aacgcggaacccatcgcgaatcaggcgatgcccaataagattatcagcgcttccacctct
tccatcactactgggggtgttttaaacgctggtactaatctacaaacatatggaaccgca
tctcaaaccatttccaccgcaccaccaggatcggtaactttgcctgctctgtcgactagc
ttcaacagagggactattttgggtcctgctggcacatcagcggtgactgttcccaatcca
aacatcacaacagcaacaactatcaggactgcttcacctggtttacagagttttaacggg
aacactggagctctgaagttggtcaactcgcctgcagcttcccaagtcgggtcaggcagc
agcactgttgtaagtactgtcagtgcgggcaattccaatatcattgtgtccatgacttca
caacctccttctctgccaaactttactggacctcaacagtctgcagtggctactactccc
actattgcattgcaaagacagcccagccccatggccattgcctcacagaatggagtaata
gaccccaaggtttctgcagtggtcacacagggtgcaggttccctaggggccaccacctct
caggtcatgaaccacagcaacactgtcatgcacactaaaatggtggcacccaaccagcca
gtctctgctggccaatcaataattctcggagggtctccccctcctgttgttgttaactca
ccaataagccagccacagagtgtggcgagtcccactctcacagctggggtgaaaccaact
gttaatggagttggtcagcccacagtgaccatcgtgaggccccccagtgctcctgtgatg
gctacccccgtacagcagcagagacctgggctgttagcaagtaccacgaggactgctgca
ccacagctggccgtcagaccaccacaaaagaccaccattcagttaccccctggatttacc
ataccacccggtatggtgctggtgcgtacggacacgggacagctagtgatggtgactcag
caggttctagcccaggcccaggctaagacccaacaaggccaggctgctgtctccaacatc
tccccccagcctggaatctccaccgctggggccaacgtcagagttagcactcccagccag
gcccctggtacgccccaggctgtccgtctggcgtcccctttccaggcaagaatggcccag
tccccctctccctctagccctgctatacagaaggccataaccgtggcacctgcgggtgcg
tctgtgtcagtgaaaatgaccacccctcagaaggcccagtctgtgatcacagggggccag
gccttggtcaagcctggtgctgtacggcccactatcaccctgaacactgcagcagccagt
gcctctggaagccctattgcaacagtctcccaggaaatgcaagagaatgtgaagaagtgc
aagaacttcctgtccaccctgatcaaactggcgtcccacaactccccctcccctgacaca
tctaagaacgtcaagaccctggtgcaggatctactggatgctaaaatcgagcctgaggaa
ttcaccacgagtctgcaggctgagctgaaatcctctccacagccgtacctcatccccttc
ctcaagaaaagcctccctgccctgcggctgtcccttctcaacaaccagcagtctcttctg
gcctccacctccgcttctgccctggccgtcccctccacctccaccatcaggccccggctc
cccaccaccatcagccccgccacaggcatcgtcaggacacctaccactgccctgggtgtg
agaagaccaggggtccagggggtccagacccgcatgcccatggtcatcactcagactata
cgaccgcaaggcgtagttacaagaggaccctctattatcccgggcagaagtcctgtgggc
attggtgcccaggcctctgccaatcagaagaagctgaatgagcctggaggtgggacgttc
agagatgacgatgacatcaatgacgtggcgtccatggcgggggtaaacctgaacgaggaa
aacgcccgcatcatggccaccaactctgagctggtgggcaccaagatccgctcctgtaag
gacgaggccttcctccccccaggcctgctgcacagacgcatcatggaggctgccaagaga
tttggggtgaccgaggtcccagctgagacagtgaactacatctcccatgctacccaggcc
aggctgagatccatgctggagaaagtgtccactatcgcccagcaccgcaccgacgggggc
aaggatgaggaatggtatgagccgtcgacagacgtcagggcccagctccgcttttttgag
cagctggaaaggatggagaaacagaggaaggacgaacaggagagagaggtcctactcaag
gctgccaagagtcgcgccagacaggaggacccagaacaagctcggttgaaggcgaaagct
aaggagatgcagcaggcggagcaggcccagatccggcagcgtgaagccaacctcactgcc
ctggctgccatcgggccccgtaagaaacgcaagatggactcgccagggggctccacatcg
ggcacagaggttgcttcgggttcaggggatggctcttccacagctgcctcctcccgccaa
cagctccgtcagcggatcacgcgagtcaacctcagggactttatcttctgcctggagcag
gagagggccacatccaggtccttattgctttataaagctctcctgaagtag
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