Oncorhynchus mykiss (rainbow trout): 110502378
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Entry
110502378 CDS
T07259
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit isoform X1
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04010
MAPK signaling pathway
omy04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
110502378
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
110502378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110502378
Transcription factors [BR:
omy03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
110502378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_4
Ank_3
Ank_5
Death
Fimbrial_CS1
Motif
Other DBs
NCBI-GeneID:
110502378
NCBI-ProteinID:
XP_021436024
Ensembl:
ENSOMYG00000040602
LinkDB
All DBs
Position
23:complement(18242698..18255850)
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AA seq
930 aa
AA seq
DB search
MSGALRMDEAQYSMKMIENELMMNLSYEFMPPVDVKIEPYVPETGGFLLSTLRTHAHGPY
IQIIEEPKQRGFRFRYECEGPSHGGLPGASSERNRRTYPTVKVSNYVGIARVEVQLVTHS
DPPQVHAHSLVGRQCCTESGICSMDVGPNDLTAQFSNLGILHVTKRGVGEVLCKRLRDEK
RRQGGQHYHFTDAEEQAIGREAKELGKIMDLNIVRLKFTAYLQDSNGGFSRALKPVVSNP
IYDSKSPNASNLKISRMDKTSGSVLGGDEIFLLCDKVQKDDIEIRFYEEDDGSWEAFGDF
SPTDVHKQYAIVFKTPPYHSAEIERQVTVFLQLKRKKGGDCSDPKQFTYVPRVQDKEEVQ
RKKQKPFPYNDQWGGPLGGAGGAGRGAGGFGGGAGGGGGEEPRCFQFNQQMNGTGWMGGG
FSGFGGGGAQMSGTTAQAEGTQQQQAGGMAGQTPGQTSSPLQQQLFQIAATLQSRATRMS
KQTAGALLQYCTTGDVRVLLAMQRHLCGVQDKNGDTPLHLAIIHQQSAVTQQLVHTLLTI
QQHKVLNKLNHLGQTPLHLAVITRQVKVVDVLLRAGADPTLLDRDGRTALHLAALAGDDV
TLRVLLGHLGERYLHLVNMADYHGLHPLHLAVCKGGERCLRLLVEGGAKINAPEQKSGCS
ALHLAVRENYFKVACTLITELKADVNMCTFGGNTPLHLAASRSSPPLCSMLIAAGADKNL
ENDEPLFFSSSSSDEEQEDGPVRDFRESAIQQLPNTTPLSEGEQVNPRKRSATGHTPFDL
AKCHKVRNLLDTRQSPKPSQQSSKKPKPSSMEAERGQLDSETLSKLCELLSLNDVPWRQL
AEKLNMLSLAHLYQESPLPCHNLLENYQLGGGPVEGLVEALQSLGLTEGVRLLRQAELRE
DKQNTDQTVDSGFASQPMEEELEEPALANQ
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgtctggagcactgagaatggatgaagctcagtacagcatgaaaatgattgaaaatgag
ctgatgatgaatttgtcctatgagttcatgccccctgtggatgtcaagatcgagccctat
gtaccggagaccggtgggtttctactttctaccctacgtacacatgctcatggaccctac
attcagatcattgaggagcccaaacagagaggcttcagattccgctatgagtgtgagggt
ccgtcccacggtgggctcccaggggcctcaagcgagaggaacaggaggacctatccaact
gtcaaggtgtctaactatgtggggattgccagggtggaggtgcagctagtgacccactca
gaccccccccaggtccacgctcacagtctggtggggaggcagtgctgcacggagagtggc
atatgcagtatggatgtgggcccaaacgacctcacagcacagttcagtaacctgggcatc
cttcatgtcactaagagaggggtgggggaagtgttgtgcaagagactgagagatgagaag
aggaggcaaggggggcagcactatcattttactgatgcagaggaacaagccatagggaga
gaagccaaggagcttgggaagatcatggacctgaacatagtgaggttaaagttcacggcc
tacctccaggacagtaacggcgggttctctagggccctgaagccggtggtctccaaccct
atctatgacagcaagtcacccaatgcctcgaacctgaagatctcccgtatggataagacc
agtgggtctgtgctgggaggagatgagatcttcctactgtgtgacaaagtacagaaagat
gacattgagatccgcttttatgaagaggatgatggaagctgggaggcctttggtgatttc
tctccaactgatgtccacaagcagtacgccattgtgtttaagacgccaccgtaccacagc
gccgagatcgagcgtcaagtcactgtattcctccagttgaaaaggaagaaaggcggcgac
tgcagcgaccccaagcagtttacctacgttccccgagttcaagataaagaggaggtgcag
cgtaaaaagcagaagcccttcccctataatgaccaatggggaggacctctgggaggggct
gggggtgcagggagaggggccggaggattcggaggcggagcaggtggcggtggcggtgag
gaacctagatgcttccagtttaaccagcagatgaatggaacggggtggatggggggtgga
ttctctggttttgggggcggtggagcccagatgtcaggcaccactgcccaggctgagggg
acccagcagcaacaggcaggagggatggccggacagacgccaggacagacatcctcacca
ctacaacagcagctcttccagattgctgccactctccagagcagggccactcggatgagc
aagcagacagctggggctctactacagtactgcaccactggggacgtccgggtccttctg
gcaatgcagagacacctatgtggggtccaggataaaaacggagacacgcctttgcacctg
gccatcattcaccagcagtcagctgtgacccagcagctggttcatacactcctcaccatc
cagcaacacaaagtccttaacaagctcaaccacctcggccagactcctctccatctggcg
gtgatcaccaggcaggttaaggtggtggatgttctcctccgggccggagcagaccccacc
ctgctggaccgggacggacggaccgccctgcacctggcagcgctggccggggatgacgtc
acactccgggtcctgctgggccacctaggagaacgctacctccacctggtcaacatggcc
gactatcatggtctccatcctctccacctggctgtttgtaagggaggagagcgctgtctg
cgtctgctggtggagggcggggctaagatcaacgccccggagcagaagagtggatgctcc
gccctccacctggctgttagagagaactacttcaaagtggcctgcactctcatcacagag
ctgaaagcagatgtaaacatgtgtacgtttggagggaacactcctctccatctggctgcc
agtcgcagctccccccccctctgctccatgctcattgctgcaggagccgacaagaatctg
gagaacgacgagccgctcttcttcagctcctcctcgtcagatgaggagcaggaggatgga
ccagtaagagatttcagagaatcggcgatccaacagctaccgaacacaacaccactttca
gagggagaacaagtcaaccctcgtaagaggtcagcaacaggacatacaccctttgacctg
gctaaatgtcataaggtgagaaaccttctagacaccagacagagtcccaagcccagtcaa
caatcaagtaaaaagcctaaaccgagcagcatggaagcagaaagagggcagctagacagt
gagacgctaagcaagctgtgtgagctcctcagtctgaacgatgtgccctggagacagctg
gcagagaaactcaacatgctctcactggcacacctatatcaggagagtcccttgccctgt
cacaacttgctggagaattaccagttgggtggcggtccagtggaaggcctggtggaagct
ctacagtctctgggtctgactgaaggagtgagactactgagacaggctgagctgagagag
gacaaacaaaacacagatcagacagtggacagtggctttgctagtcagccaatggaggag
gagctggaggagccagccttggccaaccagtga
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