Oncorhynchus mykiss (rainbow trout): 110500876
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Entry
110500876 CDS
T07259
Name
(RefSeq) multiple PDZ domain protein isoform X1
KO
K06095
multiple PDZ domain protein
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
110500876
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Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
L27_2
MPDZ_u10
L27_1
Shufflon_N
Motif
Other DBs
NCBI-GeneID:
110500876
NCBI-ProteinID:
XP_036813905
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All DBs
Position
21:47034102..47113062
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AA seq
2101 aa
AA seq
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MIETMDTQRALQAVERLQAKLKERGEVPTEEKLSLLKSVLQSPLFHQILALQKSVQLLKD
QGGGVTATFGGDLSECYTTAHANGGHLAYPESSTGTQINGKPSPEEFEHIIRSMAQGRYV
THMELVKPLSGGLGFSVVGLRSENRGELGIFVQEIQPGSVAHCDGNLKETDQILAIDGQP
LDQTVTHQQAIGILQRASECVQLTVARGPIPQLASPVVSRTPSAASTLSAHSSAAHWNHV
ETIELVNDGTGLGFGIVGGKNTGVIVKTILPGGIADQDGRLHSGDHILTIGDTDLYGMGS
EQVAQVLRQCGNRVKLVITRGPPEETSVVPMALPTVTEQQGYEEEEAESFDVGLTKNAQG
LGITIAGYVGDKNSEPSGIFVKSITKDSAVEQDGRIHVGDQIIAVDGMNIQGYTNQQAVE
VLRHTGQTVHLKLVRSGFRPEDIPPAVVPSVIVLPPTPGGRDPTLERTDVVDTTAQGEKQ
YQTLSGESDDSTVKDQLTKNTRDEAKLTEDEELELMKKWQETLGPSNKVVIVQVEKFSES
SGLGISLEANNGHHYIRSVLPEGPVGRCGKLISGDELLEVNGISLIGETHKEVVRILKEL
PVCVYMACCRPAPLLQSDRDSGQTGLDEFSTEPKIKMIFEGYLLSSSAASVQIQGDLSSF
LVPGGSEGAATRENVTEETPGAPLAMWETEIQDIELEKGESGLGFSILDYQDPMDPAKTV
IVIRSLVPEGVAERDGRLLPGDRLMFVNSTNLDNASLEEAVQALKGANIGMVHIGVAKPL
PPYNEEDSPSSSSGISFFLSSTLLVKESDEEEPAEDHLFRAEPALIDSNEGDLTDERALE
HRFSGNEDDTLQASMIALHGSTCSADMDYQTTLQSSTPKRSARLDLLTEHPLVTLFGLAD
DTEPFSPEEKPIVFPLPRSIGGHALTVDDNALTSSDQYLAHHLTQMEPSDLSNSYSPYTD
PEPGLNDLGEPVQSLHFQVESTMAVEDIGEMEGLMKGDEPSVKQSKEEGDEVIITGSHFE
RTITVVKGNSSLGMTVSTIKDGLGMYIRSIIHGGSISRDGRLGVGDLILVINGESMANLT
NTQARAMLRRHSLIGPDLGSACAPEEDLCPFYVITYVPVEYLEEYKTSLEQPKDDICSDA
PLAPIRGIPELPEREDGEGEESELQTATFSNWNQPMKVELKREAGKSLGISIVGGRGMGS
RLSNGEVMRGIFIKHIMADSPAGRNGTLKTGDRIVEVDGVDLSDASHEQAVEAIRRAGNP
VVFLVQSIVHRPRPKSRYSPTSSPVIEYSTALKRLPHHMCQSSTTDTNEERVARRNGDKP
PKREAGKTSSTTLHLSLPVVPHVGETDTDTLTEIPDRPSQTEEEDKFGYRWKNISQRYDS
LPGLLHMIELEKGKTGLGLSLAGNRDRSRMSVFVVGIDPSGAAGKDGRVVVGDELLEING
QILYGRSHQNASSIIKSAPSKVKIIFIRNTDALNQMAVGPVREHGDTLEPQTELETCSSI
APSAIDVDMFKYVQHVILLKEEGGFGITFSEDTKDGLVIQSITEKGPAGKDGSIKSGDKL
LAVEDKPVMGYTVDRVHSLLKKAKSSVKLTICTDKSSPLLPHCTGQATSLASIHRISMAT
