Oncorhynchus mykiss (rainbow trout): 110501335
Help
Entry
110501335 CDS
T07259
Name
(RefSeq) POU domain, class 2, transcription factor 1 isoform X1
KO
K09364
POU domain transcription factor, class 2
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
110501335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110501335
03021 Transcription machinery [BR:
omy03021
]
110501335
Transcription factors [BR:
omy03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
110501335
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
110501335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POU2F1_C
Pou
Homeodomain
DUF3839
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
110501335
NCBI-ProteinID:
XP_036814522
Ensembl:
ENSOMYG00000044993
LinkDB
All DBs
Position
22:complement(8827735..8851748)
Genome browser
AA seq
763 aa
AA seq
DB search
MADGGAASQDESSGPDSRMSNPSETSKCAMESQSGDGNTGVQTNGLDFQRQTVQATNAIT
NAHAQALLQQSKSEDSGAIPTSVQQGVLPQAQLMLAGGQIAGLTLSPAQQQMLLQQAQAQ
LLAAAMQQQSASQQSSTTGASISASAATPITQLPLSQPVQITSIPSVSTHLPGQLSQLGY
PYEMATFSSYLPQLQQLQQQNLTMPQFVLVQPGHHIATQLQPGQFIISQTPQGQQSMYTT
QSFLQAHNLLTQLPQSQANLLQTQPSINLASQPATPSHTIAATPIQPLSHSQTPPKRLDT
PSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSF
KNMCKLKPLLEKWLNDAVCAENLSSDLALSSPCGLGSPGLGMEGLNRRRKKRTSIETNIR
VALEKSFLEQNQKPTSEEITIIADQLNMEKEVIRVWFCNRRQKEKRINPPSSGHSITGTG
STPIKTIFTPNSPLVASTASLVTSNTPTTLTLNPVMPLTSTSVSGLTLTGTTIGATTNTA
SVISTAPMVTAVTSSTSLSPSPTALQATAAETDGTQEHTVVMQAPSSLATNLGTGQVMVA
GPGLSAALQGAAQLPTSSSYASMAGLNPGLMASSQFTPGGALLSLAPGGLGGAINPAMLS
NSTLATIQGLWSALASGGTLPITSLDGSGNLLFANTSSGSTPNLVQPLFLNPQNLSLLTS
NPVSLVSAGAAGGGALQVTANHQVTTATVPVPASTITTASKAQ
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggaggagcagcgagtcaagatgagagttcaggaccagattctaggatgagt
aatccatcagaaactagtaaatgtgcaatggagagtcagagtggggacggaaacacagga
gtccaaacgaatggactggactttcagaggcagacggtgcaggccacaaatgcaatcacc
aatgcacatgcacaggctctgctccaacagtccaagtctgaagactcgggtgcaattccg
acctccgtccagcagggggtgctgcctcaggcccagctcatgctggctgggggacagata
gctggattgaccctgtctccagcgcagcagcagatgttgttgcagcaggcccaggcccag
ctcttggcagcagccatgcagcagcaatcagccagccagcagagcagcaccacgggggcc
agcatctctgcctccgcagccacccccatcacacagctgcccctgtcccagcccgtccag
atcacctctattccctctgtctctactcatctcccaggccagctaagccagctgggatac
ccgtatgagatggcgaccttcagcagttacctacctcagttacagcagctgcagcagcag
aacctaaccatgccccagtttgtcctggttcaacctggccaccacatcgccacccagctg
cagcctggccagttcatcatctcacagacgccgcagggccagcagagtatgtacacaacg
cagagtttcctgcaagcccataatcttctaactcaactacctcaaagccaagccaacctc
ctgcagactcagccaagcatcaaccttgcctcacagccagcgactccgtcccacactata
gcagccacgcccatccagcccctgtcccacagtcagaccccgcccaaacgcctggacaca
cccagtctggaggagcccagcgacctggaggagctggaacagttcgctaagaccttcaaa
cagagacgcattaaactgggcttcacacagggggatgttggtctggccatgggcaagctg
tatggtaacgacttcagccagaccaccatttcccgcttcgaggccttgaacctcagcttt
aagaacatgtgcaagctgaagccacttctggagaagtggctcaacgatgcagtttgtgca
gagaatctgtcgtctgacctggccctgtccagcccttgcggcctggggtcccccggtctg
ggcatggaggggctcaaccgccgacgcaagaagaggaccagcatcgagaccaacatccgc
gtggccttagaaaagagctttctggagcagaaccaaaaacctacctctgaggagatcacc
ataattgctgaccagctcaacatggagaaggaggtgatccgggtgtggttctgtaaccgt
cggcaaaaagagaagcggatcaacccccccagcagcggacacagcatcacagggacaggc
agcacccccatcaaaaccatcttcacccccaatagccccttggtggccagtacggcgagc
cttgtgaccagtaacacaccaaccacactcactttaaacccagtgatgcctctcaccagc
accagcgtctccggcctgaccttgacaggcacgacgatcggagcgaccacaaacacggca
tctgtcatctctacggcacccatggttaccgcggtgaccagctccacctcgctaagcccc
tcccccacggccctccaggccacggcagcggagacggatggaacccaggagcacacggtg
gtcatgcaggcgccatcgtcactagcaaccaatctggggacaggtcaggtgatggtggct
ggaccggggctgtcagcggccctgcaaggagctgcccagttacccaccagttctagttac
gcctccatggctggccttaacccaggactgatggcatcctcacagttcactcctgggggg
gccttgctgagcttagctccgggtgggcttggaggggctataaaccccgccatgttgagc
aacagcaccctggccaccatccaaggtctatggagcgctctggcatcgggtggcactctc
cccatcacctcgctggatgggagtggtaacctgctgtttgctaacacctcgtccggcagc
acccccaacctggtgcagcccctcttcctgaacccccagaacctgtccctgctcaccagc
aaccccgtcagcctggtgtcggccggagccgccgggggaggggccctgcaggtcacagcc
aaccaccaggtcaccacagcgaccgtcccagtgcccgcctccaccatcaccactgcctcc
aaggcccagtga
DBGET
integrated database retrieval system
