KEGG   Oncorhynchus mykiss (rainbow trout): 110501334
Entry
110501334         CDS       T07259                                 
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
  KO
K19036  ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3]
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:omy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:omy03009]
    110501334 (ighmbp2)
   03012 Translation factors [BR:omy03012]
    110501334 (ighmbp2)
Enzymes [BR:omy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     110501334 (ighmbp2)
    5.6.2.5  RNA 5'-3' helicase
     110501334 (ighmbp2)
Ribosome biogenesis [BR:omy03009]
 Eukaryotic type
  Other ribosome biogenesis factors
   110501334 (ighmbp2)
Translation factors [BR:omy03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    110501334 (ighmbp2)
SSDB
Motif
Pfam: AAA_11 AAA_12 SMUBP-2_HCS1_1B R3H AAA_19 AAA_30 zf-AN1 Viral_helicase1 DEAD UvrD-helicase nSTAND3 AAA_22 ResIII AAA_16 SLFN-g3_helicase Helicase_RecD PIF1 IstB_IS21 AAA_25 T2SSE MeaB HEM4 AAA AAA_31 ABC_tran PhoH NPHP3_N DnaB_C AAA_18 ATPase UvrD_C_2 ATPase_2 Flavi_DEAD NTPase_1 SRP54 Herpes_ori_bp
Other DBs
NCBI-GeneID: 110501334
NCBI-ProteinID: XP_021434502
Ensembl: ENSOMYG00000028240
UniProt: A0A8C7W2F3
LinkDB
Position
2:complement(103283193..103317354)
AA seq 1006 aa
MEVECFVSKTLELLQEEREAEIEETKLWQENVSLKDLQSKGVCLLKLQIGSQSTGLYGRS
LLLLEPRKHMGVSVLPSNNFGPGDIVGLYDLDGCKPSSQLCTGVVTRISQSAVTVACEDS
PDGLNLDTDALYNLMKLANDVTYKRMKKALNTLNGYSSGPASDLISVLFGYSEPGSISQP
NDLSFLNSGLDESQRQAVSFALSQREVAVIHGPPGTGKTTTVVEIILQVVKRGQKVLCCA
GSNVAVDNLVERLAKAKAKVLRLGHPARLLESIQKHSLDAVLAHSDNTNIIADIRKDIDK
AFMGMKKMNDKRDRIHLKREVGELRKELRTREATAIAEVLKRADVVLATNTGANDGGPLK
NLPVDHFDWVVIDECAQALESSCWIALLRGRKCILAGDYKQLPPTIKSHTAASKGLSVSL
MERLILKYGDSVVRMLTVQYRMNSNIMTWASEQMYQGQLVAHSSVEKHLLKDLPGVASVE
ETSTPLLLIDTAGCGLSEMEVADEQSKGNQGEVDIVELHIKALTEAGVKPKDIAVIAPYN
LQVDLLRQRLSARHPDLEIKSVDGFQGREKEAVVLTLVRSNRKGEIGFLAEDRRINVAVT
RARRHLALVCDTQTVQTHGFLKTLIDHMTQHGDVRTAFEYLQDIVPQNYTRDHRDTKSNN
TKATASNSASNKQKGRGQAGSKVEPGHKRTSGGNKTQGGEPQTGSDPGTHSQARRSTPTE
EEQRLTQIKYLEIKNQVEWFLQDPDQTELRFPSTLNSHDRLLVHQVAEELGLNHESQGEG
KDRCITVSRPPTGSNEAGEEEEQQAQEPSAVREEESVTGPPVGQPAADLKTLHLERMRRE
QKKREQKMEQEKHLDTIRTAGQTQTAKKTKAKGKTKKTKAGACEIAAAATAADDFDTLID
AVVKAERVCSFVKCKTLVIHLGQLCLFCNRQYCLGHHIPEVHGCGDQARANARMRISKEG
VLYAGSGHKDKSVDPNKKAYLHRKLDSKLKDMEKQRKTKPKESDNN
NT seq 3021 nt   +upstreamnt  +downstreamnt
atggaggtggaatgctttgtgtccaagaccctagagctccttcaggaggagagagaagca
gagatcgaggagaccaagctatggcaggagaatgtctctctgaaagatctccagagtaaa
ggcgtttgtctcctgaagctgcagataggaagccagtcaactggcctttatggacgatca
ctcctccttctggaacccagaaagcacatgggtgtctctgtgctgcctagcaacaacttt
ggtcccggagacatagtgggtctgtatgacctggatggctgtaagccgtcctcccagctg
tgcactggtgtcgtgacccgcatcagtcagtcagctgtcaccgtggcctgtgaggactcg
