Oncorhynchus mykiss (rainbow trout): 110503343
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Entry
110503343 CDS
T07259
Name
(RefSeq) neurobeachin isoform X1
KO
K24183
neurobeachin
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110503343
Membrane trafficking [BR:
omy04131
]
Protein recycling
Rab GTPases and associated proteins
Rab4 associated proteins
110503343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
Laminin_G_3
WD40
Neurobeachin
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
PIGA
Motif
Other DBs
NCBI-GeneID:
110503343
NCBI-ProteinID:
XP_036817593
LinkDB
All DBs
Position
24:complement(14071786..14401799)
Genome browser
AA seq
2966 aa
AA seq
DB search
MTSERPAVKMPGALSLSDRQIPAGHGQPGASGTGEIMVSGSGSMVLPAGMINPQVPIRNI
KMKFAVLIGLIQVGEVSNRDIVETVLNLLVGGEFDLEQNFIIAAAESLGCMVELLEHCDV
TCQAEVWSMFTAILRKSVRNLQTSTEVGLIEQVLLKMSSVDDMIADLLVDMLGVLASYSI
TVKELKLLFSMLRGDRGLWPRHAVKLLSVLNQMPQRHGPDTFFNFPGRSAAAIALPPIAK
WPYQNGFTLNTWFRMDPLNNINVDKDKPYLYCFRTSKGIGYSAHFVGNCLIVTSLKSKGK
GFQHCVKYDFQPRKWYMISIVHIYNRWRNSEIRCYVNGQLVSYGDMAWHVNTNDSYDKCF
LGSSETADANRVFCGQLGAIYVFSEALNPAQIFAIHQLGAGYKSTFKFKSESDIHLAEHH
KQVLYDGKLASSISFTYNAKATDAQLCLESSPKENASIFVHSPHALMLQDVKAIVTHSIH
SAIHSIGGIQVLFPLFSQLDYHQPNDQHNYQHHETQLETTVCATLLVFLVDLLKSSVAMQ
EQMLGGKGFLVIGFLLEKCSRVHITRAVLEQFLSFAKYLDGLTHGAPLLKQLCDHILFNA
AIWIHTPAKVQLSLYTYLSAEFIGTATIYTTIRRIGTVLQLMHSLKYYYWTCNPEASSGI
TPKGLDGPRPTQQEIISLRAFLLLFLKQLILKDRGVKEDELQSILNYLLTMHEDDNIHDV
LQLVVALMSEHPASMIPAFDQRNGIRVMYKLLASKTESIRVQSLKVLGYFLKHLGHKRKV
EIMHTHSLFTLLGERLMLHTNTVSVTIYNTLYEILTEQVCTQVVHKPHPEPDSTIKIQNP
MILKVVATLLKSSSPSVELMEVRRLFLSDMIKLFSNSRENRRCLLQCSVWQDWMFSLGYI
NPKNTEEQKMMEMVYSLFRILLYHAIKYEWGGWRVWVDTLSIAHSKVTYEAHKEYLAKMY
EDYQRQEEENIKKGRKGLVSTISGLQDLQAGGIQGNMEIREVDDHSQTQTPESEADYPET
PGHPRNILSEAKTGEEGGLEGTERTGSGVRVEVHDLLVDIKAEKVEATEVKLEDLDLSPE
PLGVTVGVAGSVVSEDRGGALVQVDSLLDNVYCAAVEKLSSSAASGVMVPNATVGVATDN
HNTGPLITLADDDKDSLPSNSSFLFGQEEPLVLPSPGSNPQPDPEPPVPPARSHDLGLLA
HMTGSSELGIIGMVSPGGPINSIVEEERLKLQTTLGDVTSMSREEACSKGSVFTDTGAGA
SAGGSGVSEGGEPSAGVKGSGADAVSNTSGTERSYDRKDKEVKKIQTTATTQSLHGRTAA
QLERALRVDLGFRGMPMTEEQRRQFSPGPRTTMFRIPEFKWSPMHQRLLTDLLLALETDV
HVWRSHSTKSVMDFVNSNENIIFVHNTIHLLSQMVDNIIIACGGILPLLSAATSPSAELE
NIEAVQGMSSETAVSFLSRLMAMVDVLVFASSLNFSEIEAEKNMSSGGLMRQCLRLVCCV
AVRNCLDVRQRQRDRGTNSKSQDNLYGTASANKDPDRLLQDVDINRLRAVVFRDVDDSKQ
AQFLALAVVYFISVLMVSKYRDILEPQREPNRMISQSACSIRNEINSPTSTETPLAYPDH
NKEPPTPVEELHIGRGSLPHTDSGIGEEQVTSVLNGADLEPSGPGRVDVMSALLGSLSFG
EKHSQEFLLEPPGLEVLTTASSISSISQSNINVREILKSLVAGPGEGVEPGPEPLPYPDP
AVQRETHHPMLPMQFHSFDRSVVVPVKKPPPGSLAVNTVGHTSSSSLATGSTPNIFSAAS
NPAKSMINTTGATDSASSSSTSSSSFVNGATSKNLPAVQPVAPMPEDTVENMSALLCEVD
