Oncorhynchus mykiss (rainbow trout): 110503906
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Entry
110503906 CDS
T07259
Name
(RefSeq) transcription elongation factor SPT6 isoform X2
KO
K11292
transcription elongation factor SPT6
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110503906
03036 Chromosome and associated proteins [BR:
omy03036
]
110503906
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
110503906
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
110503906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
HHH_3
Spt6_S1
SPT6_acidic
S1
S1_RRP5
HHH_9
SH2
Tex_N
Tex_YqgF
oligo_HPY
Motif
Other DBs
NCBI-GeneID:
110503906
NCBI-ProteinID:
XP_021438212
Ensembl:
ENSOMYG00000014654
LinkDB
All DBs
Position
24:18005926..18037320
Genome browser
AA seq
1729 aa
AA seq
DB search
MDFIESEAEESEEEFGSTAYEEEEQENTEDQDEDGNLSGLIDDGVDEGEGEEEEEKEGKK
DKEGDSDSGEEIGHHKRKRSFDDRLDDDDIDLIEENLGVKVKRQKFRRLRDMSDDEDEEG
DDDVREAHEKDMIADEIFMGTGADEGEALDVPLHPGEDEQEDDEESDIDDFIVDDDGQPL
KKPKWRKKLPGYTDAALQEAQEIFGGDFDFAEFDTEAYEDAEEEEDADEESWDRPKKQTK
KRVGRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSTCVKPAEDDELEQEAEWI
YRNAFSTLTISMQENADYLDRGPATTFSRKGPSTIQKIKEALNFMRNQHFEVPFIAFYRK
EYVEPELNINDLWKVWQWDEKWTQLKTRKQNLRRLFQKMQGYQFEQISADPDKPLADGIR
PLDTSDLERLKDVQSSDELGDVYNHFLLYYGRDIPKMQNAARSSKKKLKKIKEVDEDGNE
QEVVEEEEEEEEEHPKGPDLKLASRRDMYSICQGAGLDGLAKKFGLTPEQFGENLRDSYQ
RHETEQFPAEPMELAKDYICSQFSTAEAVLEGTRYMVAMQIAREPLVRHVLRQTFQERAK
INIKPTKKGKKDVDEAHYGFSFKYLKNKPVKELNGDQFLKMLQAEEEGLLTINVCIDLIG
VKGYGGDQAYYEEIKQFYYRDEFSHQVQEWNRQRTLAIERSLKQFLYPQMAKELKNKLIA
EAKENIIKACSRKLYNWLKVAPYRPDQQVEEEEDEELMSEAQGKGIRVLGVAFSSSRDTP
VFCALVNGDGEVGDFLRLPYFLKRRNAWREDEREKKIHDIETLKKFLNSKKPHIIAIAGE
NRDAQMVIEDIKRTASELEQESSFPTIGVELVDNELAMLYMNSKKSEADFRDYPPLLRQA
VSVARKIQDPLVEYAQVCSSDDDILCLKLHPLQEHVVKEDLLNALYCEFINRVNEVGVDV
NRAMAHPYTQSLLQYVCGLGPRKGSHLLRILKQNNTRLENRTQLVTMCHMGPKVFINCAG
FIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEIL
ENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRSTYRGPNTEEIFNLL
TKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVW
NHFDSGSCPGQAIGVRCRMDNGVTGFIPTKFLSDKVVKHPEERVKVGMTVHCRIMKIDIE
KLSVDLTCRTSDLSDKNNDWKLPKDTYYDFDTETEDVKQEEEAKKKQQRTTYIKRVIAHP
SFHNINFKQAEKMMESMDQGDVIIRPSSKGENHLTVTWKVADNIYQHIDVREEGKENAFS
LGHTLWINTEEFEDLDEITARYVQPMAAFARDLLGHKYFQECNGGDRKKMEEVLVKSKKE
KPTFIPYYVSACRELPGKFLLGYQPRAKPRVEFVTVTPEGFRYRGQIFPTVNGLFRWFKD
HFQDPVAGITPSSSSRTRTPASVNATPANINIADLTRAVNALPQNMTSQMFSAIAAVTGQ
GQNPNTTPAGWASSQYGYTGDSSGGGGSSSAYHVFATPAQQPIATPLLTPSYSYTTPTPS
QQQTITTPQYPSSTPQSSHGSQGHGHRPSSSTPTSSSSSRHHRTPTPKATSHTAVDWGKM
AEQWLQEKEAERKKTRPRMTPRPSPSPMIESTPMSLAGDATPLLDEMDR
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atggatttcatcgagagcgaagcagaggagtctgaggaggaatttgggagtacagcatat
