Oncorhynchus mykiss (rainbow trout): 110501302
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Entry
110501302 CDS
T07259
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110501302
Transcription factors [BR:
omy03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
110501302
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
110501302
NCBI-ProteinID:
XP_021434451
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All DBs
Position
22:complement(7719470..7736799)
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AA seq
298 aa
AA seq
DB search
MYSMMMETDLQSPGPQTNTHLGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGAGGGGMGLGVGMGSSGVGQRLESTGGHGGSASSGYAHMNGWANGAYSGQM
AAAAAAAAMMQEAQLAYSQHPGSGHHHHSHHHHHPHNPQPMHRYDMSALQYSPISNSEGY
MSASPSGYGGITYTQHQSSGVSSSAAMGTLGSLVKSEPSGVQYDDCHGGLSMDHRGDL
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacctccagtcccctggaccccaaacgaacacacat
ttggggcaaacggggccgaacagtgggtccaaagcgaatcaggaccgggtgaagcgtccg
atgaacgcgttcatggtgtggtcccgcgggcagcggagaaagatggcccaggaaaacccc
aagatgcacaactctgagatcagcaagcggctgggagccgagtggaaggtcatgtccgag
gcggagaagagacccttcatcgacgaagcgaagcggttacgagcaatgcacatgaaggaa
cacccggattacaagtacagaccgagacggaagaccaagacgctgctgaaaaaggacaaa
tactctctggccggtggcctgctctctggggccggcggcggtggaatgggtctgggtgtc
gggatgggttcatccggtgtcggccagaggttagagagcaccgggggccacgggggctcc
gccagctcaggctacgctcacatgaatggctgggcgaacggtgcgtactcggggcagatg
gctgcagctgctgcggcggcggcgatgatgcaagaggcgcagctagcttacagccagcac
ccgggcagcgggcatcaccaccactcacaccaccaccatcacccgcacaacccccagccc
atgcaccgctacgacatgtcggcactccagtacagccccatctcgaactctgagggctac
atgagcgcatctccgtccggctatggcgggatcacctacacgcagcaccagagctctggc
gtctcctcctcggctgccatgggcacgttagggtcgctggtgaagtcagagccgagcggt
gtccagtatgatgactgccatggtggactgtccatggatcaccggggagacctgtga
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