Oncorhynchus mykiss (rainbow trout): 110500955
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Entry
110500955 CDS
T07259
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03015
mRNA surveillance pathway
omy03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110500955
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
110500955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110500955
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
110500955
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
110500955
NCBI-ProteinID:
XP_036800877
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All DBs
Position
15:complement(65987932..66009466)
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AA seq
646 aa
AA seq
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MADGVDHIDIYADVEEDFNQESDYPAHDQIDLYDDVISPSANNNGDAPEDRDYLDNLPPP
AGSEGNKSTPPNVVYTYTGKRIALYIGNLTWWTTDEDLTDAIGSIGIKDLLEIKFFENRA
NGQSKGFALVCVGSDTSSRKLLDLLAKRELHGQNPIVTPCNKQSLSQFEMQSRKSPGTSG
GQMSGDGKAGPPTMGPRGGFPMGMGRGRGRFPGPPGPGGDRFPGPIGPGGPPPHFPGSGM
RPPELINHRHQEGHLMDMNFNCFPPGRDGNWRPRGGMQGPPRPPPGPLGPPGPLGPPPPG
QGLPPPMQGPPNRGDRPPPPVMFPGQFGQPPMGPLPPGPPPHGFGPPPGPPPPQQGPPPP
GHFPPRPPGPLGPPLALAPPPHMTGPRPGGPPPAPHVNPAFFPPPGGPNNMGGPPGGDGR
GPNGPNDPYGRPPPYDRGDFGPPGSNQRPPLICEFDLRAPLPRGCPDPWINEGLVDLKNG
GQHLHNASDPGEMESARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAADYGSAIETLV
TAISLIKQSKVSADDRCKVLISSLQDCLHGIENKSYGSASSSAPKRRERSRERDHSRSRE
KSRRHKSRSRDRHEDYYRERSRERERHRGDRERERERDREREYRHR
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggagttgatcacatcgacatctacgccgatgttgaagaggatttcaaccag
gaatcagactaccctgcccatgaccagatagacttgtatgacgatgttatctctccttcg
gccaataataacggagacgcacctgaggaccgggactacctggacaacctacccccacct
gctggctccgaggggaacaagagcaccccgcccaacgtggtttacacgtacactggcaag
aggatcgccctgtacataggcaatctcacatggtggacaacagacgaagatttgacagac
gccattggatcaataggcattaaggatctgctggagatcaagttctttgagaacagagcc
aacggccagagtaaagggtttgccctggtgtgtgtgggctcagacacgtcctctaggaag
ctactggacctgctggctaaacgggagctccacggacagaaccccattgttaccccctgc
aacaaacagtccctcagccagttcgagatgcagtctcggaaaagcccaggtacatcgggt
gggcagatgtccggagatgggaaggcgggaccccccaccatgggcccccgcggtggcttc
cccatgggcatgggtaggggccgaggccgcttccctgggcctcctggccctggaggagac
cgcttccctgggcctatcggacccggagggcccccgccacacttcccagggtcggggatg
aggccacctgaactcattaaccatagacaccaagaaggccacctgatggatatgaatttc
aattgcttcccgccgggacgtgatgggaattggcgacccagaggtggtatgcagggccca
cctcgaccccctcctggcccactaggtccccctggacccctaggcccccctcccccagga
cagggcctcccccctcccatgcaaggcccccccaaccgtggcgaccgccccccacccccg
gtcatgttccccggccagttcggccagccccccatgggtcctctcccccctggccctccc
ccacacggcttcggccctcctcctggccccccacccccccaacagggccctccacccccg
ggtcatttcccccctcgcccccccgggccccttggaccacctctggccctcgctccccca
ccacacatgaccgggccccgacctggaggccccccaccggctccccatgtcaacccagcg
ttcttccctcctcctgggggtcctaacaacatggggggccctcctggaggagacggcagg
ggccccaacgggcccaacgacccctatggacggccacctccgtatgaccggggagacttc
ggcccccccggcagtaaccagcgtcccccgctaatctgtgagtttgacctcagggccccc
ctgccccgcggctgcccagacccctggattaacgagggtttggtcgatctgaaaaatggc
ggccagcacttgcacaatgcgagtgacccaggggagatggagtcggcgcggacaccgctg
agcgaggcagagtttgaggagatcatgaaccggaaccgagccatctccagtagtgccatc
tctagggcggtgtcagatgctagcgctgctgactatggcagtgccatagagactctggtg
acagccatctctctgatcaagcagtccaaggtctctgctgacgaccgctgtaaagttctc
atcagctctctacaggactgtctccacggcatcgagaacaagtcctacggctctgcctcc
agttctgcccccaaaagacgcgagaggtcgagggagcgtgaccacagccgatcccgggag
aagagccggcgccacaagtcccgtagccgcgaccgccacgaggactactaccgcgaacgc
agccgggagagagagaggcaccgcggggacagagaacgagaacgagaaagagaccgtgag
agggagtaccgacatcgttag
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