Oncorhynchus mykiss (rainbow trout): 110503300
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Entry
110503300 CDS
T07259
Name
(RefSeq) neuronal PAS domain-containing protein 1 isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110503300
Transcription factors [BR:
omy03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
110503300
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
110503300
NCBI-ProteinID:
XP_036817289
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Position
24:3985861..4029119
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AA seq
783 aa
AA seq
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MATMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMRTFASQGDPPWCPLLEGENHCSKVRRSSHSLA
TDMFEQHLGAHLLQSLDGFVFVVSSEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPAD
HVEMAERLGIRPHLRAEAGCHVAPESASSSASTSSLAGTPEPAPSSPLSPGNEPPDRGFF
IRMKSTLTKRGLHVKSSGYKVRVIHVTGRIRCRPAMVPGSARSVRRPMGLVALAHTLPPS
TLNEVRMESQMFVFRVNMDLQVTYCENRISEYMDLSPAEVVGHTCYHFIHVEDLDNIRQS
HEDLLRKGQVVTGYYRWLQRRGGYLWVQSCATVSINHKAPHERNVIWVNYVISRTELPDT
PLDLLQLPESLRAERLKASSSPSEHSPQTRGPQPMKSSVCKGDPDSKLREIYNPGVQSGD
RRKRPLRSDSEGAPAETRRRLEEFRQRERSVSASSDLGSESGGEEREWEHGGDSASVKRE
EGPSKRGEETPMRGDRGGGAHNGRAVIQHLKSVVSSPLSGRPNIKTEHEALIAGGRWTHT
HTSSHIQPLPSHTHTPCGSLNGDSPLTPIPDSSSSSEAPPNGIFTPPSPSMSPPMSGSSP
LPCEERGMLSGGRGGGPDFELLHRLAAGGAAGRVLFHPLALGPQGPQSLYAPSTIRYAPP
ELPHSHLGAEGLRSDHHKGPPAFFPHLQRLAGLPSFSGFSASDNPFNPFCVNGLRGAAGS
EED
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccatgccgttcgtcagcgagggaaagtgtgtgagcgtggagtgggacttccta
cagggactactggccaaaccccccaccctgccctgtttgcagaacctgcggaaggagaag
tctcgtaatgccgcccgttcccgtcgcggcaaggagaactttgagttctttgagctggcc
aagatgctccctctccccggggccatcaccagccagctggacaaggcctcggtcatccgc
ctcaccatcagctacttgcacatgcgcaccttcgccagccagggagacccgccctggtgc
cccctgctggaaggagagaaccactgcagcaaagtgcgacgctcctcccactctctggcc
actgacatgttcgaacagcacctgggagcacacttgttacagtccctggacggctttgtg
tttgtggtaagctcagagggacgcttcctctacatatcagagactgtttccatctacctg
ggcctctcacaggtggagttgacgggcagcagtgtgtttgactacatccacccagcggac
catgtggagatggctgagcgtctgggcatcaggccccacctgagggccgaggctggctgc
cacgtggcccccgagagcgcttccagctctgcctccacatcctccctggccgggaccccc
gagcctgccccctcaagccccctctctcctgggaatgaacctcctgaccgaggcttcttc
atccgtatgaagtccaccctgaccaagagaggcctccacgtcaagtcctcgggctacaag
gtcagagtgatccatgtgaccgggcgaatccgctgtcgccctgccatggtgccaggctcc
gcccgctcggtgcgtcggccaatgggcttggtggcccttgcgcacacgctcccgccctcc
acgctgaacgaggtgcgcatggagagccagatgtttgtcttccgggtcaacatggatttg
caggtcacctactgcgagaacaggatctcagagtacatggacctgagcccggcagaggtg
gtgggacacacctgctaccacttcatccacgtggaagacctggataacatcagacagagc
catgaggacttgttgaggaagggtcaggtggtgaccgggtactaccgctggctccagagg
agagggggttatctgtgggtccagtcctgtgccaccgtctccatcaaccacaaagccccc
cacgaacgcaacgtcatctgggtcaactacgtcatcagtcggacagagctcccagacact
cccctggatctgctgcagctcccagagagtctgagggcggagcgtctgaaagccagctcc
tccccttcggaacactcaccacaaacccggggcccacagccaatgaaaagctctgtgtgt
aaaggtgaccctgactcgaaactgagagagatctataatcccggtgtccaatcaggggac
aggaggaaacgtcctctgcggtctgactctgagggtgctcccgcggaaacgcggcgtcgc
ctggaagagttccgccagagagagcggagtgtgtcagcctcctcagacctgggcagcgag
agcgggggagaggagagagagtgggagcatgggggagacagcgcgagtgtcaaacgagag
gaggggccttcgaaacgaggcgaggagacccccatgaggggcgacaggggcggcggggcg
cacaacggccgtgcggtaatccagcacctgaagagtgtagtgtcctcgcctctctctggc
cgccccaacatcaagactgaacatgaggcactgatcgcagggggtcgctggacacacaca
cacacctcctcacacatacaacccctaccctcacacacacacacaccctgcggcagcctg
aacggcgacagtcccctcacccctatcccggactcctcctccagcagtgaagccccaccc
aatggtattttcaccccgccctccccctccatgtcccctccgatgtccggctcctcccct
ctaccctgtgaggagcggggaatgttgtctggaggcagggggggcgggccggactttgag
ctgttgcatagactggcagcggggggtgctgcaggacgggtgttgtttcaccccctggcc
ctcggcccccaggggccacagagcctgtacgcccccagtaccatccgctatgcgccccca
gagctgccccactcccacctcggtgctgaggggctgcgctccgaccaccacaagggcccc
ccagccttcttcccccacctccagaggctggccggcctgccctccttcagtgggttctcc
gcctcggacaatcccttcaaccccttctgtgtgaacggactgaggggggccgcggggtcc
gaggaggactga
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