Oncorhynchus mykiss (rainbow trout): 110502442
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Entry
110502442 CDS
T07259
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omy04121
]
110502442
Ubiquitin system [BR:
omy04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
110502442
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
110502442
NCBI-ProteinID:
XP_036815695
Ensembl:
ENSOMYG00000035056
LinkDB
All DBs
Position
23:20901200..20942924
Genome browser
AA seq
1976 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSGGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRMRAVKDPLQIGFHLSATVVSPQTGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTYEQIIGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDDMVVLWRLA
VLDPTMSPQRRLELASQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWEVAY
PLPGITYCSADKKSASFCWARAVQQQRGAKAGLAGDTSELGGGGGRSGSSEGGGGDYKGR
TPQQEVAVRPKETIVSKRKGLSAGGGGGVLVRLGGSVCLSLEEGSSKGMYKGAGSSSSIG
GKAKLAQGGKSSSGGSGGVGGKHQAAKRRTSSEDSSLEPDMAELSLDDGSSLALGAEASN
TFDFTPPPPEMLPSPSPLLREPHKYSGGGKGAGNMPKERSFEVKRVTLAATLPATESQPA
FPLKENAAVVVEAAVALEKEVEVEMEVNGNKEVAPAGDARLSTSVAVVTVTAAAAKPPRG
GRRETGAGAVALPNQSPGAGGDPVGEDDYRAYYLNAASEEGAERVPENNHEEEPDIFAGI
KPLEQEGQMEVLFACAEALHAHGYSNEACRLAVELAGDLLANPPDLKVEQPQTKGKKSKV
STSRQTQVATNTLVKTSFLLTVLSERLELHNLAFSTGMFSLELQRPPASTKALEVKLAYQ
ESEVVALLKKIPLGLVEMTSIRDRAEQLRDGNFCDYRPVLPLMLASFIFDVLCTPVCTVV
SPTGSRPPSRNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALAL
MITYKDDQSKLKKILDKLLDRESQTHKPQTLSSFYSSKPAASSQRSPSKHAAHNAHGHGG
ATGGVSKHAPNATAAAGSSSVQVVAAGGAAGQLAGSGVQNNATPGEGVSEAREQADGAQP
VSCDQPSEAVPFKPEGTVPSRLALGGRGAYSGRCWGSPVRQKKKHTGMASIDSSAPETTS
DSSPTLSRRPLRGGWAAASWGRGQDSDSISSSSSDSLGSSSSSGSRRAGGGARAKSTDTS
RYKGRRPECHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTQPSASGGHQGPHR
NLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVECWDGHLT
PPEVASLADRASRARDPNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQVHVRYSSV
LQKTHRTTHDNLMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQTVGGGSGAQREG
PGRCRANGGAGRRPPETGHGVTDNSGNMESSGVATVTASVTAAAVVPVISVGSTIYQSHA
LPGSAMAHPHSQGLHPYTTIQAHLPTVCTPQYLGHPLQHVPRPTVFPLSGGAYPQCVCVP
SQGMHPAFIGAQYPFSVATGPHPPMAATAVTFPGIPVPSMTQIAVHPYHTETGLPLSTTV
AGATTFSSFYPVGGVHSGATIQAIQGSSLPGMSSQPVSLVSAPFPSEDEQHSQPISQQGL
HYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTEDVKWLLGLAARLGVNYVYQFCVG
AAKGVLSPFVLQEIIMEALQRLNPAHIHAHLRTPAFHQLVQRCQQAYLQYIHHRLIHLTP
ADYDDFVNIIRSARGAFCLTPVGMMQFNDVLQNLKRGKQTKELWQRISLEMATFSP
NT seq
5931 nt
NT seq
+upstream
nt +downstream
nt
atggaactaatgttcgccgagtgggaagacggagaaaggttctccttcgaagattctgac
cggttcgaggaggactcgctctgctccttcatatcagaagctgagagtctgtgtcagaac
tggaggggatggagaaaacagtctggtggaccaaattctcctacagttaagattaaagat
ggtcaggtcatccctctggtggagctttcagccaagcaggtggcattccatatcccgttt
gaggtggtggagaaggtctatcctcctgtccctgagcagctgcagctacgcatcgcctac
tggagcttccctgagaacgaggaggacatccggctgtactcgtgtctggccaacggcagc
