Oncorhynchus mykiss (rainbow trout): 110500599
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Entry
110500599 CDS
T07259
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy02010
ABC transporters
omy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
110500599
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110500599
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
omy02000
]
110500599
Transporters [BR:
omy02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
110500599
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
AAA_23
MukB
Motif
Other DBs
NCBI-GeneID:
110500599
NCBI-ProteinID:
XP_036812413
LinkDB
All DBs
Position
21:complement(46357709..46581508)
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AA seq
1918 aa
AA seq
DB search
MSCSIPLSPDIVLLGAFCKTLIDTLEGTPGLYVVWSTFRPLIQGKVLYTPDTPATRLMVK
EANSTFNALAMIKELAEAWEDFGHLVWDYFQNGRQVNALRALLDNPVFVALLNQRLKGTR
WTAELLANFLYNGPPEGRPTGMPTYDWRNAFNTTSQILDLLKKFIGCLNLDKFEAADSER
HLMTRALELLESNRYWAGIVFEDLNPAASHPPPYVKYKIRMDIDKGERTNKIKERGWSPG
ARSNSFNDLRYIWGGFAYLQDMMDHGIIRAHTNKSQPLGVFAQQMPYPCYVDDVFLRSLA
RSLPLYMTLAWIYSVAMIVKGIVMEKEARLKETVRMMGLRSSTYWLSWAVSSMLPLAVSA
LLLTLILKYGKVLQYSDPSVIFVFMLVFCVATIMECFFISVFFSKANLAAACGGLIYFVL
YLPHLLCYAWRDVLGFQVKIAVSLLSCVAFGYGCENFAKYEEQGIGIQWSNIAQNPEGDR
YSFIVSIIMMLIDALIYWLLTWYIENVFPGQYGIAKPWSFPFMASYWCGMSAVPNADPSQ
FKDPMEYNDYLEKPPPNMKAGVSIRNLVKIYKTGKKLAVDGLSVDFYENHITSFLGHNGA
GKTTTMSILTGLFAPTSGTALINGYDIRTDMDTIRKHLGMCPQHNVLFNDLTVEEHIYFY
ARLKGRSRDEVKTEMDQMIKDVGLPHKRKELAKNLSGGMQRKLSVAIAFVGGSNIVILDE
PTAGVDPYARRGIWELLLKYKKGRTIILSTHHMDEADILGDRIAIISHGKMCCYGSSLFL
KKYFGSGYYLTLVKAGNEQITNERSGVKQGQEKEETDEPLRRTSLDEGIASQNWSNSDPT
ELTAVSKLVRRHVPEAVFLESIGQEITYILPYSGAKDGTFALLFKELDLEMADIGFTNYG
ISDTTLEEIFLKVAEDTGVDVEIPDNKAPLVRDKTRSSRESKRQRQSLTNVGNTSDKVTG
KRAEVKAKFTSRVEDVERVANVNGKGSSVIMGWELIRRQFLALFIKRFHHARRSRKGIIA
QVILPAVFVCLSLIFSVIIPPFAEYPNLELQPWMYGLPQTTFYSNDGPPNNTEVAHVVDS
LVNNPGFGTRCMANNPIPNLPCVPIDSKWTTPSVEPSINNILINGTWSMANPSPNCQCST
PQKTIMLPDCPPGAGGLPPPQRIQNTTDTLQDLTGRNMTDFLLKTYEKAGKKRYGGISVG
GVNSQVRMTEPEIEAVIRDLKSLFNSPQDNTTEQILLNAETLLKELGTRDNVKVWFYNQA
WHGIVSFLNVANNAILRGNLPTGRDPREYGISSSSHPLNLTKVQLSYQALAATSTDLVVS
ICVIFAMSFIPASFVLFLIQERVNKAKHLQFVSGVNPAVYWVANFAWDICNYIVPCLIVI
IIFLCFQQKAYVSPPNLPALIWLLVMYGWSITPMMYPASFIFSVPSTAYVVLTCVNLFIG
INGSLATFVMELFDDDKISHINDIVKQVLLIFPHFCLGRGLIDMGKNQAMATLFERFGED
RFQDPLSWDMVGKNLCAMAIQGAVMFTITLLIQYKFCYKPRLISGKSFSKEDEDVDVARE
RARVHEGGAENDLLRICDLSKVYSGKNIPAVDRVCLGVPAAECFGLLGINGAGKTTTFKM
LTGDIAVSGGEAFLNRYSVRTEMRDVHQNMGYCPQFDALNDLLTGREHLEFYARLRGVPE
KEVTMVAEWGIQKLGLVKYSNKAAGTYSGGNKRKLSTAMALIGCPPVVFLDEPTTGMDPK
ARRFLWDCILSVIKEERSVILTSHSMEECEALCTRMAIMVNGQFKCLGSIQHLKSRFGDG
YTVIVRVGGSPPALGPVEEFVHETFPGSILKEKHHNTLQYQLPLSKGALVSIFSQFTTHQ
QRLGVEDYSVSQTTLDQVFVNFARYQHEEDNHATYDNKVDVSGEMPMKTQNSPVPESA
NT seq
5757 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgctccattcctctctccccagacattgtgttattaggtgccttctgcaaaaca
ttgattgatactcttgagggaactcctggcctatatgttgtctggagtacgtttcggccc