QDLRVFSWSLQRGHTETETEMAPRGAGQCHSITTKLERALEKVAPLLREIFVDFAPFLSR
TLLGSHGQELLIEGLVCMKSSTSVVELVMLLCSQEWQNSIQKNAGLAFIELINEGRLLCH
AMKDHIVRVANEAEFILNRQRAEDVHKHAEFESNCAQYAADRREEEKMCDHLISAAKHRD
HVTANQLKQKILNILTNKHGAWGSLAQSQLNDFWRLDYWEDDLRRRRRFVRNPFGSTHLD
IPCKTLDDYDSEEDELVKSKKGFRSQAVANQSPETDLMLDGDDDTASLLQEKEMDNLAAL
FLPRLFVSRGPVVLSTPAQLVAPVIVARGTLSITTTEIYFEVDEDDPSFKRLDSTVLAYS
EGLHGKWMFSEIRAVFSRRYLLQNTGLEVFMANRTSVMFNFPDQATVKKVVYSLPRVGVG
TSYGLPQARRISMATPRQLFKSSNMTQRWQRREISNFEYLMFLNTVAGRTYNDLNQYPVF
PWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEEDQTPPYHYNTHYS
TANSTLLWLLRIEPFTTFFLNANNNKFDHPDRTFSAITRSWRHCQRDTSDVKELIPEFYY
LPEMFGNSNGYHLGQREDGSMVCDVELPPWANKPEDFVRINRMALESEFVSCQLHQWVDL
IFGYKQRGPEAVRALNVFHHLTYEGSVSLDSITDPALREAMEQQILIVGQTPSQLLIEPH
PPRSSAMHLCFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLSVPAAVTVTC
SRLFAVNRWHNTVGLRGAPGYSLEQAHHLPIEMDPLIANNTGNNKRQITDLVDQSIQINT
HCFVVTADNRYILVCGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIV
SGSRDATLLLWYWSGRHHIIGDNPNNSDYPAPRAVLTGHDHEVVCVSVCAELGLVISGAK
EGPCLVHTITGDLLRALEGPDNCMCPRLISVSSEGHCIICYERGRFCNFSINGKLLAQME
VNDSTRAIMLSSDGQNLVTGGDNGVVEVWQACDFKQLYIYPGCDAGVRAMDLSHDQRTLI
TGMASGSIVAFNIDFNRWHYEHQNRY
NT seq
8901 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcgagaggccggcggtgaagatgccgggtgctttgtcgctttctgaccgacaa
atcccagcgggtcatgggcagccgggggcctctggtaccggggaaataatggtatctggc
tcgggctctatggttctaccggccgggatgatcaacccgcaggttcccatccggaatatc
aagatgaaattcgcagttctgatcggattgatccaggtgggggaggttagcaacagagat
atcgtggagactgtgctcaacctgctggttgggggtgagtttgacctggagcagaacttc
atcatagcggcggcagagagcctaggctgtatggtggagctgttggagcactgtgatgtg
acctgccaggctgaggtgtggtccatgttcacagccatcctcaggaagagtgtccgtaac
ctccagaccagcactgaggtgggcctcatagagcaggtactgctgaagatgagctccgtt
gacgacatgatcgcagacctgctggtggatatgttaggagtgctagccagctacagcatc
acagtgaaggagctcaaactgctgttcagtatgctgaggggagaccgaggactctggccg
aggcatgcagtgaagctgctgtctgttctgaaccagatgcctcagagacacggtccagac
actttcttcaacttccccggacgcagtgctgcggccatagcgctgcctcccattgctaag
tggccttaccagaacggcttcactctcaacacctggttcagaatggaccctctaaacaac
atcaacgtagacaaagacaaaccatatctctactgctttcgcaccagtaaaggaatcggc
tactctgcacattttgtgggcaactgtctgatcgtgacatcgctgaagtctaaaggcaaa
ggctttcagcactgtgtcaaatatgactttcaacctaggaagtggtacatgatcagcatc
gtgcatatctacaaccgctggaggaacagtgagatccgttgctatgtcaacggccagctg
gtctcctatggcgacatggcctggcacgtcaacaccaacgatagttatgataagtgcttc
ctgggttcgtcggagacagctgacgctaacagggtattctgtggtcagctgggggccatc
tatgtgttctctgaggctctcaacccagctcagatatttgccattcatcagctgggagcg
ggctataagagtacgtttaagtttaagtcggagagtgacatccacctggcggagcaccat
aagcaggtcctgtatgatggcaagctggccagctccatctccttcacctacaacgccaag