ccagatgagttccagcgaggggagcagctgtaccggatgagggctgttaaagaccctctg
cagataggtttccacctcagtgccactgtggtatcgccccagactggccaatcaaaaggg
gcatacaatgtggctgtcatgtttgatcgctgccgcattacctcctgcagttgcacctgc
ggggctggggccaagtggtgcgcccacgtggtggccctctgcctcttcaggatccacaac
gcgtctgcagtgtgcctgcgagcccccgtttcagagtccctgtcccggctgcagagggac
cagctgcagaagtttgcccagtacctaatcagcgagcttccccaacagattttgcccaca
gcccagaggctcctggatgagctcctgtcctcccagtccacagccatcaacacagtgtgt
ggggctccagaccccactgctggcccctcggcctctgaccagagcacttggtatctagat
gagtccacgctcagtgacaacatcaagaagacgctgcacaagttctgtggcccctctcct
gtggtcttcagtgacgtcaactccatgtacctgtcatccacggagccaccggctgcggca
gagtgggcatgtctgctgagacctctgagggggcgggagcctgaggggatctggaacctc
ctgtctatcgtcagggagatgttcaagaggagggacagcaacgctgcacctctactagag
atcctcactgagcagtgtctcacttatgaacagattattggctggtggtacagcgtgcgt
acgtcggcgtcccacagcagtgccagcgggcacacggggcgcagtaacgggcagtcggag
gtggcagcccacgcctgcgccagcatgtgtgatgacatggtggttctgtggaggctggct
gtgctagaccctaccatgagccctcagaggcgtttggagctggcctcccagctcaagcag
tggcatctgaaagtgattgagattgtgaagcgagggcaacatcgcaagtccctggacaaa
ctgttccagggcttcaagccagccgtggagtcctgctactttaactgggaggtggcctac
ccactgccaggcatcacctactgcagtgctgacaagaagagcgcctccttctgctgggcc
agggcagtgcagcagcagagaggggccaaggctggcctggctggagacacctctgaactt
ggaggaggaggagggagatctggcagctctgagggaggtgggggagactacaagggcaga
actccccaacaagaagtggctgtcaggcccaaagagaccattgtgagcaagaggaagggg
ttgtcggccgggggcggaggaggggtcctagtgcggctagggggcagtgtctgtctttct
ctagaggagggcagtagtaaggggatgtacaaaggcgcaggttcctcctcgtccattggg
ggcaaggctaagctggcccagggggggaagtcgtcctccgggggatcaggaggggtaggg
ggaaaacaccaagcggccaagcggcgcaccagcagtgaggacagctccctggagcctgac
atggccgagctgagcctggatgatggctccagtctggcgctgggcgccgaggccagtaac
acctttgacttcacacccccgccacccgagatgctaccctcaccaagcccgctactcaga
gagccacacaaatacagtgggggagggaaaggggccggaaacatgcccaaggagcgctcc
ttcgaggtcaaacgtgtcactcttgctgccaccctgcctgccactgagtcccagcccgcc
ttccccctcaaggagaacgccgctgtcgtcgtggaagcggctgttgccttggagaaggag
gtggaagtagagatggaggtgaatggaaataaggaggtggcccccgctggagacgctcgg
ctctccacctcagtcgctgttgttaccgtgactgctgctgccgccaagccaccgcggggt
gggcgccgagaaactggagctggagccgtagccctgcccaatcagagcccaggggcaggg
ggagaccctgttggagaggatgactaccgggcctactacctaaatgcagcctctgaggag
ggggcagagagagtgccagagaacaaccatgaggaggaaccagacatctttgctgggatc
aagccactggagcaggagggccagatggaggtgctgtttgcatgtgcagaggccctccac
gcccatggctacagcaacgaggcctgcagactggcagtggagctggctggagacctgctg
gccaaccctccagacctgaaggtggagcagccccagacgaagggtaagaagagcaaggtg
tccaccagcaggcagacccaggtggccaccaacaccctggtcaagacctccttcctgctg
acggtgctgagcgagaggctggagctccacaacctggccttcagcacgggcatgttctcc
ctggagctgcagaggcccccagcctccaccaaggccctggaggtcaagctggcctaccag
gagtcagaggtggtggctctgctgaagaagatccctctgggcctggtggagatgacgtcc
atacgggacagggccgagcagctccgagacgggaacttctgtgactacaggcctgtcctg
cccctcatgctggccagcttcatatttgatgtgctgtgtaccccagtttgtacagttgtc
tcccccacaggttcccgtcctcccagccgtaaccggaacaacgagatgcctggagacgag
gagctgggctttgaggctgctgtcgcagcactgggtatgaagaccacagtgagcgaggca
