Oncorhynchus mykiss (rainbow trout): 110501062
Help
Entry
110501062 CDS
T07259
Name
(RefSeq) laminin subunit beta-1 isoform X1
KO
K05636
laminin, beta 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04510
Focal adhesion
omy04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110501062
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110501062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
OVT1
Motif
Other DBs
NCBI-GeneID:
110501062
NCBI-ProteinID:
XP_036813552
Ensembl:
ENSOMYG00000011234
LinkDB
All DBs
Position
21:complement(31952607..31982502)
Genome browser
AA seq
1791 aa
AA seq
DB search
MLILHIASLLRPWGHLMRNISLGWRSFAQLPEFGDVCTEGSCYPATGDLLIGRAHKLTAS
STCGIEKPERFCIVGHLEEEKKCFVCDSREKYDERMNHTTSHSIENLVTTFAPNRLKTWW
QSENGVENVTIQLNLEAEFHFTHLIMTFKTFRPATMVIERSMDFGEKWQVYRYYSYNCES
AFPGISVGPMVKVDDIICDSRYSDIEPSAEGEVIFRVLDPAFEIEDPYSPRIQNMLKITN
LRVQFTKLHTLGDNLLDSRDEVTEKYYYALFDMVVRGNCFCYGHASKCAPVDGIHVGTEG
MVHGHCMCNHNTEGLNCEHCKDFYNDLPWRPAEGRNTNACKMCECNHHSRSCHFDMAVYL
STGNVSGGVCDECQHDTMGRQCEQCRPFYYQHPERHLRDPNICEPCSCDPTGSLQGGVCD
GRTDVSAGLIAGQCRCKTSVEGERCDHCRQGHYGLGQGPNGCLQCTCNPLGTLPGGSPCD
MDTGNCFCKRLVTGRNCDRCLPQHWGLSNDMDGCRPCDCDQGGAVNNDCSPISGQCQCRE
HMYGRRCDQVESGYYFIALDHYTYEAEEAKHGPGVTVVPRPYPLNRSPTWTGAGFVKVPE
GAHLEFHINNLPDSMDYDMLIRYEPQLPDQWEQVEIRVIRPYSMRVGQPASPCENTLQGG
DQQLVSLLPGSRHVLLPRPVCLEKGRNYTVRLSLPLYSSLSDVQSPYTLIDSLVLIPRVR
ELLLFEGSQGEGAWDTFQRYRCLESSQSVIKSPMTDICNNYIFSVSALLHQGAMACQCDS
QGSLSAVCDPSGGQCQCRPNVAGRNCDRCAPATFLFSPLGCRSCECSPMGSVNAFCHEAT
GQCECVPGASGRQCAHCLPGYWGFPQCQPCQCNGNSDYCHPQTGECQGCRAFTTGHMCER
CLDGYHGDPVLGLGGHCRPCMCPDGPGSGRQYADSCYQTADNYQLVCACSPGYRGARCDE
CAPGHYGNPQVPSGRCLPCQCNDNIDQLDPGSCDARTGVCLKCLHHTEGYGCQRCKLGYY
GNAASQSCRRCMCYSVGTMSEACLSPGECHCDLQTGQCPCRPNVIGQNCDRCALDTFNIG
SGKGCQTCDCDPTHSFGTSCNELSGQCSCRSGFGGRKCNECRDKFWGDPEVKCQACDCDL
RGIASEQCHRSSGQCVCVEGVSGPRCNQCARGYHGTFPACERCHQCFAEWDRVVGELSNQ
TQRLKDHVTELQTSGVTAPYKDTVSSLEISANAISAIVENNPAIQKMEDVQQMMQQATEL
VADLNERLNVSEDSLSRLVVNANDTEASLDALRKQAQELERTVTDIRDHIKTVKNSNIEG
AMDTITKAHLESKRAEIRANQTTSYPDNTLEQSATLRREAEARLSQNQAEFDLRQQKHTE
RLERLATELNTLDLSELSKKTCGAAGGEEGCAASPCGGVGCVSEDGNLRCGGEGCEGLVT
QTQSTLKTAKDYDQEILSTLQEVDKLSRMVWEVKVRADEAKLNAQEVLLKSNQSRDRVEH
TNEQLRSLIKEIRGLLTNDRAKVEVIEAVSNEVLALEMPTSPEQLEALTKEIRDRVGTLT
SVEDILSQSANDIHTAERLLEQARTASQEVSEMKETAALVKEALETTERAQNAAIDAVKQ
AHNNTRGTLDLITSVESETAESELRLSNATLRLLQLERDVTMLRESSLGTRHHTQHTERL
SETARQDAEQALQEFDLEVKGKYSVVEGLVVTKAEGVSDARKRAELLQQEAKELLTQSSV
KLQRFRELERSYAANQRTLEAKTVQLAGLEKTARQLLNDISQKVMVYSTCS
NT seq
5376 nt
NT seq
+upstream
nt +downstream
nt
atgttgatattgcacatcgcatcacttttgagaccatggggacatttaatgaggaacatc
tccctcgggtggcgctcctttgcccagctgccggagtttggggatgtgtgcactgagggg
agctgctaccccgccaccggggaccttctgatcggccgtgcgcacaagctcaccgcctcc
