Oncorhynchus mykiss (rainbow trout): 110503848
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Entry
110503848 CDS
T07259
Name
(RefSeq) scavenger receptor class F member 1 isoform X1
KO
K24318
scavenger receptor class F member 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110503848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110503848
Membrane trafficking [BR:
omy04131
]
Endocytosis
Phagocytosis
Scavenger receptors
110503848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
110503848
NCBI-ProteinID:
XP_036817440
Ensembl:
ENSOMYG00000021571
LinkDB
All DBs
Position
24:16093739..16102902
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AA seq
962 aa
AA seq
DB search
MGLFLTGLGLLLCCSLSSPQRLAPSGRNVCQDLRDPSNLVCCTGWRQQGEECTIPVCDDE
QACQQDEVCVYPGVCRCRPGYYGAHCKTRCPPEFWAPDCREMCKCHPHGRCDPITGECTC
LPNRWGPLCQNACRCGRHGHCHPVHGNCTCDEGWWTPTCTKQCQCYPGTSTCDPLTGRCQ
CASGYWGQKCSLRCSCYMSSCQQKTGACECQNRWWGPSCDRHCNCDLEHSECNAVSGECV
CQPGYKGAVCNAPCGPGEYGSGCTLSCGHCKRGQSCSVVDGVCTACEPGWNGTRCDRPCK
RGYHGNDCHEACPRCRNGEPCNPRTGACSRCDPGWTGPRCDKPCFNGTFGDACRFLCSPC
FHGHCDHVTGSCVCGPGFQGQSCNITCPDQLYGFNCSSVCDCGEGTACHPETGACPYSGH
RALIAGLLVPLILVLLGLVCCCCCCGGPTDGKDRVAVGDGGTSVRMKHHVYNVLANVSSA
VPCISVWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTDGSSFDSDEETGEALYCVPPR
EDIPAVAGGEFQEFQHEMSSKCNMFPDPSAFSVSAEDMSLPFGIPRTSSNAKSKRPSVSF
AEGTRFSPKERRGSAQDLTPGAPRTKPKSPWGVLMLSALQAHGGKASEGEETETGERGVD
GCGGGTGPLEEPGSSGEAGDPDVDRYTATPSQAMSTLQVPGAVVGRRRTISNAAVNRKGG
QTPGSTSDGQKAEIDKGMDKVTTVYVTVGKAGVGRPLSKLELPSSEGPIQAMLRRLGSLQ
RHKDQEGGTRSKGKILGAEGITKPPRRKLGARASVWEQGGHSPLGVEGPVGEGVPMRKPS
RRKQHAHHSSPAVMGNTDDGTNTHPPPEGANATITPTRPLSSILKSVPEVAGLEVMGERS
AVRGENGDPGMHTETDSGYLTVGPAGVVTNAVSLSEVIANDGVVASVDDGAILYENVMIM
HS
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgtttctgacgggtctaggattactgctctgctgttccctctcctcccctcag
agactggctccctcagggagaaatgtctgccaggacctcagggatccctccaatcttgtc
tgttgtactggatggaggcaacagggagaggagtgtactatacctgtgtgtgatgatgag
caggcctgccagcaggatgaggtgtgtgtatacccgggcgtctgtcgctgtcggcctggc
tactatggagcccactgcaagacacgctgccctccagagttctgggcaccggactgccgt
gagatgtgcaagtgccaccctcacgggcgatgtgacccgatcacgggcgagtgcacatgc
ctccccaaccgctgggggccactctgccagaacgcctgcagatgtggccgccacgggcac
tgtcaccctgtgcacggcaactgcacctgcgacgagggctggtggacgcccacctgtacc
aagcagtgccagtgctacccaggcacctccacctgcgacccactgaccggcaggtgtcag
tgtgcctcagggtactggggtcagaagtgcagccttcgctgtagctgctacatgtcgtca
tgccaacagaagacgggggcgtgcgagtgccagaacaggtggtggggtccgtcgtgtgat
cgccactgtaactgtgacctggagcacagcgagtgtaatgccgtcagcggggagtgtgta
tgtcagcctgggtacaagggagccgtctgtaatgcgccatgtggacctggggagtatggc
agtgggtgtacactgagctgtggccactgtaaacgaggccagtcgtgctctgtggttgac
ggtgtctgtacggcctgtgagcctgggtggaatggcacacgctgtgaccggccgtgcaag
cggggttaccatggaaatgactgccatgaggcctgcccacgctgcaggaacggtgaacca
tgcaaccccaggacgggggcgtgttcacgatgtgatccaggatggaccggacccagatgt
gacaagccatgctttaacggaacattcggggacgcctgccgcttcctgtgcagcccttgt
ttccatggccactgtgatcacgtgacaggaagttgtgtctgtgggcccgggttccaggga
cagagttgtaacatcacctgtccagaccagctgtatggctttaactgttcctctgtctgt
gactgtggagagggcaccgcctgtcacccagaaacgggggcgtgtccatacagtggtcac
agggctctgatcgctggtctactggtgcctctgatcttggtgctgctgggtctggtctgc
tgctgctgctgctgtggaggacctactgacggcaaagacagggtagcagtgggtgacggt
ggtacctctgtccgtatgaagcatcatgtgtataacgtcctggccaacgtgagctctgct
gtaccctgtatctctgtctggtcctctgggctacccagagtcacagtgtcccaccacgac
cctgagctgacattcaaccacagtttcatagagcctccctcctcaggctgggtgacggac
ggatcctccttcgacagtgatgaggagaccggagaggctctctactgtgtcccccccaga
gaagacatccctgcagtggcgggcggtgagttccaggagttccagcatgagatgagttct
aagtgtaacatgttccccgacccctctgccttcagcgttagtgcagaagacatgtccctc
ccctttggcatcccccgcacctccagcaacgccaagtccaaacgcccctccgtctccttc
gccgaaggcaccaggttcagccccaaggagcgccgaggctctgcccaggacctgactccc
ggggccccccgcaccaaacctaagtccccctggggggtcctgatgctgtcagccctccag
gcccatggagggaaggcctcagagggggaagagacggagacaggtgagaggggtgtggat
ggatgtggaggtgggactggaccattggaagaaccaggatccagtggtgaagcaggggac
cctgatgtggacaggtacacggccaccccgtcccaagccatgtctaccctgcaggtgcct
ggagcagtggtaggaagaagacgcaccatatccaacgctgctgttaacagaaagggtggg
caaacaccagggtccacatccgatggccagaaggcagagatcgataaagggatggacaag
gtgaccacagtgtacgtgacagtgggtaaggcgggggtggggaggcccctgtctaaacta
gagctccccagctcggagggcccgatacaggccatgctacgcaggctaggcagcctccag
agacataaagaccaggaggggggaactaggtccaagggtaagatcctgggagcggaggga
atcaccaagccacccaggaggaagctaggggccagggccagtgtgtgggagcaggggggt
cactcacccttgggggtggagggtcctgtaggggaaggcgtacctatgaggaaacccagt
aggaggaaacagcacgcccaccacagctcgcctgctgtcatgggaaacactgacgatggc
actaacactcaccccccaccagagggcgccaatgccaccattacgcctacgaggcccctg
tcctctattttgaaaagtgtgccagaggtcgctgggttagaagtcatgggtgaaaggtca
gcggtgaggggagagaatggtgaccctgggatgcatactgagactgacagtggatatcta
acagtcgggccagctggagttgtaaccaacgctgttagtctgagtgaagtcatcgccaat
gacggagtagtggccagtgtggacgatggagctatcctatatgagaatgtgatgattatg
cattcctaa
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