LGQSESEPIRSSSRSSTPGTLASSDPVTCPIIPGCETTIDISKGRTGLGLSIVGGCDTLL
GTIIIHEVYEDGAASKDGRLWAGDQILEVNGIDLRVATHDEAINVLRQTPQRVRLSVYRD
EAQYKEEDLWDAFTVELNKKPGQGLGLSIVGRRNDTGVFVSDIVKGGVVESDGRLMQGDQ
ILSVNKEDVRNATQELVAELLKCGVGPIVMEVGRFKAGPFHSERRFSQNSQMSETGSCKV
TPHSLSASSGSLQVDCDSLQHTNQESLDHQEIRSVEFTKGPTDSLGISIAGGVGSPLGDV
PIFIAMINPTSLVVQTHKLKIGDVIVSICGTATEGMSHSQAVTLLKNATGTVVLQVVAGS
DTTVTGPFHEQTATGLSVSGLTATSIFHDDLGPPQYKTITLDRGPDGLGFSIVGGFGSPH
GDLPIYVKTVFGKGAASEDGHLKRGDQIMAVNEQSLEGVTHEDAVGILKRTKGTITLTVL
S
NT seq
6306 nt
NT seq
+upstream
nt +downstream
nt
atgattgagacaatggatacccagcgtgccttgcaggcagtggagcggctccaggccaag
ctgaaggagcggggggaggtccccaccgaggagaagctaagcttgctcaagtcggtgctc
caaagccccctgttccaccagattctggccctgcagaagtctgtccagctcctcaaagac
caggggggtggtgtcacagcaacatttggcggtgacctgagtgaatgctacacaacagcc
catgccaatggcggccatcttgcctacccagaatcctccactggtacacagatcaatggg
aagccgtctcctgaggagtttgagcacatcattcgctccatggctcaggggcgctacgtg
acacacatggaactggtgaagccgctgtctgggggcctaggcttcagcgtggttggtctg
aggagtgagaaccgcggggagctgggcatcttcgtccaggagatccagcccgggagcgtg
gcccactgcgatgggaatctgaaggagacagaccagatcttggccatagacggtcagccc
ctggaccagacagtgacccaccagcaggccataggcatcctgcagagagcgtctgagtgt
gtgcagcttaccgtggccagaggacccatccctcagctggccagccccgtggtgtcccgc
acgccctccgctgcgagcaccctatctgcccactccagtgcggcccactggaatcatgtg
gagaccatcgagctggtcaacgacgggacaggcctgggctttggcattgtgggaggaaag
aacaccggtgtcattgtcaaaaccatcctgcctggaggcatcgctgatcaggatgggcgt
ctgcacagtggggaccacatcctcacgattggggacactgacctttatggcatgggcagt
gagcaggtggctcaggtcctgaggcagtgtggtaacagagtgaagctggtcatcactaga
ggccctccagaggagacctccgtcgtcccaatggcgttgcccactgtcacagagcaacag
ggctatgaggaagaggaggctgaatcgttcgacgtcgggctgaccaagaacgcccagggt
ctgggaatcactatcgccggctatgtgggggacaaaaattcagagccctctggtattttc
gtgaaaagtataactaaagacagtgcagtagagcaagatggccgcatccatgttggggac
cagatcatagccgtggacgggatgaatatccagggctacaccaaccagcaggccgtggag
gtgctgagacacacgggccagacggttcacctgaagctggtcagaagtggcttccgtcca
gaggacatcccacccgctgtggtgcccagtgtgatcgtacttccaccaaccccagggggc
cgagaccccacactggagagaacagatgttgtggacaccaccgctcaaggtgagaaacag
taccagacattgagtggggaatcggatgactccactgtgaaggatcagttaactaagaac
accagagacgaagcaaagttaacagaggatgaagagttggagctgatgaagaagtggcag
gagacgctcggccccagcaacaaagtagtgattgtccaggtggaaaagttcagtgagagc
agtggtctgggcatcagtctggaggccaacaacgggcaccactacatccgctctgttctg
cccgaggggccagtgggccgctgtgggaaactcatcagtggggacgaactgctcgaggtc