ctaatccaagggaaggtcctctacacccctgacacacctgccactcgactaatggtgaaa
gaggcaaatagcacattcaatgcattggccatgataaaagagctggcggaagcttgggag
gatttcggacatcttgtttgggactactttcaaaatggccgccaagtcaatgcactgcgg
gccctgctggataaccctgtgtttgtagccttgctcaaccaacggctcaaaggcacaaga
tggacggcagaactgctcgccaacttcctgtacaatgggccccctgagggtcgccccacg
ggcatgccgacgtatgactggcgcaacgcgttcaacaccacaagccaaatcctggacctc
ctgaagaagttcattgggtgcttgaacctggataagtttgaggctgccgacagcgagaga
catctcatgactagagcgttggagctactagagagcaataggtactgggctggtatcgtt
ttcgaagacctcaaccctgccgccagccacccccctccttacgtcaagtacaagatccgc
atggacattgataagggggagcgtacgaataagatcaaagaaaggggatggtctcctggg
gcccgtagcaactcctttaacgacctgcgctatatatggggaggcttcgcctatctgcag
gacatgatggaccatggcataatacgggcacacacaaacaaatcccagccgctcggcgtg
tttgcccagcaaatgccatatccctgctatgtggacgatgtgttcctccgctcgctggca
cgctctctgcccctgtacatgaccctggcctggatctactcggtggcaatgatcgtgaag
ggcatcgttatggagaaggaggcgcgtctgaaggagacagtgaggatgatggggctgagg
agctccacctactggctgagctgggccgtgtccagcatgctgccgctggctgtcagtgct
ctcctcctcaccctcatcctcaagtatgggaaggtgctgcagtacagcgacccctctgtg
atcttcgttttcatgctggtcttctgcgtggccaccatcatggagtgtttctttatcagc
gtgttcttctccaaggccaacctggcggcagcgtgcgggggcctcatctacttcgtcctc
taccttccgcacctcctctgctatgcctggagggacgtcttggggttccaggtcaaaatc
gctgtgagtttgctgtcgtgtgtggccttcgggtatggctgtgagaacttcgccaagtat
gaggagcagggcatcggtatccagtggagtaacattgcccaaaatcctgagggagatcgg
tacagtttcatcgtgtccatcatcatgatgctcatcgacgccctcatctactggctgctc
acgtggtacatcgagaacgtcttcccaggccagtatggaatagccaagccgtggtccttc
cctttcatggcctcctattggtgcgggatgtctgcggtgcccaacgctgaccctagtcag
ttcaaggatcccatggaatacaatgattatttggaaaagccaccacccaatatgaaggca
ggggtctcaatcaggaaccttgtgaagatctataaaacgggaaaaaagcttgctgtggat
ggacttagtgtggacttctacgagaatcacatcacctctttccttggtcacaatggcgca
ggaaaaacaaccactatgtcgatcttgacgggactgttcgctccaacttcggggaccgct
ctcataaatggttacgatatccgcacggacatggacaccattaggaagcatctgggaatg
tgccctcagcacaatgtcttgttcaatgaccttacagtagaggagcacatctacttctat
gccagattaaagggtcgaagccgtgatgaagtgaaaaccgagatggaccaaatgatcaag
gatgtagggctgccgcacaaacgcaaggaacttgccaagaacctgtcagggggaatgcaa
aggaaactgtcggtggccatcgcattcgtgggaggatccaacatcgtcatcctggatgaa
cccacagcaggggtggatccgtatgcccggagagggatatgggaacttctgttgaagtac
aaaaaaggtcgcacaatcatcctctccactcatcacatggatgaggccgacatcttggga
gaccgcattgccattatctctcacggcaagatgtgttgttacggctcctccctgttcctg
aaaaaatactttggcagtggctactacctcactctggtcaaggccggaaatgagcaaatt
accaacgagcgcagcggagtcaagcagggccaggagaaagaggagacggatgagcccttg
aggagaaccagtctggatgaagggattgcaagccagaactggagcaactctgaccccaca
gagcttacagctgtcagtaagctggtgcgtcggcatgttcccgaggcagtgttcctggag
agcatcggccaggagatcacctacatcctgccttacagcggggccaaggatggcaccttc
gccctccttttcaaagagctggacctggagatggctgacattggcttcaccaactacggc
atctcggataccacactagaggagattttcctcaaagtggcggaggacacaggtgtggat
gtggaaattccagataacaaagcacctttggtaagagacaagacaagaagttcaagggaa
tccaagcggcaacggcaaagcctgaccaatgtagggaacacttcagacaaagtgactggg
aaaagggctgaagtgaaagccaagttcacaagcagagtggaggatgtggagagagttgcc
