KEGG   Oncorhynchus mykiss (rainbow trout): 110501835
Entry
110501835         CDS       T07259                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110501835
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:omy03041]
    110501835
   03036 Chromosome and associated proteins [BR:omy03036]
    110501835
Spliceosome [BR:omy03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    110501835
 Complex B
    110501835
 Complex C
   U2 SnRNP specific factors
    110501835
Chromosome and associated proteins [BR:omy03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    110501835
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 DUF5870
Other DBs
NCBI-GeneID: 110501835
NCBI-ProteinID: XP_021435358
Ensembl: ENSOMYG00000019571
UniProt: A0A060XTK4
LinkDB
Position
22:complement(37972212..37995938)
AA seq 1328 aa
MAKIAKTHEDIEAQILEIQGMKAALVEEGGDQGVGLDSTGYYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIAEREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQSRSYMDVMKEQHLTKEEKEIRQQMAEKAKT
GDLKAVNGSAASQAAAAAAAAKRKRRWDQTAEKQDQSGTPSNAGTPKKMSSWDQADQAAE
QTPGHTPGHTPSNSRWDETPGRNKGSETPGATPSSRMWDPTPSHTPAGAATPGRGDTPGH
TTPGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKS
RWDETPASQMGSSTPLMTPGKTPIGTPAMNMATPSPGHLMSMTPEQLQAWRWEREIDERN
RPLTDDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPMGGMTGFHMQQEDRSMKQI
NDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAAL
RQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILV
VIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVA
SALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVD
EQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPL
MDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFK
HFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIM
GNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTV
LWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGA
LKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWM
RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAI
AIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDA
LMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEG
LRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPHVYNDEKNPYL
RYELEYFL
NT seq 3987 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaaaacacacgaagacatcgaggcccagatcctggagatccagggc
atgaaagctgccctggtggaggagggaggagatcagggtgtgggcctggactctactgga
tactacgatcaggagatctacggtggcagcgatagccgcttcgctggatatgtcacctcc
atcgcggccaatgaacaggaggatgatgatgaggaggactcgtcaacgagtctacttgga
cagaagaaaccgggatatcacgctccggtggctatactcaatgcaataccacagtcagat
gaacagtacgacccgttcgccgaacaccggcccgctaagattgcagagcgtgaagacgag
tacaaggccagacgtcgacagatgatcatctctccggagcgtcttgacccctttgcagac
gggggcaaaacgccggaccctaagctgcagtccaggtcgtacatggacgtcatgaaggag
cagcacctgaccaaagaggagaaagagatccgtcagcagatggcagagaaggccaaaaca
ggagacctgaaggctgtcaacggctctgctgcctcccaggctgctgctgctgctgccgcc
gcaaagcgtaaacgccgctgggaccagacggccgagaaacaggaccaatcaggaaccccc
agcaacgccggcacacctaagaagatgtccagctgggaccaggccgatcaggctgctgag
cagaccccaggacacacccctggccacaccccctccaacagccgctgggacgagaccccc
ggaaggaacaagggcagtgagaccccaggggccacccccagctcccgaatgtgggacccc
acccctagccacaccccggctggagcagccacgccaggcagaggggacacaccgggacac