aatggaatatccctgattggtgagacccacaaggaagtggtgaggattctgaaggagctt
cctgtctgtgtctacatggcctgttgtaggcccgcccctctccttcagagtgacagggat
tctggccaaacagggttggatgaattttccactgaacctaaaattaagatgatttttgag
ggatatctcctcagctcttcagctgcatcagttcagatacagggagacctcagcagtttc
ctggttcccggaggttccgagggggcggcaacaagggaaaatgtgacggaggagactccg
ggagctcctttggccatgtgggagacggaaatacaggacatcgagctggagaagggagag
agtggactgggattcagcatcttggactaccaggacccaatggatccggccaagacagtg
attgtgattcgctctctggtgccagaaggagttgccgaacgggatggcaggcttttgcca
ggcgatcggctcatgttcgtcaacagcaccaatctggacaacgccagtctggaggaagcc
gtccaggcactgaagggggccaacatcggcatggttcacattggggtggccaagccactg
cctccatacaatgaagaggacagtccgtcgtcatcctctggaatcagtttttttttatct
tcaacactgctggttaaagaaagcgatgaggaggagccagcggaggaccaccttttccgg
gcagagcctgcattgattgactccaatgagggagacctgaccgatgagagggcattggag
catcgcttctctggcaatgaggatgacaccttacaggcatccatgatcgccctgcacggc
agcacatgcagcgccgatatggactaccagactaccttgcagtcctccacacccaaacgg
agtgctcgcctggacttgttgactgagcatcccttggtgacgttgttcggccttgcggac
gacactgaacccttctccccagaggagaagcccatcgttttccccctgcccaggagtatt
ggaggtcacgccctaacggttgacgacaacgcactaactagctccgatcagtacctggcg
catcacttaacccaaatggagccatcggatctgtcaaactcatacagtccgtacactgac
cctgagcctggtttgaatgatttgggggagccggtgcagtctctccattttcaggtggag
tccaccatggccgttgaggacataggggagatggaaggcttaatgaagggggatgagcca
tctgtaaagcagtccaaagaggaaggggatgaggttataatcactgggagtcattttgaa
aggacaatcactgttgtcaagggcaactccagtctcggaatgacagtgagcacaatcaag
gatggcttgggcatgtacatccgcagcatcatccatggaggttccatcagccgagacggc
cgtctgggagtaggggacctaatcctagtcatcaacggcgagtccatggccaacctgact
aacacccaggcccgcgccatgctccggagacactccctcatcgggccagacttgggatct
gcttgtgccccagaggaagatctgtgccctttttatgtcattacctatgtccctgtggag
tatctggaggagtataagactagcctggagcagcctaaagatgacatctgctctgatgca
cctctggccccaataagaggaatcccagaacttcctgagcgggaggatggagagggagag
gagagcgagttacagaccgccaccttcagtaactggaaccagcctatgaaggtggagctc
aaaagagaagcgggcaagtcccttggcatcagcattgtggggggcagagggatgggcagt
cgccttagcaacggtgaggtgatgcggggcatcttcatcaaacacatcatggcggacagc
cccgccggccgcaatggaaccctgaagactggagataggattgttgaggtggacggtgtg
gacctgagtgatgccagtcacgagcaggctgtggaggccatccgcagggcaggaaaccct
gtagtgttcctggtccagagtatcgtccacaggcccaggcccaagtcccgctatagcccc
acttcatcaccagtcatagagtacagcaccgctttaaaacgcttgcctcatcacatgtgc
cagtcctcaaccacggacaccaacgaggagagagtggcgcggcgcaatggtgacaagccg
ccaaagcgggaagcgggaaagacatcgtccaccactcttcacctctctcttcctgtggtt
ccccacgttggagagacagacacggatactctgacagagattcccgacagaccgtcccag