gaggaagaggaacaggagaataccgaggaccaagatgaggatggaaacctcagtggtctg
attgatgatggtgtggatgaaggggaaggagaggaagaggaggagaaggaagggaagaaa
gataaagaaggagatagtgactctggggaggaaattggacaccataagaggaagagaagc
tttgacgaccgcttggatgatgatgatattgatctcattgaggagaatttgggagtgaaa
gtgaaaaggcaaaagttccgtcgtttgcgagacatgtcggacgatgaggatgaagaggga
gatgatgacgtcagggaggcccatgagaaggacatgatagcggatgagatcttcatgggg
acgggagcggatgagggcgaggcattggatgtgcctttgcatcccggggaggatgagcag
gaggacgatgaagagtctgatatcgatgactttattgtggatgatgacggacagcccttg
aagaaacccaagtggaggaagaagctgccaggatatacagatgcagcacttcaggaggcc
caggagatattcggaggggactttgactttgccgagtttgacactgaagcctatgaagat
gcagaggaggaggaggatgcagatgaagagtcatgggaccggcccaagaagcagaccaag
aagagagtgggccgacgcagtatctttgagatctatgagcccagtgagctggagagcagt
cacatgacggaccaggacaatgagatccgttccactgacatgccagagaggttccagttg
cgctccacttgtgtgaagcctgcagaggatgatgagttggaacaggaggctgagtggatc
tataggaatgccttctctactctcaccatctccatgcaggagaacgcagactatttggac
agaggtccagccactacattcagcagaaaaggccccagcaccatccagaagattaaagag
gctttgaatttcatgagaaaccaacactttgaggttccgttcatagcgttctacaggaaa
gagtatgtggaacctgaactcaatatcaatgatctgtggaaagtttggcagtgggatgag
aagtggacccagctgaaaacccgcaaacagaacctgagacgcctgttccagaagatgcag
ggataccagtttgaacagatctcagcagacccagataagccactggctgatggcattcga
ccattagacacttcagatttagagcggctgaaggatgtccagtctagtgatgaactgggc
gacgtctacaaccatttcctgctgtactatggccgggatatcccaaagatgcagaatgca
gccaggtccagcaagaagaagctgaagaagatcaaagaagtggatgaagatggtaatgag
caggaagtagtagaggaggaggaagaggaagaagaggagcacccgaaggggccggacctg
aagcttgcatctcgcagggatatgtacagcatctgccagggtgcaggactggatggccta
gccaagaagtttggtctgactccagagcagtttggagagaacctacgtgacagttaccag
cgtcacgagacggagcagtttcctgctgagccaatggagctggctaaggactacatctgc
agccagtttagcacagcggaggcagtactggagggaactcgctacatggtcgccatgcag
atcgctcgggagcctctagtcagacatgtgctccgacagacattccaggagagagccaag
atcaacatcaaacccaccaagaagggaaagaaggatgtggatgaggcccattatggcttc
tcctttaaatacctgaaaaacaagcctgtaaaggagctgaatggagaccagttcctcaag
atgttgcaggcagaggaagagggcctgctcaccattaacgtctgtattgacctgattgga
gtgaaggggtacggaggtgaccaggcatactatgaagagatcaagcagttttactacaga
gatgagttcagccaccaggttcaggagtggaacagacagcgcactctggccatcgagcgc
tccctcaaacagttcctttacccgcagatggcgaaagagctgaagaacaaacttattgca
gaagcaaaggagaacatcatcaaggcctgcagcaggaagctgtataactggctgaaggtg
gcgccctatcggcccgaccaacaagtggaggaggaggaggacgaggagctcatgtctgag
gcccagggcaaagggatccgcgtgctgggagtggccttctcatccagcagagacacccca
gtgttctgcgccctggtgaatggtgacggagaagtgggggatttcctcaggcttccttac
ttcctgaagaggaggaacgcatggagggaggatgaacgagagaaaaagatccacgatatt
gaaaccctgaagaagtttctgaacagcaagaagcctcacatcatcgctatagctggggag
aacagggatgcccagatggtgattgaggacattaaacgcactgccagtgagctggagcag
gagtcctctttccccaccattggggtggagctggttgacaatgaactggccatgctctac
