Oncorhynchus mykiss (rainbow trout): 110503539
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Entry
110503539 CDS
T07259
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04270
Vascular smooth muscle contraction
omy04625
C-type lectin receptor signaling pathway
omy04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
110503539
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
110503539
09153 Circulatory system
04270 Vascular smooth muscle contraction
110503539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110503539
Membrane trafficking [BR:
omy04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
110503539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
NTS
PH
Motif
Other DBs
NCBI-GeneID:
110503539
NCBI-ProteinID:
XP_036817010
UniProt:
A0A8C7TNQ9
LinkDB
All DBs
Position
24:1741919..1812173
Genome browser
AA seq
1454 aa
AA seq
DB search
MSDTQSSITDRFPNKANRSSSILSKDHPPDKKPKSDKPSVSASHEFDPTDVLVQKSDCVL
AEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAERAGVQTGDRIIKVN
GTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLLEGEAKVVFLGPQTGSSSVTSP
NSPGQPMGEQPYSPHDRITSPLPIWEENNSVHNQKVHILQKMLSKEQEDLQAMKEEYSRN
PTPKLLKDIQEAKKHIPQLQGQLSKATGGAQDALRLGDGDDGSMVDMDHTPSSSSHELSW
SSSMMSPVLRGFASASPESLCQRDLLSYHSPKSTPRDSFNSCHSPDPEDTPDLDSLSPST
VSSPSRFVSQIIGAEDDYFDSDQEQVNGQCSCFQSMELLKSRPAHLAAFLHHVVSQFDPA
PLLCYLYADLCKQTNSKETRRVFMDFHNFFIDRGANLKVAVPESLSSDLDRRRTELIPEE
LNRQYVQMVQDTQLPDIQRNLEDFRQKRSMGLTLAEGELARLDTERVRDRVALERERACA
ENIITKIEDVLLTTQSTEEEKCTTMQYVILTYMKHLGVKVKEPRGLESKWVRINFLPKIK
KSIKTEKEGGEEKVKRTRFPSILGPPRRPSRVDPMSVGKAMDLNKPRPQKQLSQPCLEHL
EAGRLRASQSSEGSELIHSSPTNATSPTNNNSDGGSRDSEFVGTPNSAFLKLSEGLGDLD
SPEYTPNTHFDYSLSPYSLDQLQEEDRESGILEGTPKAIRRLDGLGSTEVQSEDDQGGTD
SEHDPLNWQQLVGREVLAGLQPHEIKRQEVINELFYTERAHLRMLKVLDNIFYQKLTREG
ILPPADIKNIFTNLEDIVQLHVWISEQMVTIRKRNETSVIDQIGDDLLSWFSRGEEEKIK
QAVGTFCSNQPFALELIKSRQKKDSRFTSFMQEAESNRLCRRLQLKDIIPVEMQRLTKYP
LLLENIAKYTDDTVEKDKVKKAGDCCRNILNHVNQAVKESENKQRLEDYQRRLDLSSLKQ
TENPMISELKNLDLTKKKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDERLILKC
HSKNLSGTADTKHIFSPIIKLNAVLVRSVATDNKSFFVLSMSDNGAQIYELMAQTVSEQR
MWQRQITQRADAMKVKPNSVIPLPQTDGERDGVEIITAGIAQLSKDPDRISSGSNQSIDK
EGCAASGGEMQTSLPDANPFEGLKPEEEEPNREEGLYRDPDLADRLPFRMAVEGLSESDS
VGFSPSRADDALKTLSALKQVLVTQLMSQEDGEGGGRLLRTTSLRTPVDSRARVAVQNGS
GRCTQASHPEDPAQDLVSGDTGFFESPEDYAGYLVLEGYGGSGESSTDDDLQATGKQLSA
SRGCGAGDSGISLRFSSASQAGSISSFSRQVLSHIRNLQTNLNHLKEVEAKYHSLLRQRP
ARSSTDMDDNKDKR
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacagtccagtatcactgataggtttcccaataaagcaaacagaagcagt
agcattctcagtaaagaccacccccctgacaagaaacccaaaagcgataaaccgtcagtc
tccgcttcacatgagtttgaccctacagacgttctggtgcagaagagtgactgtgttcta
gcggagggaaagcccgagtcctgtgggcttgtccagcgatgtgtgatcattcagaaagat
gagaatggctttgggctgacggtgagcggagacaaccctgtgtttgtgcagctcgtcaaa
gaggatggtgctgcagagcgtgcgggtgtacagacaggtgacaggatcatcaaggtgaac
gggaccctagtaacacattcaaaccacgtggaagtcgtaaagctcataaaatcgggctcc
tatgtggccctcaccgtgttggggcgaccccctgggttgccccagatcccccttttggag
ggcgaggctaaggtggtgttcctggggccccagacagggtcgtcctctgtcacctctcca
aactcccctggacagccaatgggggagcaaccatacagcccccatgaccgcatcacctct
cctctaccgatatgggaagagaacaacagcgtacacaaccaaaaggtgcacattctgcag
aagatgttgtccaaagagcaagaagatttgcaggcaatgaaggaggagtacagcaggaat
ccgacgcccaaactactgaaggacatccaggaagccaagaagcacattccacagctgcag
gggcagcttagtaaggccactgggggagcacaggatgccctgcgattgggtgatggagat
gatggaagcatggtagacatggaccacacaccttcctccagtagccatgaactatcatgg
agcagcagtatgatgtcccctgttctccgtggttttgcatctgcctccccggagagcctg
tgccaaagagacttgttgtcctaccacagcccaaagagcacgccccgagacagcttcaac