gagcaccctctgctgtgtgaggggaccaggagagagaaaggagacttggctctggctctt
atgatcacatacaaggatgaccagagcaagctgaaaaagatcctggacaagctgctggac
agagagagccagacccacaagccccaaaccctgagttccttctactccagcaagccagct
gccagcagccagaggagcccgtccaagcacgctgcccacaatgctcacggacacggaggt
gccaccggaggggtgtccaaacacgccccaaacgccacggctgcagctgggtcctcctct
gtgcaagtggtggctgctggtggggcagcaggacaactggcgggcagtggggtgcagaac
aacgccacacccggagagggcgtcagtgaggccagagaacaagcagatggcgcccagcct
gtgtcatgtgaccagccgagtgaggcggtcccattcaagcccgagggcactgtgcctagt
cgcttggcgctgggaggacggggggcatacagcgggcgctgctggggctctcctgtccgc
cagaagaagaaacacacaggcatggcgagtatcgacagcagtgctcctgagaccacctca
gacagctcccccaccctcagccgacgtccactcagagggggctgggctgcggcctcctgg
gggaggggccaggacagtgacagcatcagcagctcttcctctgattcgctgggctcctcc
tcatccagtggctctcgcagggccggagggggagctagggcaaagagcacagacaccagc
aggtataaagggcgtcgtcctgagtgccatgcaccacatgtgcccaaccagccatcggag
gcggcggctcacttctactttgagctggccaagacggtgctgatcaaggccgggggcaac
agctccacctccatcttcacccagccctcagccagcgggggccaccagggtccccaccgc
aacttgcacctctgtgccttcgagattggcctgtacgccctgggcctgcacaactttgtc
tcgcccaactggctatccaggacctactcctcccacgtctcctggatcacaggccaggcc
atggagattggcagtgctgccctcaacatcctggtggaatgctgggacgggcacctcacc
cctcccgaggtggcatcactggcagacagggcatcacgggcgcgggaccccaacatggtt
cgcgctgcggccgagctggccctgagctgcctgccccatgcacacgccctcaaccccaat
gagatccagagggccctggtgcagtgcaaggaacaggtacatgtccggtactcttcagtt
ctgcagaagacacatcggactactcatgacaatctgatgctagagaaagcctgtatggct
gtagaggaggcagccaaggggggcggtgtgtaccctgaggttctgtttgaggtggcccac
cagtggtactggctctatgagcagacagtaggagggggctcaggggcccagcgcgagggc
ccgggacgctgcagggccaacggtggagctgggagaaggcccccggagactggtcacggt
gtgacggacaacagtggcaacatggagtcctctggtgttgccacagttactgcctctgtg
acagcagcggctgtggtgcccgtcatctctgtgggctccaccatctaccaatcacacgcc
cttcctggctctgccatggcccacccccactcccagggcctgcatccctacactaccatc
caggcccacctgcccactgtctgcaccccccagtacctggggcacccgctgcagcatgtc
ccccggcccactgtgttccccttgtcagggggtgcgtacccacagtgtgtatgtgtgccc
tcccagggaatgcacccggcctttatcggtgcccagtacccgttctcagtggccaccggc
ccccatccgcccatggcagcaactgcggtcaccttccctggtattcccgtgccgtccatg
acccagatcgccgtccacccttaccacactgagaccggcctgcctctgagcaccactgta
gcaggagccacgactttttcctctttctatccagtaggtggcgtccattcaggcgccaca
atccaggccattcaggggtcatctcttcctggtatgtcttcccagcccgtctcattggtc
agcgcccccttcccgtctgaagacgagcagcatagccagccaatcagccagcagggtctt
cactacctgcactcagcctacagagttggcatgctggctttggagatgcttggaaggagg
gctcacaacgaccaccccaataacttctcccgcagccccccatacacggaggatgtcaag
tggctcctgggcctggctgcacggctaggtgtgaactacgtgtaccagttctgtgtgggt
gcggctaagggtgtgctcagccccttcgtccttcaggagatcatcatggaggctctccag
agactcaaccccgcccacatccatgcccacctccgcacgcccgccttccatcagcttgtg
cagcgctgccagcaggcctatctacagtatatccaccaccggctgatccacctgaccccg
gccgactacgacgactttgtcaacatcatccgcagtgcccgcggggccttctgtttgacc
cctgtgggaatgatgcagttcaacgacgtgcttcagaacctgaagaggggcaagcagacc
aaggagctgtggcagcgcatctctctggagatggccaccttctccccatga
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