Oncorhynchus mykiss (rainbow trout): 110501241
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Entry
110501241 CDS
T07259
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
110501241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omy04121
]
110501241
Ubiquitin system [BR:
omy04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
110501241
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
LIM
PDZ_6
PDZ
PDZ_2
Motif
Other DBs
NCBI-GeneID:
110501241
NCBI-ProteinID:
XP_036815510
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Position
22:complement(715056..853258)
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AA seq
1239 aa
AA seq
DB search
MAADSNKDSLHYRRSLVIEPKTTTQFNQFLPTKDKPAAYVPAPLRKKRAERHEDSRRSWA
SPMYTEEDGTFTRLLQKRAVANDGSKSMTDLAVDQAALKQVCYEELQKIREQVKENEDQW
QDDLTKWKNRRKSVNSDIVKKKEEREQIEQTTESSGGGSGGFLRSNRSSIGSRLNSLAAL
DQDVFEDSAPVRQTRTLPPRSYTIDNPYTPVERPSPTPPSVPHPREENPAPTTATDRAYS
PSRGDMSNSSDRPSGSGSDITNNTTTIGRTSNYNRYVPTPSERAPTPSERAPTPSERAPT
PSERGPTPSERAPSPALRYTSAAKMEETSSTTTTPSFLPKLPEPRRPWSGKVAEEVTTST
DGGSLYKLQPLYNSVAMEQKPVPPSVSRVSASLPRSYMKSDSARLTSGITPRPFGSQSTC
VASLPRAYTKSVNGEMDVTKKSSAPSRYSQVMTSEDEARSHSNSANSSGGEEEEEEEEEK
RESVRGVNPTLVPTLAPSPVPPQARSPFTALQPPKVASSAPVSPVPAKDTNQESYADMRI
SLNQKPNSSRDFGFQTEWDSTGAHVTSIQSGSPAELCQLQVGDEVLAVSGHRVAEMSYGE
WKSSTEQALQQGSLTMDIRRHGRNNWDRDLPSLPCKSHKTINLTSMNHHPTFIGSPNTAT
VNSTSSLAFTSQGSIETTKEIGIQQIIDVASIGMNGGSRDKTVTMKNKESVEPISLKNLK
RRSEFFEQGGSDSAISDMPVPSIAPSNHWSWDLEEERRRQEKWQKEQERLLQEKYSRDQE
KLEEEWRRAQQDAVTDGGRHHQEEPSSKSLSLPCPLRQPILPWEDQEEERRRRREEEEAQ
QRQEERMRTEERDLLRLQKERKREEQKEEERRQRKEEELKWQRRKEEEREEERRHQEAAN
QQHMENTRMQEQQQWVGDSCGYAKVQPEISMADRAKSKSTPELDVEKPDTTSWYGRSGGM
AQKLLEEELRRKADKKAQSLQAASELELERRNILNAMRYREPERVTSSGGLDEASWRNGQ
QSQSQAELERQQILQEMKKKTQLTTDNSWIRQRTTTSKDPTASLISRGESLDNLDTAPRS
SWRSSWSTSSIGGGGGGNSSSGVSGRPGSATLPSSLSMSSLRGPGGSNPSSWSQCSPSPS
PSPTPPSGLEIESRPSSQQRSRSVSGKKVCTFCDTVLGKGAAMIIESLGLCYHLTCFKCI
DCKSDLGGSEAGAEVRIRSRQLYCNSCYVRFKTGQPTSM
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagacagtaacaaggattcactgcactaccgccgctcgctggtcatcgagcct
aaaacgaccacgcagttcaaccagttcctgcccaccaaggacaagccagcggcctatgtg
ccagcgccgctccgcaagaagcgggccgagcgccacgaggacagccgtcggagctgggcc
agccccatgtacacggaggaagatggcaccttcaccagactgctccaaaagcgcgccgtt
gctaacgacgggagcaaatcaatgacagaccttgcagtggaccaggcagcactgaagcag
gtatgctacgaggaactacagaagatcagagagcaagtcaaggagaacgaggaccaatgg
caggatgacctcaccaagtggaagaaccgtcgcaagagcgtcaactctgatattgtgaag
aagaaagaggagagggagcagattgagcagaccacagagagcagcggaggagggagcggt
ggtttcctgaggtccaaccggagctccatcggcagtcgtctcaactccctcgccgccctg
gaccaggacgtgtttgaagactccgctccggtccgccaaacccgtaccctcccccccagg
agctacaccatcgacaatccatacacccccgttgagcgtcccagtcccacacccccctcc
gtgccccacccgagagaggagaaccccgcccccaccacggcaaccgacagggcctactca
ccctccaggggtgacatgagcaacagtagtgaccgtccctccggttcaggtagcgacatc
acaaacaacactaccaccatcggtcgtacctccaactacaaccgctacgttccgacaccc
tcggagagagccccgaccccctcggagagagccccgaccccctcggagagagccccgacc
ccctcggagagaggcccgaccccctcggagagagccccaagcccggccttgcggtacacc