tcctgccactcccccgacccagaagacactccagacctggactccctgtccccctccact
gttagcagcccctcacgcttcgtctcccagatcatcggagctgaggacgactactttgac
tctgatcaggaacaggtcaatggccagtgcagctgtttccagagcatggagctgctcaag
tccagacctgcccacctggcagcgttcctgcatcacgttgtctcccagtttgaccctgca
ccgctgctctgctacctctacgctgacctgtgcaagcagaccaactccaaagaaaccaga
cgggtgttcatggacttccacaacttcttcatcgaccggggagctaatttaaaagtagct
gttcccgagtccctatcctctgaccttgaccggaggaggacggagctgatccctgaggag
ctgaacagacagtacgtccagatggtgcaggacacacagctccctgacatccagaggaac
ctggaggactttaggcagaagcgcagtatgggcctaaccctggcggagggggagctggcc
cggctggacacggagcgcgtcagagaccgggtagcactggagagagaacgtgcttgtgct
gaaaacatcatcaccaagatagaggatgttctgttgacaactcaatccacagaggaggag
aaatgcactactatgcaatatgtcatcctcacgtacatgaagcaccttggtgtgaaagtc
aaagagccacgtggcctagagtccaaatgggtccgcatcaacttcctccccaagatcaag
aagagcatcaagaccgagaaggagggaggggaggagaaggtgaaacgcaccaggtttccc
agcatcctcgggcctcctcgccggcccagccgcgtcgaccccatgtccgttggcaaggcc
atggacctcaacaagccacggccccagaagcagctgtcccagccctgcctggagcacctg
gaggcgggtcgcttgagggccagccagtccagcgagggctcagagctcatacattcctcc
ccaaccaacgccacctcgccaaccaacaacaactctgacggaggcagcagagactctgag
tttgttgggacccctaactctgccttcctcaaactgagcgagggtcttggagacctggac
agtccagagtacactccaaacacacattttgactacagcctgagcccctatagcctggac
caactacaggaggaggacagggagagtggaattcttgaaggaacacccaaggctatcaga
aggttggatggccttggttctacagaggtgcagagtgaagacgaccaaggaggcactgac
tccgagcacgaccccctcaactggcagcagctggtgggacgagaggtcctggccggactc
cagccccacgagatcaagagacaggaagtcattaacgagctgttctacactgagagggcc
cacctgcggatgctcaaagtgctggacaacatcttctaccagaagctcaccagagagggc
atactgcctcctgccgacatcaagaacatcttcaccaacctggaggacattgttcaactg
catgtttggatatctgagcaaatggtaacaatccggaagaggaacgagacgtccgtaatc
gaccaaataggagacgacttgctgtcctggttcagcaggggcgaggaggagaagatcaag
caggcggtgggcacattctgcagcaaccagccctttgctctggagctcatcaagagcagg
cagaagaaggactcgcgcttcacctccttcatgcaggaggctgagagtaaccgactgtgt
cgaagactccaactgaaggacatcattcccgtggagatgcagaggctcaccaagtaccct
cttctactggagaacatcgccaagtacacagatgacaccgtggagaaagataaggtaaag
aaggcgggcgactgctgcaggaacatcctcaatcatgtcaaccaagcggtgaaggagtct
gaaaacaagcagaggctggaggactaccagaggcggttagacctctcgtctctgaagcag
acagagaaccccatgatttcagagctcaagaacctggacctgaccaagaagaagatggtc
catgagggaccactgtcatggaaggtcaacaaggacaagactattgagctgtacaccctg
ctcctggaggacatcctggtgctgctgcagaagcaggacgagcggctcatcctcaagtgc
cacagcaaaaacctgtctggcaccgccgacaccaagcacatcttcagccccatcatcaag
ctcaacgcggtgctggtgcgctctgtggccacagacaacaagtcgttctttgttctctca
atgtcggacaacggggcccaaatctacgagctgatggcccagaccgtatcagagcagaga
atgtggcagcggcagatcacccagagagcggacgccatgaaagtgaagccgaacagcgtc
atccccttacctcaaacggatggagagagagacggtgtggagatcatcactgcaggcata
gcccaactcagtaaggatccggaccgcatctcctctggaagcaaccagtctatagataaa
gagggctgcgctgcctctggaggcgagatgcagacctctctcccagatgccaacccattt
gaaggactcaagccggaagaggaggagcccaaccgggaggaggggctttacagggacccg
gaccttgcagataggctgcctttccgcatggccgtagaagggctcagcgaatcggacagt
gtgggcttcagtccttcgagagctgatgatgccttaaagacattgtcagcgctgaagcaa
gtccttgtgacccagctcatgtcacaggaggacggcgaggggggcgggcgtcttctcagg
accacgtccctgaggacccccgtggacagccgggcccgggtggcggttcagaacggctca
gggaggtgcacccaggcaagccaccctgaggacccggctcaggacctggtgtctggggac
acaggcttctttgagtcccccgaggattatgcagggtacttggtcttggagggctacggg
ggatcgggggagagcagcacggacgacgacctccaggccacggggaagcagctgagcgcc
tcgcggggctgcggggcaggagattctgggatcagcctaagattctcctctgcctcacag
gcaggcagcatctccagcttcagccgacaggtcctgtcccacatccgcaacctgcagacc
aacctcaaccacctcaaggaggtagaggccaagtatcacagtctactacgccaaaggccg
gccaggtcatcgacagacatggatgataacaaagataagagatag
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