Oncorhynchus mykiss (rainbow trout): 110499400
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Entry
110499400 CDS
T07259
Name
(RefSeq) nucleolar RNA helicase 2 isoform X2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
omy03009
]
110499400
03036 Chromosome and associated proteins [BR:
omy03036
]
110499400
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110499400
Ribosome biogenesis [BR:
omy03009
]
Eukaryotic type
Pre-60S particles
Helicases
110499400
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
110499400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Gly_acyl_tr_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
110499400
NCBI-ProteinID:
XP_021432200
Ensembl:
ENSOMYG00000037885
LinkDB
All DBs
Position
20:35438980..35446541
Genome browser
AA seq
747 aa
AA seq
DB search
MPSKIIFETEDIGMEGEMDISAGSTTPKKIKEKKTKEGKKIKKQKTVVEEEPDCEPPAPK
KKKKKNKEKEDKTNGGAEVDVNSNAEESPLKDNTSHSNEESADNDKATEKKKKKKKKEKK
TDEKIIVNGVLPETPTLIAQTNGHTAAITPAQSSEDSDSGKETETPEQKEGAFSNFRISP
NTIKLLQARGISYLFDIQTQTFNSVYEGKDVIGQARTGTGKTLAFAIPLIEKLQNDPDDK
KRGRAPKILCLAPTRELAIQVSKDFKDMTKKLSVTCFYGGSSYNPQLDAIRSGIDILVGT
PGRIKDHLQNNKLDLSQLKHVVLDEVDQMLDMGFAEQVEEILSASYQKDSETNPQTLLFS
ATCPSWVYDVAKRYMRPTYEHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVVQVYS
GSHGRTIVFCETKKDANELSMNASIKQSSQSLHGDIPQKQREITLKGFRSGTFEVLVATN
VAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVEQK
AGITFKRVGVPTANDIIKSSSKDAVRFLDSVPPQAIEYFRVSATKLIEERGAVEALSAAL
AHISGATALEQRSLLNSDTGYTTMTMNCSQELQNIGCAWRGLKEQLGEEIDNMIRGMTFL
KGKMGVCFDVPADKVKEYQDAWQDGRRWQLSIATELPELEEKPRMGGDRGYGRSFGGQGG
GRGFRNGGGNWRGGGNHKRSFSSAFDY
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaaagattatttttgaaaccgaagacatcgggatggaaggtgaaatggacatt
agtgcgggcagtacgacacccaaaaaaataaaggagaagaagaccaaggagggaaagaaa
atcaagaaacagaaaacggttgttgaagaggaacctgactgtgaacctcctgctcccaag
aagaagaagaagaagaataaggaaaaagaggacaaaactaacgggggcgcagaagttgat
gttaacagcaacgcagaagaatcgcctttgaaggacaacacatctcattccaatgaggag
tctgcagacaatgacaaagcaactgagaagaagaagaagaagaagaaaaaggaaaaaaag
acagatgaaaagatcatcgtcaacggagtgttgcctgagactcccacgctgattgcacaa
actaatgggcataccgcggcgataactccagcacaatcaagcgaggactccgacagtgga
aaagaaaccgagacgccagaacagaaagagggagccttctctaacttccgaatctccccc
aacaccattaaactacttcaagcaagaggcatatcttacctctttgacatccaaacacaa
accttcaattctgtgtacgagggaaaggatgtgattggccaggcaagaacaggcactggg
aaaactttagcttttgccattccgctgattgagaaactccaaaatgacccagatgacaag
aagaggggcagagccccaaagattttgtgccttgcgccaaccagagaattggctattcaa
gtatccaaggatttcaaggacatgacaaagaaactgtctgttacttgtttctatggtggg
agctcctacaacccccagcttgatgcgatccgcagtggcatcgatatcctagtgggaact
ccaggtcgtatcaaggaccatctacagaataacaaactggacctgtctcaattgaagcac
gttgtattggatgaagtggaccaaatgcttgatatgggctttgcagaacaggtcgaggag
atactgtctgcgtcttaccaaaaagactctgagaccaacccccagaccctgctcttctct
gccacatgcccatcatgggtgtatgatgtggcaaagaggtacatgagaccaacctatgag
catgtggacctcattggcaaaaagacccagaaagctgccaccacagtagagcaccttgcc
atagcgtgtcactggtcccagagggctgcagtcattggggatgtggtgcaggtttacagc
gggagccacggccgcaccatcgtcttctgtgagaccaagaaggatgccaacgagctgtca
atgaatgcctccataaaacagagttcccagtcacttcatggggacattcctcagaagcag
agggagattacactgaaaggcttcagaagtggcaccttcgaggtcttagtggccaccaac
gttgctgcccgcgggttggacatcccagaggtagacctggtcgtgcagtgctcaccccca
aaggatgtagagtcctacattcaccggtcaggtcgaactggtcgggctggcaggactggc
gtctgcatctgtttctaccaacgcaaagaggaagaccagctccgatatgtagaacagaaa
gcaggcattacatttaagcgagttggagtgcccactgccaatgacatcatcaaatcctcc
agtaaagacgcagtgaggtttttagactctgtgcctccccaagccattgagtatttccgc
gtgtctgctaccaaactgattgaggagcgtggggccgtggaggccctgtctgccgccctg
gcacacatatcaggagccactgccttggagcagaggtccctcctcaactctgacacgggc
tacaccacaatgacaatgaactgctcccaggagctgcaaaacattggctgcgcctggcgt
ggtctgaaggagcaactgggagaggagattgacaacatgatccgggggatgaccttcctc
aagggcaaaatgggagtctgttttgatgtcccggctgacaaggtaaaggagtaccaggat
gcctggcaggatggtagacgttggcagctgtcaatcgccacagagcttcctgagctggag
gagaaaccgcgcatgggtggtgaccgtggatatggacgttccttcggaggacagggaggt
ggccgtggcttcagaaacggcggcggcaactggagaggtggaggcaatcataaacgcagc
ttcagcagtgcgtttgattattaa
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