atgaacagcaagaagtcagaggcagatttccgggactacccccctctcctgagacaggct
gtgtctgtggccaggaagatccaggaccccctggtggagtatgctcaggtgtgcagcagt
gacgatgacatcctctgcctcaagttgcaccctttgcaggagcatgtagtgaaggaggac
ctgctgaatgctctgtactgtgagttcatcaaccgggtgaatgaagtgggtgtggatgtg
aaccgggccatggcccacccctacacccagagcctgttgcagtacgtctgtggcctgggg
cccaggaagggatcccacctgctcaggatcctgaagcaaaataacactcgtctggagaac
cgcactcagctggtcaccatgtgtcacatgggccccaaggtcttcatcaactgtgctggt
ttcataaagattgacacagcttctctgggcgatagtactgactcctatattgaggttctg
gacgggtcacgggtgcacccagagacctatgagtgggccaggaagatggccgtggacgct
ctggagtacgatgagtcagcggaggacgccaacccggccggagcactggaggagatcctg
gaaaacccagagcggctcaaagacctggacttggatgccttcgctgaggagctggaaaga
cagggttatggtaacaagggcatcaccctgtatgacatccgtgctgagctgagctgcagg
tacaaagacctgaggtccacctacagaggacctaacacagaggagatcttcaacctgctc
accaaggagacaccagagaccttctacatcggtaaacttattaccagtgtggtgacaggc
attgctcaccggcgcccccagggggagagttatgaccaggccataaggaatgatgagaca
ggtctgtggcagtgtcctttctgtcagcaggacaactttcctgagctcagtgaggtgtgg
aatcattttgacagtggctcctgccctggccaagctattggggtccgctgtcgcatggac
aatggagtcaccggctttatccctaccaagttcctcagtgacaaagtggtcaagcatcct
gaagaaagggttaaggtgggcatgacagtgcactgcaggatcatgaagattgacattgag
aagctcagtgtggatctgacctgtcggacgtcagacctgtcggataagaacaacgactgg
aagcttcccaaggacacctactacgactttgacactgagacagaggatgtgaagcaggag
gaggaggccaagaagaaacagcagagaacaacctacattaagagggtgatagcccaccca
tcgttccataacatcaacttcaagcaggcagagaagatgatggagtccatggaccaggga
gatgtgatcatcaggcccagtagtaagggagagaaccacctgactgttacttggaaggtt
gctgataacatctaccagcacattgacgtacgagaggagggcaaggagaacgccttcagc
ctgggacataccctgtggatcaacactgaggaatttgaagatctggatgaaatcacagcc
agatacgttcaaccaatggctgcgtttgctcgcgatctgctcggtcacaagtattttcaa
gaatgcaatggtggagaccgaaagaaaatggaggaggtcttggtgaaaagcaagaaggag
aagcctacattcatcccctactatgtgtctgcctgtagagagctgccagggaagtttctg
ctcggttaccagccccgcgcaaagccaagggttgagtttgtgactgtcacgcctgagggg
ttcagatacagaggacagatttttcccacagtcaatggacttttccgatggttcaaagac
catttccaggatccagtggcagggattactcccagcagcagcagtagaacacgaacccca
gcctctgtcaatgccacgccagccaatattaacattgcagatctgactcgtgcagtgaac
gccctccctcagaacatgacctctcagatgttcagtgccattgccgctgtaacgggccag
ggccagaaccccaacaccacacctgccggttgggcatccagccagtacggctacactggg
gacagcagcggtggggggggcagcagcagcgcctatcacgtgtttgccacaccagctcag
cagcccattgctactccccttctgacgccaagctattcatacaccacccccacccctagc
cagcagcagactatcaccacaccccaataccccagcagcactccccagtcctcacacggg
tcacaaggacatggacaccgcccttcctcctccacaccaacatcatcatcctcttcccgc
caccacaggacaccaacaccaaaggcaacttcccacacagcagtggactggggcaagatg
gccgagcagtggctccaggagaaagaggcagagcgcaagaagacgaggcccagaatgacc
ccacgaccttctcccagccccatgatcgagagcacgcccatgtccctcgctggagacgcc
acaccactgctggatgagatggatcgctag
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integrated database retrieval system