ccggacggactcaacctggacacagacgctctgtacaacctcatgaagctggctaacgat
gtcacgtacaaacgcatgaaaaaggccttgaacactctgaatgggtacagcagtggacca
gcctcggatttgatcagcgttctctttggctattcagaacctggctcgatatcacaacca
aatgatctgtctttcctgaacagtggtctggatgagtctcagagacaggcggtgtccttt
gctctgtctcagagagaggtagctgtaatacacgggccaccaggcaccggcaagacaacc
actgtggtggaaatcatcctacaagtggtcaaacggggacagaaggtcctgtgctgtgct
ggttctaacgtggccgtggataacctggttgagcgcctggctaaggccaaagctaaggtc
ctgagactgggccaccctgcccgcctgctagagtccattcagaaacactcgctagacgcc
gtcctcgctcacagtgacaacaccaacatcatcgccgacatacgcaaagacatcgacaaa
gcttttatggggatgaagaagatgaatgacaaacgagatcggatccacctgaagagggag
gtaggagagctgaggaaagagctgaggaccagggaagctacagccattgctgaggtcctc
aaacgtgctgatgttgttctagccactaacacaggtgctaatgatggtggccctctgaag
aacctacctgtagaccattttgactgggtggtgatcgatgagtgtgcccaggcgttggag
agctcctgctggatcgctctgctccgaggcaggaagtgtatcctggctggagattacaag
cagctgccacccaccatcaagtctcacacggctgcatctaaaggcctgtctgtcagcctg
atggagaggttgatcctgaagtatggcgactccgtagtcaggatgctgacagtgcagtac
cgtatgaacagtaacatcatgacctgggcctcagaacagatgtaccagggtcaactcgtc
gcacacagctcagtggagaaacacctgctcaaagatctcccaggagtagccagtgttgaa
gagaccagcacccctctcctcctcatagacacagcaggctgtggacttagtgagatggag
gtggcagacgaacagtccaaaggaaaccaaggtgaggtggacattgtggaactgcacatc
aaagcgttgactgaagctggggtgaaacctaaagacatcgctgttattgccccttacaat
ctgcaggtggatctcctgcgtcagcgtctctcagcgagacatcctgatctggagatcaag
tctgtagacggcttccagggtagagagaaggaggctgtggtgctgaccttggtcagatct
aacaggaaaggtgagatagggttcttagctgaagaccggaggatcaacgtggcggtgact
cgagccagacgtcacctggccctggtgtgtgacacgcagaccgtccagacccacggcttc
ctcaagaccctcatcgatcacatgacccagcacggcgacgtacgcaccgcctttgagtac
ctgcaggacattgtgccccagaactacaccagagaccaccgagataccaagtctaacaac
actaaagctaccgctagcaactccgcctccaacaagcagaagggcagaggccaggctggg
agcaaggtggagccaggacacaagaggacctctgggggtaacaagacccagggaggagag
ccccagacaggttcagatcccggcacacacagccaagccagacgttccacccccacagag
gaggagcagagactgacacagataaaatacctggagatcaagaaccaggtggagtggttt
ctccaggacccagaccagacggagctacggtttccctcgaccctcaactcccacgaccgc
ctgctcgtacaccaggttgcagaggagctgggcctgaaccatgagagccagggagaggga
aaggatagatgcatcactgtctccagacccccaacagggtctaacgaggctggggaagaa
gaggagcaacaagcccaagaaccatcagccgtccgggaggaagagagtgttacagggcct
cctgtagggcaaccggcagcagatctcaagactttacatctggaacgaatgagacgggag
cagaagaagagggagcagaagatggagcaggagaagcatctagataccatccgtacagca
ggacagactcagactgctaagaagaccaaggcaaaaggaaagaccaaaaagaccaaagcg
ggggcctgtgagatcgctgcggctgcgacggcggctgatgattttgacaccctaatagat
gctgtggtgaaggcagaacgcgtctgtagttttgtcaagtgtaaaacgttggtaattcat
ctgggacaactctgtctgttctgcaacagacaatactgcctcggtcaccacatacctgag
gtccatgggtgtggagaccaagccagggccaatgccaggatgaggatcagtaaagaaggg
gttctgtatgctggtagtggacacaaggacaagtctgtagatcctaacaagaaggcctat
ctacacaggaagctggactccaaactcaaagacatggaaaagcaacggaagaccaaaccc
aaagagagtgacaataattga

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