tccacctgcggcattgagaagcctgagcgcttttgcatcgttggtcacttggaggaggag
aagaagtgttttgtgtgtgactcaagggagaagtatgatgagaggatgaaccacaccacc
agccacagcatcgaaaacttggtcaccaccttcgcccccaaccgcctcaagacctggtgg
cagtctgagaatggggtggagaatgtgaccattcaactgaacctggaagctgagttccac
ttcacacatctcatcatgacttttaagacgttccgtccggctaccatggtgatcgagcgt
tccatggattttggggagaagtggcaggtgtaccgttactatagctataactgtgagtcc
gccttccctgggatatccgttggacccatggtcaaagtggacgacatcatctgtgactct
cgctactctgacatagagccgtctgcagagggagaggtgatattcagggtgctggacccg
gcgtttgagattgaagacccttacagtcccaggatacagaacatgctgaagatcactaac
ctgcgtgtccagttcactaagctccacacactgggtgacaacctgctggactccagagac
gaggtcacagagaaatactactatgccctcttcgacatggtcgtccgcggcaactgcttc
tgctacggacatgcctccaaatgcgcccctgtcgatgggatacacgttggcacagagggc
atggtccatggtcactgtatgtgtaaccacaacacagagggtctgaactgtgagcactgt
aaggacttctacaacgacctgccctggaggcctgcagagggacgcaacaccaatgcctgc
aagatgtgcgagtgtaaccaccactccaggtcatgtcactttgacatggctgtgtatctg
tctacggggaacgtgagtggaggagtgtgtgatgagtgtcaacatgacaccatggggcgt
cagtgtgagcagtgcagacccttctactaccagcaccccgaaagacacctgagagacccc
aacatctgtgaaccgtgtagctgtgacccgacgggctccctgcagggtggtgtttgtgac
ggcaggacagacgtgtctgctggtctgatagcagggcagtgtcgctgtaagaccagtgtg
gagggagagcgctgcgaccactgtagacagggacactacggcctgggacagggaccaaat
ggctgcctgcagtgtacctgtaatcccctgggcacactgccgggaggaagcccatgtgac
atggacacaggaaactgcttctgcaaacgccttgtcaccggcaggaactgtgaccggtgt
ctgccgcaacactggggcctgagtaatgacatggacggctgcagaccatgtgactgcgac
cagggcggagccgtcaacaatgattgttctccgatatcaggccagtgtcagtgtcgagaa
cacatgtatgggaggcgttgtgaccaggtggagtcaggatactacttcatcgccttggac
cactacacctatgaggctgaggaagccaagcacggccctggtgtgacggtggttcccagg
ccctatcctctgaaccgtagtcctacctggacaggggcagggtttgtcaaggtacctgag
ggagctcacctggagttccacatcaacaacttacctgactccatggactacgacatgctg
attcgctacgaaccacagttgccggatcagtgggagcaggtggagatcagagtgatacgt
ccgtactcaatgagagtggggcagccagccagtccatgtgaaaacacgcttcaaggagga
gatcagcagttggtgtctcttcttccaggatccagacatgtgctgctcccgaggcctgtg
tgtctggagaaggggcggaactacactgtgcgtctcagtctgcctctttactcctctctc
agtgatgtccaaagcccctacacgctcatcgactccttggtgttgattccgcgggtgcgt
gagctgctgttgtttgagggttctcagggtgagggggcgtgggatacgttccagaggtac
cgctgtctggagagcagccaaagcgtcatcaagagccccatgacggacatctgcaacaac
tacatcttcagtgtgtctgccctgctacatcagggggctatggcgtgccagtgtgactcc
cagggctctcttagtgcagtatgcgaccccagcggcgggcagtgccagtgtcggcccaat
gtggcaggcaggaactgtgaccgctgtgcccccgccaccttcctgttcagccccttagga
tgcagaagctgtgagtgtagtcctatgggctctgtgaacgctttctgccacgaggccaca
ggtcagtgcgagtgtgttccaggggcgtcagggcgtcagtgtgcccactgcctgccaggc
tattggggcttccctcaatgccagccctgtcagtgtaacggcaacagcgactactgccac
cctcagactggggagtgccagggctgccgcgccttcaccaccgggcacatgtgtgaaagg
tgtctggatggttaccatggcgacccagtgttgggtttggggggtcactgccgcccctgc
atgtgtcccgacgggccggggagcgggcgccagtacgcagacagctgctaccagaccgcc
