Oncorhynchus mykiss (rainbow trout): 110503712
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Entry
110503712 CDS
T07259
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04137
Mitophagy - animal
omy04140
Autophagy - animal
omy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110503712
04137 Mitophagy - animal
110503712
04148 Efferocytosis
110503712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110503712
Transcription factors [BR:
omy03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
110503712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
110503712
NCBI-ProteinID:
XP_036817183
Ensembl:
ENSOMYG00000037394
UniProt:
A0A8C7TG96
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All DBs
Position
24:10410751..10427770
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AA seq
630 aa
AA seq
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MDTKEEPVAQRSGTDQRKVRSRDAARCRRSQETELFYELAHTLPLPRRVSADLDKAAIMR
VTLSFLRMHHLRSAGDTSEERVTDGDEDTMDGFYPRALAGFIMVMTEEGDMIYLGDSVDK
HLGIQQLELLGQSVYDFVHPCDQEELRDLLVPRPGVFKKKPVQQHTEMTFFLRMKSTLTV
RGRTVNIKSATWKVLHCTGHMRVCSSDEDSSPPAGSFMTVLCEPIPHPSSVEFPLDRSTF
LTRHSMDLRFTHCEGRVAELVGYEPEDLIGKSAYEFHHALDSDHVTKSLHILLSKGQVCT
SQYRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVVEQADVVFSVEQTGCGLK
SDPVSEASEETLCDSDNSSSGELFQQLKENPEDLLQLAPVSGDPIVPLTDFAELSFSLPS
SPDSAPVFPQDLCTPELWTLLSPIFDKPTSSSPTPALIPIEELPIEDEVEKLFAVCPEEV
VQKEDQPEDVEVVDLDMLAPYISMDDDFLLSVQLPGIPDSPSPEPPTATRKRSHEQDEDM
PSQLMSQDKRPRHSVSPIQQELLLSYTLLDCLEDTDSPELELVPHPHRRSQLLTDRDPIL
GEAQGRCDTAALMRDLFLSRPPDPLTSSLT
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaaggaagagcctgttgcacaacggtcgggtacggatcagcggaaggtgcgt
tcccgggatgcggcacgctgccggcggagtcaggagacggagctgttctacgagctggcc
cacaccctgcccctcccccgcagagtctccgccgacctggacaaggccgccatcatgagg
gtgacgctcagcttccttcgcatgcaccacctccgctcagcaggggacacgagtgaggag
cgagtcacagatggggacgaggacacgatggatgggttctacccccgggcactggcaggc
ttcatcatggtgatgaccgaggagggggatatgatttacctgggtgacagcgtcgacaaa
cacctgggcatccaacagctggagctgctgggccagagtgtgtatgactttgtccaccca
tgtgaccaagaggagctacgggatctcctggtgcctaggccaggtgtattcaagaagaaa
ccagtgcagcaacacacagagatgaccttctttcttaggatgaagagcactctgactgtt
agagggcgcactgtcaacataaagtctgccacctggaaggtgctgcactgtacaggccac
atgcgtgtgtgctccagtgacgaggactcgtcaccccctgcaggcagcttcatgacggtg
ctgtgtgagcccatcccccacccgtctagtgtggagttccctctggaccgcagtaccttc
ctcactcgacacagcatggacctgcgcttcacacactgcgagggcagggtggcagagcta
gtgggatacgagccagaagatctgattggcaaatctgcctacgaattccatcatgccctg
gactcggatcatgtgaccaagagcctgcacatccttctgtctaaaggccaggtgtgcacc
agccaataccgttttctggctaagagtgggggcttcgtgtgggcagagacccaggctaca
gtcatctacaacaacaagacctctcaaccagaggctgtggtctgtcttaactttatcctc
agtgtggtggagcaggcagatgtggtgttctcagtagagcagactggctgtgggctgaag
agtgatcctgtctctgaggcctcagaggagactttgtgtgacagtgacaacagcagcagt
ggagagctcttccaacagttgaaggagaacccagaggacctcctccaactggcccctgtc
tccggagaccccatcgtacccctcacagactttgcggagctgtcgttcagccttccatca
agccctgactccgccccagttttcccacaggacctgtgcacccccgagctgtggacgctc
ctctcacccatattcgacaagcccacctcatcatcaccaacaccagcactgatccccatt
gaggagctgccaatagaggatgaggtggagaagttgtttgccgtctgtccagaagaggtc
gtgcagaaggaagaccagcctgaggacgtggaagtggttgatctggacatgctggctccg
tatatctccatggatgatgatttcctgctcagcgtccagctccctgggatccctgacagc
ccgtccccagagccccccactgctaccaggaaacggagccatgagcaggatgaagacatg
ccctcccagctgatgagtcaggacaagagaccgagacactctgtgtcacccatccagcag
gaactgcttctcagctacaccctattggactgcctggaggatacagacagcccagagttg
gagctggtgccacacccccacaggcggagtcaactgctgacggacagagaccccatcctc
ggggaagcccagggacgatgtgacaccgcagccttgatgagggacctcttcttgtcccgc
ccacctgaccccctgacctcctctctgacttga
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