agcgcagccaagatggaggagacctccagcaccaccaccacccccagcttcctcccaaaa
ctacccgagcccaggcgcccgtggtcaggcaaggtggctgaagaagtgaccacttccact
gatggtggttctctgtacaaactacagccactgtacaactcggtggcaatggagcaaaag
cctgtgcctcccagtgtgtctcgggtttctgcctctctccccaggagctacatgaaatcg
gatagtgctcgcctcacctctggcatcacgccacggcccttcgggagccagtccacctgc
gtcgcatcgctgccacgcgcctacaccaaaagtgtgaacggcgagatggatgtcaccaag
aagtcgtcggcccccagccgctatagccaggtcatgacctccgaggacgaggcacgttcc
cactccaactctgccaacagcagtggaggagaggaagaggaggaggaggaagaagaaaag
agagagtcggtaaggggagtgaaccccacactggtccctaccctggccccctctcctgtc
cctcctcaggccaggagtcctttcactgcactccagcccccgaaagtggcctcctcagcc
ccggtcagtcctgtacctgcaaaggacacaaaccaggagagctacgcagacatgcggatc
agtctcaaccagaagcccaacagcagtcgagactttggcttccagactgagtgggactcc
actggagcacacgtcacctccatccaatcaggcagcccagcggagctgtgccaactgcag
gtgggagacgaggtgctggcggtgagcgggcacagggtggcagagatgagctacggcgag
tggaagagcagcacagagcaggccctgcagcagggcagcctcaccatggacatacgtcgc
cacggcaggaacaactgggacagagacctaccttccctgccgtgcaaaagccataagacc
atcaatctgaccagtatgaatcatcatccaacatttataggttcccccaacacagccact
gttaactcaacctccagcttggctttcacatctcagggatccatagaaaccaccaaggaa
atcggcatccaacaaatcattgatgtggcatccattggaatgaatggaggttcccgtgac
aagacggtgaccatgaaaaacaaagagtctgtagaacccatatctttgaaaaacttaaaa
cggaggtcagagttttttgaacaaggaggatcagattctgcgatatcagatatgcccgtt
ccctccatcgctccctctaaccactggtcctgggacctggaggaggagcgccggaggcag
gagaagtggcagaaagagcaggagcgacttctacaggaaaaatacagtcgtgaccaggag
aaactggaggaggagtggcgtcgagcccagcaggatgctgtgactgacgggggcagacac
caccaagaagagccgagcagcaagagtctcagcctaccctgccctctccgccagcccatc
ctgccctgggaggaccaggaggaagagaggaggaggaggagggaagaggaggaggcacag
caaagacaggaggagaggatgagaacggaggagcgagatctgctgcgtcttcagaaggag
aggaagagggaggagcaaaaggaggaggagaggagacagaggaaagaggaggagctgaaa
tggcaaaggaggaaggaggaagagagggaggaggagaggaggcaccaggaggctgctaat
caacaacacatggagaataccagaatgcaggaacagcagcaatgggtgggggactcctgt
ggctatgccaaggtccagcctgagatatcaatggcagacagggcaaagtccaaatctact
ccagagctagacgtggagaaaccagacactacaagctggtatggccgctcggggggcatg
gcccagaagttactggaggaggagttgagacgtaaagcagacaaaaaggcccagagtctc
caggccgcgtccgaactggagttggagaggagaaacatcctgaatgccatgcgatacaga
gagccagaaagagtgactagcagcggtgggctggacgaggcatcgtggaggaatggccag
cagagccagtcccaggcagagctagagaggcagcagatcctgcaggagatgaagaagaaa
acccaactgaccacagacaacagctggatccgccagcgcactaccaccagcaaggacccc
actgccagcctcatcagcagaggtgagtctctggacaacctggacactgcgccccgctct
tcttggcgctcatcgtggtcaacctcgtccatcggtggtggcggtggtggcaacagcagc
agcggggtcagtggtcgtcccggctcagccaccctgccctcctccctctccatgagctcc
ctcagagggcccggggggagcaacccgtcttcctggtcccaatgctcaccatcgccatct
ccctcccccactcctccttctggcctcgaaatcgagtcacgcccatcctcgcagcaacgc
agcaggtcagtgagtggcaagaaagtctgtacgttctgtgacacggtcctgggcaaggga
gccgccatgatcatcgagtccctgggactctgttatcatttgacctgtttcaagtgcatt
gactgcaagtccgacctgggaggatcggaggccggagctgaggtcagaatacggagccga
cagctctactgtaactcctgctacgtgcgattcaaaactggacagccaacctccatgtga
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integrated database retrieval system