aatgtgaatgggaagggctccagtgtgataatgggatgggaactaatccggagacaattc
ctggccctcttcatcaaacgtttccaccacgcacgcaggagccgcaaaggcatcattgct
caggtgattctgcccgctgtcttcgtctgcctgtctctcatcttttccgtcatcattccc
ccttttgctgagtaccctaatctggagctgcaaccatggatgtacgggctgccccaaacg
acattctacagcaatgatggaccgccaaataatacagaggttgctcatgtggtggactct
ttggtgaataatcctgggtttgggactcgctgcatggctaacaaccctataccgaatctc
ccgtgtgtccccattgattctaaatggactactccctcagtggaaccctctatcaacaac
atcttaatcaacgggacctggagcatggccaacccttcccctaactgccagtgcagcact
cctcaaaagactatcatgctgccagattgcccacctggagccggggggctgcctccccct
cagaggatccagaatactacggacacactacaggacctgacagggaggaacatgacagac
ttcctcttgaagacgtatgagaaagcaggcaaaaaaaggtacggagggatttccgttgga
ggagttaactcccaggtcaggatgactgaaccggaaattgaagctgtaatcagggatttg
aaaagcctattcaattccccccaggataacacgactgagcagatccttctgaacgccgag
acgctcctgaaagagcttgggaccagggataacgtcaaggtgtggttctacaaccaagcg
tggcacgggatcgtttcgttcctcaacgtggccaacaacgccatcctgaggggcaacctg
cctacgggccgtgaccccagggagtacggcatctcctcctccagccaccctctcaacctc
accaaggtgcagctctcctaccaggcacttgctgccacctccaccgatttggtggtgtcc
atctgtgtcatcttcgccatgtcctttatcccagcgagctttgtcctcttcctcatccag
gagcgtgtcaacaaagccaagcacttgcagtttgtcagcggcgtcaacccggccgtctat
tgggtcgccaacttcgcctgggacatatgtaactacatagtcccgtgtctaatagtcatc
atcatcttcctgtgcttccaacaaaaagcctatgtgtcccctcctaacctaccagctttg
atttggctacttgtaatgtatgggtggtctatcacacccatgatgtacccagcctcgttt
atcttcagtgtccccagcacggcctacgtggtgctgacctgcgtcaacctcttcatcggc
atcaatggcagcttggccacatttgtcatggagctgttcgatgatgataaaatctcgcac
atcaatgacattgtgaagcaggtgctgctgattttcccgcacttctgtctgggtcgaggg
ctcatcgacatgggcaagaatcaggcaatggccactttatttgaacgcttcggggaagac
cgtttccaggaccccctcagctgggacatggtggggaagaacctgtgtgccatggccatc
caaggggcagtcatgttcaccatcactctccttatccagtataaattctgctacaaaccc
agactgatttctggaaagtcattctccaaggaggacgaagatgtggatgtcgctcgggaa
cgtgcacgcgtccatgaaggcggtgccgagaatgacctgttgagaatctgcgatctctct
aaggtgtactcagggaagaacattcctgctgtggacagggtgtgtttgggtgttccagcc
gcagagtgctttggactgctagggattaacggggcaggaaaaacaaccaccttcaagatg
ctgacgggggacatcgccgtctccggaggagaggccttcctaaacagatacagcgtacgg
acagagatgagggacgttcaccagaacatgggctactgcccgcagtttgacgccctcaac
gaccttctcaccggacgagagcatctggagttctacgccagactacgaggcgtaccggag
aaggaagtcaccatggtggcagagtggggcatccagaagcttggcctggtcaaatattcc
aacaaggcagccggtacctacagcggagggaacaaacgcaagctctccactgccatggct
ctgattggttgtcctcctgtggtattcctggacgagccaacgacagggatggaccccaaa
gccagacgcttcctgtgggactgtatcctgagtgtcatcaaagaggaacgctcggtcatc
ctaacatcacacagcatggaggagtgtgaggccctgtgcacacgcatggccatcatggtg
aatggacagttcaagtgtctgggcagcatccagcatctcaagagcaggtttggggacggc
tacactgtgatcgtgagggtgggcggctcgccccccgctctgggccccgtggaggagttt
gttcacgagacctttccgggtagcatactgaaggagaagcaccacaacactctgcagtac
cagctccccctcagcaagggcgctctggtcagcatcttcagccagttcaccactcatcag
cagaggctgggtgtggaggactactctgtctcccagaccactttggatcaggtctttgtc
aactttgccaggtaccaacatgaggaggacaaccatgctacttatgacaacaaagtggac
gtgtccggcgaaatgcctatgaaaactcagaactcacctgtcccagagagcgcctga
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