gctactgacgcccagctctgcctggagtcatcgcccaaggagaacgcctccatctttgtc
cactcaccccacgcccttatgctacaggatgtgaaggccatagtgacccactccatccac
agtgccatccactctataggaggaatccaggtgctgttccctctcttctcccagctggac
taccatcaacccaacgaccagcacaactaccagcaccatgagacccagctggagactacc
gtctgtgccaccctcctggtgttcctggttgacctgttgaagagctcggtggcgatgcag
gaacagatgctgggagggaaaggattccttgtaatcgggtttctgttggagaagtgctcc
agggtccatatcacacgtgcggtccttgagcagttcctgtccttcgctaaatacctggac
gggttaacccacggagcaccactcctcaaacagctctgtgaccacatcctgttcaacgca
gccatctggatacacacccctgccaaggtccagctctcattgtacacgtacctgtctgca
gagtttatcggcacggcaaccatctacaccaccatccgccgtattgggacagtgctgcag
ctgatgcacagtctgaagtactactactggacctgcaaccctgaggccagcagtggcatt
acacctaaaggactggatggtccaaggcccacccagcaggagatcatctctctcagggct
ttcctgttgctgttcctcaaacaactcatcctcaaggaccgaggcgtgaaggaggatgag
ctgcagagtatcctgaactacctgctaaccatgcatgaggatgataatatccatgatgtt
ctccagctggtagtggctctgatgtcagaacacccagcctccatgattccagccttcgac
cagaggaacggcatacgggtgatgtacaagctgttggcatctaagactgagagcatcaga
gtccagtccctcaaagtcctgggatatttcctcaaacacctgggacacaaaaggaaggtt
gagatcatgcacacacacagtctcttcactctgctgggggagaggctgatgctacacacc
aatactgtatcagtgaccatctacaatacgctgtacgagatcctgactgagcaggtgtgt
acccaggtcgtccacaaaccccaccctgaaccagactctacaatcaagatacagaacccc
atgattcttaaggtagtagcgactctgttgaagagctcgtcccccagcgttgagctgatg
gaggttcgacgtctcttcctctcagacatgatcaaactattcagcaacagccgcgaaaac
cgacggtgtttgttgcagtgttcagtatggcaggactggatgttcagtctggggtatatc
aaccctaaaaacacagaggaacagaagatgatggagatggtctatagcctcttcaggatc
ctgctctaccatgccatcaagtatgaatggggaggctggagggtctgggtggatacactc
tccatcgctcactccaaggtaacgtacgaggcccataaggagtacctggctaagatgtat
gaggactaccagcgtcaggaggaggagaacattaagaaggggaggaagggtctggtcagc
accatctcaggcctgcaggacctccaggccgggggcatccaggggaacatggagatcaga
gaagtagacgaccactctcagacacagaccccggagagcgaggccgactaccccgagact
cccggccaccctcggaacatactgtcggaggcgaagacgggggaggagggggggctcgag
gggacagagaggacggggtcaggggtcagagtggaggttcatgacctgctggtggacatc
aaggctgagaaggtggaagcgacggaggtgaagctggaggacctggacctgtctccagag
ccgctgggcgtgacagtgggtgtggctgggagtgttgtctctgaggacaggggcggggcg
ttggtccaggtggactccctattggacaacgtgtactgtgctgctgtagagaagctgagc
agcagcgccgccagcggagtaatggtccccaacgcaaccgtcggtgtagccaccgacaac
cacaacaccggtcccctcatcaccctcgctgacgacgacaaggacagtctccctagcaac
agcagcttcctgtttggccaggaggagcccctggtcctgccaagtcctggttctaacccc
caaccagaccccgagcccccagtccccccggctcgcagccatgacctgggcctgctggcc
cacatgacgggcagttctgagctggggatcatcggcatggtcagtcctggtggtccaatc
aacagcatcgtggaggaggagaggttgaagctccagaccaccctgggtgacgtcacctca
atgtccagggaagaggcctgctctaaggggtcagtgttcacagacacgggggctggagct
agtgctggagggtctggggtgtcggaggggggagagccctcggctggtgtgaaaggtagt
ggggcggatgcagtcagcaacacctcaggcacagagaggtcatacgacagaaaggacaaa