acagaagaggaggataagtttggctacagatggaagaacatcagtcagaggtacgacagc
ctcccagggcttctccacatgattgagctggagaaggggaagactggcctgggccttagc
ctggctggcaaccgtgaccgctcccgcatgagcgtgtttgtggtcgggatcgaccccagt
ggagccgccggcaaagacggtcgcgttgtggtcggggatgaactgttggagatcaacggg
cagattctgtatgggcggagtcaccagaatgcctcctccatcattaaaagtgccccatcg
aaggtcaagatcatattcatcaggaacacagatgctctcaaccagatggctgtgggacca
gtgagggagcatggagacacactggagccccagacagagctggaaacatgttcttccatt
gcaccctcggcgatcgatgtcgacatgttcaaatatgtgcagcacgtcattctgctgaag
gaggagggtggattcggcatcactttcagtgaggacaccaaggatgggcttgtgattcag
agtataactgaaaaaggaccagcaggaaaggacggcagcatcaaatctggagataaactc
ctggctgtggaggataagccagtgatgggctacactgtggacagggtccactctttactg
aagaaggccaaaagctcagtgaaattgactatctgcacagacaagtcatcgccccttctc
cctcactgtactggtcaggcaaccagcctagccagcattcatagaatctccatggctacc
ctgggccagtctgagtcagagccaatcaggagctctagtcgctcgtccacccctggcact
ctggcttcctctgaccctgtgacctgtcccatcatccccggctgtgagaccaccatagac
atctccaagggccgcacaggcctgggcctcagcatcgtggggggctgtgacactctactg
gggaccatcatcattcacgaggtctatgaggacggagctgcctccaaggatgggagactt
tgggctggggaccagatcctggaggtgaatggcattgacctgcgcgtcgccactcatgat
gaagctatcaacgtgctgcgccagacccctcagcgggtgcgtctcagtgtttacagggac
gaggctcagtacaaggaggaggacctgtgggatgccttcaccgtggagctgaacaagaag
cccggccagggcctgggcctcagtatcgtggggagaaggaacgacacaggggtgtttgtg
tccgacatagtgaaagggggcgtggtggagagtgacgggaggctgatgcagggagaccag
atcctgtccgtcaacaaggaggacgtcagaaatgccactcaggagttagtggccgagctg
ctgaagtgtggtgtgggacccatagtgatggaggtgggcagatttaaagccgggcccttc
cactctgagaggaggttctcacagaacagtcagatgagtgaaacaggcagctgcaaggtg
acccctcactctctgtcagcctcctctggaagcctccaagtggactgtgacagcttacaa
cacacaaatcaggagtcactggaccaccaggagatcagaagtgttgaattcactaagggc
cccactgattccttgggcatcagtattgcgggtggagtgggcagtcccctgggtgatgtg
cccatcttcatcgccatgataaaccctactagcctcgttgtccagacacacaaactcaag
atcggtgacgttatcgtcagtatctgtgggactgctactgagggtatgagccacagccag
gccgtcaccctgctgaagaacgccaccggcactgtggtgcttcaggtggtagcagggagt
gataccacagtgaccggcccctttcatgagcagaccgctaccggactctcagtctcaggt
cttactgctactagcatcttccacgatgacctgggacctcctcaatataagaccatcaca
ctggacagaggcccagacggactgggcttcagcatcgttggtggcttcgggagcccacac
ggagacctgcccatttatgtgaaaaccgtgttcggaaagggggcagcatcagaggacggg
catctgaagcgaggggatcagattatggctgttaacgaacagagtctggagggggtcacc
cacgaggatgccgtgggcatcctgaagaggaccaaaggaacaatcaccctgactgtgctt
tcctag
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