accacccctggacacgggggagccacaggcagcgtgcgcaaaaaccgatgggacgaaacc
cccaagacggagagggagacccctggtcatgggagtggttgggccgagaccccccgtaca
gacagaggagacgagtcagtgggagagacacccacccccggggcaagtaaaaggaaatcc
cgttgggacgagacccccgccagccagatgggctcttccaccccactgatgacccctggg
aaaactcccatcggaacccctgccatgaatatggccactccttctccaggtcacctgatg
agcatgaccccagagcagctgcaggcctggcgttgggagagggagatagacgagaggaac
cgacctctcacagacgatgagctggatgccatgttcccagaaggatacaaggtccttccc
ccaccagcaggctatgtgcccatccgtaccccggcccggaagctatctgccacccccacc
cccatggggggcatgacgggcttccatatgcagcaggaggaccgttccatgaagcagatc
aatgaccagcccagtgggaacttgcccttcctcaaaccagacgacattcagtactttgac
aaactgcttgttgaggtggatgagtccactctgagcccagaggaacagaaggaacgtaag
atcatgaaactactgctgaagatcaagaacggaacacctcccatgagaaaggctgccctg
cgtcagatcacagacaaggcgagggagtttggagcagggcccctgttcaaccagatcctg
cccctgctcatgtctcctactctggaggaccaggagcgccacctgctggtcaaggtcata
gaccgcatcctctacaagctggacgacttggtccgcccatatgtacacaagatcctggtg
gtgattgagccgctgctgattgatgaagattactacgcccgagtggagggcagagagatc
atctctaacttggccaaggctgccggcctggccactatgatctccactatgagacctgat
attgacaacatggatgaatacgtcagaaatacaacagccagagctttcgctgtcgtagcg
tccgctctgggtatcccctccctcttgcccttcctcaaagctgtgtgtaagagcaagaag
tcttggcaggcccgccacacgggcatcaagattgtccagcagatcgccatcctcatgggc
tgtgccatcctgccccacctgaggagtctggtggagatcatcgagcatggtctggtggat
gagcagcagaaggtgcggaccatcagtgccctggccatcgccgccctggcggaggctgcc
acgccctacggtatcgagtcctttgactccgtactcaaacccctgtggaagggaatccga
cagcacagaggaaagggtctggctgcgttcctgaaggccattggctacctgatccctcta
atggatgctgagtacgctaactactacaccagagaggtcatgctgatcctcatcagagag
ttccagtcccctgacgaggagatgaagaagatcgtgctcaaggtggtgaaacagtgttgt
ggtactgacggtgtggaggccaactacatcaagacagagatcctgcctcccttcttcaag
cacttctggcagcacaggatggccctggacagacgcaactacagacagctggtggacacc
acagtggagctggccaataaggtgggagcagcagagatcatctctcgtattgtagatgac
ctgaaggacgaggcagagcagtacaggaagatggtgatggagaccatagagaagatcatg
gggaacctgggagctgctgacatcgaccacaagctggaggagcagctgatcgacggcatc
ctgtacgccttccaggaacagaccacagaggactctgtgatgctgaacgggtttggtacg
gtggtgaacgccctggggaagagggtgaagccctacctgcctcagatctgtggtacggtg
ctgtggcgtctcaacaacaagtctgccaaggtccgccagcaggctgctgatctcatctcc
cgcaccgccgtggttatgaagacctgccaggaggagaagctgatgggtcacctgggagtg
gtgttatatgagtatctaggagaagagtatcctgaagtactgggaagtatccttggtgct
ctcaaggccatcgtcaacgtcattggtatgcacaagatgactccaccaatcaaagacctg
ctaccgcggctgacgccaatcctgaagaacagacatgagaaggtgcaggagaactgtatt
gacctggtgggcaggattgctgacaggggtgctgagtacgtgtcggccagggagtggatg
cgcatctgctttgagctgctggagctcctcaaggcccacaagaaggccatccgcagagcc
accgtcaacaccttcgggtacatcgccaaggctatcggaccccatgatgtgctggccaca
ctactcaacaacctgaaggttcaggagcgtcagaaccgagtgtgtaccaccgtagccatc
gccatcgtggctgagacctgttctcctttcaccgtgctccccgccctcatgaacgagtac
cgtgtgcctgagctcaacgtgcagaacggcgtgctcaagtccctgtccttcctgtttgag
tacatcggggagatgggcaaggactacatctatgctgtcacacccctgctggaggacgca
ctgatggacagagacctggtccacagacagactgccagtgccgtggtgcagcacatgtcc
ctgggcgtctacggcttcggctgtgaggactcccttaaccacttgttgaactacgtgtgg
cccaacgtgtttgagacgtcgccccatgtaatccaggctgtcatgggggccctggagggc
ctcagggtggctatcggcccctgccgcatgctgcagtattgcctgcagggtctcttccac
ccagccaggaaggttcgagacgtctactggaagatctataactcgatctacatcggttcc
caggatgctctgatagctcactacccccacgtctacaacgatgagaagaacccttacctc
cgctatgagctggaatactttttgtga

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