gaggttaagaagatacagaccactgctactacacagtccctgcacggtcgtacggcggcc
cagttagagcgtgccctgcgtgtggacctgggcttcagagggatgcccatgacagaggag
cagcgacgccagttcagccctggccctcgcaccaccatgttccgtatcccagagttcaaa
tggtcgcccatgcaccagcgcctcctcaccgacctgctgttggccctggagacagacgtc
catgtctggaggagccattcaaccaaatctgtcatggactttgtcaacagcaatgagaac
ataatctttgtccacaacaccatccacctcctctctcagatggtagacaacatcatcatc
gcctgtggagggatccttcctctgctctctgctgctacctctccttctgctgagttggag
aacatcgaggcagtccagggcatgtcttcagagacggctgtttccttcctgtcccgtctc
atggccatggtggacgttctggtgtttgccagctcactcaacttctctgagatagaggct
gagaagaacatgtcctctggaggcctgatgagacagtgtctacgactggtgtgttgtgta
gcagtgaggaactgtctggacgttagacagagacagagggacagagggaccaacagtaag
agccaggacaacctgtatggtacagcatctgccaacaaggaccctgacaggcttttacag
gacgtcgacatcaaccgtctgagagctgtcgtgttccgggatgtggatgacagtaagcag
gcccagttcttggccctagcggtggtctacttcatctctgtcctcatggtgtcaaagtac
agggacatcctggaaccccaaagagagcccaacaggatgatcagccaatcagcatgcagc
attcgcaacgagatcaactcacctaccagcacagagacccccctggcctaccctgaccac
aataaggagccccccacccctgtagaggagctccacatagggagaggatctctgccgcac
actgactctggcattggagaggaacaggtgaccagtgtgttaaatggggcagacctggaa
ccttcaggacccgggcgtgttgacgttatgtccgccctgcttggcagcctttcctttggg
gagaagcatagccaggagttcctcttggagccgcctggcctggaggttctaacaaccgcc
tcctccatctcctcgatcagtcaatcaaacatcaacgtcagagagattctgaagagccta
gtggctgggccaggagagggggtggagcctggaccagagcccctcccctaccctgatcct
gccgtacagagagagacccatcatcccatgctgcccatgcagtttcactcctttgacagg
agtgtggtggtcccagtgaagaagcctccaccaggcagtctggctgtgaacacagttgga
cacacatcctccagtagcctggcaacaggctccacccccaacatcttttctgcagcctcc
aaccccgccaagagcatgatcaacaccaccggagctacagactcagcctcctcttcctcc
acctcttcctcatccttcgtcaacggggccactagtaagaacctgcctgctgtccagcca
gtggcgcccatgcctgaagacacagtggagaacatgagtgcgttgctctgtgaggtggac
caggatctgagagtctttagttggtccctgcagcgtggccacacagagacagagacagag
atggcccccagaggtgcaggccagtgtcatagtatcactactaagttggagcgtgctctg
gagaaggtggcccccctcctcagggagatctttgtggactttgcaccgttcctctctagg
accctgttgggaagccatggccaagagctactcatagaaggtctggtgtgtatgaaatcc
agcacctctgtcgtggaactggtcatgttgctctgctctcaggagtggcagaactcgatc
cagaaaaatgcaggccttgccttcattgagctcatcaatgagggaagattgctgtgtcat
gctatgaaggaccacatcgtgcgtgttgccaacgaggcagagttcatcctcaacagacag
agagcagaagacgtccataaacacgctgagtttgagtccaactgtgcccagtacgctgct
gatcggagggaggaggagaagatgtgtgatcacctgatcagcgctgccaaacacagagac
catgtaactgccaaccagctcaaacagaagatcctcaacatcctcaccaataagcatgga
gcctggggcagcctggcacagagtcagctgaatgacttctggcgtctggactactgggag
gacgatctacggaggaggcggagattcgtacggaacccctttggctccacccacctggac
atcccctgcaagacgttagacgactatgacagcgaggaggacgagttggtcaagtcgaag
aaggggttccgcagccaggcagtagccaatcagagcccagagacggacctgatgttggat