gacaactaccagctggtctgtgcctgcagccctggatacagaggagccaggtgtgacgag
tgtgccccaggtcactatggtaacccccaggtgcccagcgggcgctgtctgccctgccag
tgtaacgacaacatcgaccagctggacccggggtcctgcgacgctcgcacaggcgtctgc
ctcaaatgcctgcaccataccgagggctatggctgccagcgctgcaagctgggttactac
ggcaacgccgccagccagagctgcaggaggtgtatgtgttattcagtgggcacaatgtcg
gaggcgtgtctgtctccgggggagtgtcactgtgacctgcagactggccagtgtccctgc
cggcctaacgtgattggccagaactgcgaccgctgtgcccttgatacgttcaacattgga
agcggaaagggctgccagacctgtgactgtgacccaacccactcctttgggacgtcgtgc
aatgagctgtcagggcagtgctcgtgcaggtcaggtttcgggggaagaaaatgcaacgag
tgccgagataagttctggggagaccctgaggtcaaatgtcaagcgtgtgactgtgacctg
cgtggcatcgccagcgagcagtgccaccgttcgtccggccagtgtgtgtgtgtggagggt
gtgtctgggcccaggtgtaaccagtgtgccagagggtaccatgggacgttccccgcctgc
gaacgatgccaccagtgctttgccgagtgggaccgcgtggtaggggaactgtccaatcag
actcagcgtttgaaggatcatgtgacagagctccagaccagtggggtgacggcgccgtac
aaagacactgttagcagtctggagattagtgctaatgctatcagtgcgatagtagagaac
aaccccgctatacagaagatggaagatgtacaacagatgatgcagcaggccactgagctg
gtggcagacctgaacgagaggctgaacgtctcagaggattccctgtcccgtctcgttgtc
aatgccaacgacaccgaggccagtctggacgcactgagaaagcaggcccaagagctagag
agaacagtcacagacattcgagaccacataaagactgtgaagaactctaacatagaggga
gcgatggacaccatcaccaaggcccacttggaatctaagagggcggagatccgtgccaat
cagaccaccagttaccccgacaacactttggaacagtcggctacactacggcgtgaagcg
gaggccagactgagccagaaccaggcggagtttgacctgagacaacagaaacacacagag
agactggagaggctcgccacagagctcaacactcttgacctatcagagctcagtaagaag
acatgtggagcagctgggggggaggaggggtgtgctgcgtccccctgtggaggggtgggg
tgtgtgtcggaggacggcaaccttcgctgtggtggggaggggtgtgagggtttggtcaca
cagacacaaagcactctgaaaacagccaaggactacgaccaggaaatactctccaccctg
caggaagtggacaagctctctaggatggtgtgggaggtgaaggtgcgtgcggacgaggcc
aagctgaatgctcaagaggtgctgctgaagtccaaccagagcagagatagagtggagcac
accaacgagcagctccgaagcctcatcaaggagatacgaggcctactcactaatgaccgt
gccaaagtggaggttattgaagcggtttcaaatgaggtgttggccctggagatgcccaca
tcgcccgagcagctggaggccctgaccaaggagatcagagacagggtgggaaccctcacc
agcgtggaggacatcctcagtcagagtgccaacgacatacacactgcagagaggctgctg
gagcaggcccgcaccgccagtcaggaggtgtctgagatgaaggagacagctgccctggtg
aaggaagctctggaaacgactgagcgtgctcagaatgctgccatcgatgccgtcaaacag
gcccacaacaacaccaggggaacacttgacctcatcacatctgtggagtcggagacagcg
gagtcagagctgcgtctgagtaacgccacactgcgtctgctgcagctggagagagacgtg
actatgctgagagagagcagcctgggcacccgccaccacacacagcacactgagagactg
tctgagaccgctaggcaggacgcagagcaggccctgcaggagtttgacttggaggtgaag
ggtaaatacagtgttgtggagggcttggtggtgacgaaggcagagggcgtttctgacgcc
aggaagagggcggagctactgcagcaggaggccaaggagttgctcacccagtccagtgta
aaactacagagattcagagagttggagaggtcgtatgcggccaaccagcgtactctggag
gccaagacagttcagctggccgggctggagaaaacggcacgccagctgctcaatgacatc
agccagaaagtaatggtctacagcacctgttcttag
DBGET
integrated database retrieval system