ggagacgacgacactgccagtctgctgcaggagaaggagatggacaacctggctgcgctg
ttccttcctcgcctgtttgtctccagaggcccagtggtcctcagcaccccagcccagctg
gtggccccagtaatagtggcgcgagggacgctctccatcacgacgaccgagatctatttc
gaagtggacgaggatgacccctccttcaaacggcttgactccacggtcctggcgtactcc
gagggtctgcatggtaagtggatgttcagtgagatcagagcggtcttctccaggcgatac
ctgctccagaacactggcctggaggtcttcatggccaacaggacgtcagtgatgtttaac
ttcccagaccaggcaacagtgaagaaggtggtctacagtctacccagggtcggagtggga
accagctatggcctaccacaagccaggcgtatctccatggcgacgccccggcagctcttc
aagtcgtctaacatgacccagcgctggcagaggagggagatctccaacttcgagtacctc
atgttcctcaacaccgtcgcagggaggacctacaatgatctgaaccagtacccggtgttt
ccctgggttctcaccaactatgagtccgaggagctggacctcaccctgccgggcaacttc
agagatctctccaagccaatcggagcgttgaaccccaagcgtgcagtgttctatgcagag
cgctatgagacctgggaagaggaccagacacccccatatcactacaacacccactactcc
accgctaactccaccctgctctggctgctcaggatagagcctttcaccacgttcttcctg
aatgctaacaacaacaagtttgaccatccagaccggaccttctcagccatcacccgctcc
tggaggcactgccagagagacacctcagacgtcaaggagttgattccagaattctactac
ctgccagagatgtttggtaacagtaatggttaccacctgggccagagggaggacggcagc
atggtgtgtgatgtagaactgcctccctgggccaacaagcctgaggactttgtcaggatc
aaccggatggccctggaaagtgagtttgtgtcgtgtcagctgcatcagtgggttgacctt
attttcggctacaagcagcgcgggcctgaggcggtgcgcgccctcaatgtctttcaccac
ctgacctacgagggttccgtcagcctggacagcatcactgaccccgccctcagagaggcg
atggagcagcagattctgattgttggacagactccgtctcagttgctcattgagcctcat
cctcctcgcagctcggccatgcacctgtgtttccttccccagagtcctctgatgtttaag
gaccagatgcagcaggatgtgatcatggtgttgaagttcccctccaactccccggtgaca
cacgtagcagccaacaccctgccacacctctctgtccctgccgctgtcaccgtcacctgt
agccgactgtttgctgtcaaccgctggcacaacaccgtcggtttgagaggagcgccaggt
tactccctggaacaggcccaccacctgcccatagagatggaccctctgattgccaacaac
accgggaataacaagcgtcagatcacagacctggttgatcagagcatccagatcaacaca
cactgctttgtggttaccgccgacaaccgctacatcctggtctgtggcttctgggacaag
agcttcagagtctactctactgagacaggtaagctgacccagatagtgtttggccactgg
gacgtggtgacgtgtctggccaggtcagagagctacatcgggggagactgctacatcgtg
tcagggtccagagatgctacactgctactgtggtactggagcggacgacaccacatcata
ggagacaaccccaacaacagtgactacccggcaccgcgagctgtgctgaccggccatgac
catgaggtggtgtgtgtctctgtgtgtgctgagctgggactggtcatcagtggagccaaa
gagggtccgtgtctggtccacactataacaggggacctgctgcgggccctggagggccca
gataactgcatgtgtccccgcctcatatctgtgtccagcgagggccactgtatcatctgc
tacgagagaggacgtttctgtaacttcagcatcaacgggaaattactggctcagatggag
gtcaacgactcaacacgggccattatgctgagtagtgacggtcagaacctggtgacagga
ggagacaacggggtggtggaggtgtggcaggcctgtgacttcaaacagctctacatctac
ccaggctgtgatgctggtgtccgcgccatggacctctctcacgaccagaggactctcatc
actggcatggcatccggcagcattgtggcgttcaacatcgacttcaaccggtggcactac
gagcaccagaacagatactga
DBGET
integrated database retrieval system