Oncorhynchus mykiss (rainbow trout): 110504016
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Entry
110504016 CDS
T07259
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04142
Lysosome
omy04144
Endocytosis
omy05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
110504016
04142 Lysosome
110504016
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
110504016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110504016
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omy04147
]
110504016
Membrane trafficking [BR:
omy04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
110504016
Exosome [BR:
omy04147
]
Exosomal proteins
Proteins found in most exosomes
110504016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
110504016
NCBI-ProteinID:
XP_021438465
Ensembl:
ENSOMYG00000035945
LinkDB
All DBs
Position
24:complement(21735107..21755619)
Genome browser
AA seq
1687 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPAKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWMFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPAEGPLQTRLLEMNLVHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVKGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHDGCEEPATHNALAKIYIDSNNNPERFLRENTF
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLETNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VGQAAAQSGNWEDLVKFLQMARKKSRESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDERMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMM
SHPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFF
MKTKQLSLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRASIDAYDNFDNITLAQGL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDVELAEELLAWFLE
EDKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDK
LDASESLRKQEEQNTESQPIVYGTPQLMLTSGPGQAVPPQPGYGGYGYPAAPAGYGQPPQ
PGFGYGM
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaatactacctatccgattccaggagcacttgcagctccagaacctggggatc
aacccagctaacattggattcagcaccctgactatggagtctgataagttcatctgtata
agagagaaggtgggcgagcaggcacaggtggtcatcattgatatggccgaccccaacact
cccatccgtagacccatctctgcagatagcgccatcatgaaccctgctagcaaagttatt
gccctcaaagacgctgcaaaaaccctccagattttcaacattgagatgaagagcaagatg
aaggctcacaccatgactgatgatgtcactttctggaagtggatctccctcaacactgta
gcacttgtcacagacaatgctgtctaccattggagcatggagggagactcccagccagcc
aaagtctttgaccgacactccagccttgcaggctgtcaaatcatcaactaccgcaccgac
gccaaacagaaatggctgcttctcattgggatttcagcacagcaaaaccgtgtggtggga
gccatgcagctgtactctgtggacaggaaggtgtcccagcccattgagggccacgccgca
ggctttgcccagttcaaaatggagggcaacacagaggaatccacactgttctgcttcgct
gtccgagggcaagctggaggaaagttacacataattgaagtggggaccccaccaacaggc
aatcagccatttccaaagaaggcagtggatgtgttcttccctcctgaggcccagaatgac
ttccctgtagctatgcagatcagctctaagcaggatgttgtctttctcatcaccaaatat
ggctacatccacctgtatgacctggagactggcacctgtatttacatgaacaggatcagc
ggggagaccatctttgttacagccccacatgaaccaaccgctggcatcattggagtcaac
aggaaaggacaggtgttgtctgtgtgtgtggaggaggagaacatcatcccctacatcacc
aacgtgctccagaacccagacctggcccttcgtatggctgtgcgcaacaacctggctggg
gccgaggagctgttcgcccgcaagttcaacaccctgttcgctgcagggaactactctgag
gctgccaaggtggccgccaatgctcccaagggtatcctgcgtaccccagacaccatccgt
aaattccagagtgtgccggcccagccgggccagacctctcccctgctgcagtactttggc
atcctgctggaccagggccagctcaacaagtttgagtccctggagctgtgcaggcccgtc
ttacagcagggacgcaagcagctgctggagaaatggctgaaagaggacaagctggagtgt
tctgaggagctgggggacctggtgaagtcagtggatcccactctggccctcagcgtctac
ctcagggccaacgtgcccaacaaggtcatccagtgcttcgctgagaccggacagttccag
aaaattgtcctctatgccaaaaaggtgggctacaccccagactggatgttcctgctgagg
aacgtgatgagaatcagtccagaacaaggcctgcagttctcccagatgctggtgcaggac
gaggagccgctggctgacatcacacagatcgttgacgtgtttatggagtataacctgatc
cagcagtgtacctccttcctcctggatgccctgaagaacaacaggcctgctgaggggcct
ctgcagacacgcctgctggagatgaatctggtccacgccccacaggtggctgatgccatc
ctgggcaaccagatgttcacccactacgaccgtgcccacgttgcccagctgtgtgagaag
gctggcctgctgcagagggctctggagcattacaccgacctgtacgacatcaaacgggct
gtggtgcacacacacctgctcaaccctgagtggctggtgaacttttttggctccctatca
gtggaggactctctggagtgtcttcgggccatgctgtcggccaacatccgtcagaacctg
cagatctgtgtccaggtggcctctaagtaccacgagcagctctccaccaactccctcacc
gagctctttgagtccttcaagagcttcgaaggtctgttctacttcctgggttccatcgtt
aacttcagccaggacccagaggtccacttcaagtacatccaggccgcctgtaagacggga
cagatcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtc
aagaacttcctcaaggaagctaagctgactgatcagctccccctgatcatcgtgtgtgac
cgcttcgactttgtccacgacctggtcctctacttgtaccgcaacaccctgcagaaatac
attgagatctatgtgcagaaggtgaaccccagccgtctgccggtggtgattggagggctg
ctggatgtggactgtgctgaggatgtgattaagaacctgatcctggtggtgaaaggacag
ttctccactgatgaactggtggctgaggtggagaagaggaacagactgaaactgctccta
ccctggctggaggcccgtatccacgatggctgtgaggagccagctacccacaatgccctg
gccaagatctacatcgacagcaacaacaacccagagcgcttcctgcgtgagaacaccttc
tacgacagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcttgcgtg
gcctacgagagaggacagtgtgatcaggagctcattaatgtgtgcaatgagaactccctg
ttcaagagtctgtctcgctacctggttcgccgtaaagaccctgagctgtgggccagtgtg
ctgctggagactaacccattcagaagacccctcatcgaccaggttgttcagactgccctg
tctgagacccaggacccagaggaggtttcagtcacagtcaaggccttcatgactgcagac
ctccccaacgaactcattgagctgctggagaagatcgttctggataactcagtcttcagt
gaacacagaaaccttcagaacctgctgattctaacagccatcaaggcagaccgtacccgt
gtgatggagtacatcaaccgcctggacaactacgacgcccctgacatcgcaaacatcgcc
atcagcaacgagctctttgaggaggcattcgccatcttcaggaagtttgacgtcaacacc
tctgccgtgcaggttctgattgagcacattgggaacctggaccgggcctatgagtttgct
gagcgctgcaatgagcctccagtgtggagccagctggccaaggctcagctccagaagggt
ctggtgaaggaggccatcgactcctacatcaaggctgacgacccctctgcctacatggag
gtgggccaagctgcagcccagagcggtaactgggaggacctagtgaagttccttcagatg
gcccgtaagaagtcccgtgagtcctacgtggagaccgagctcatcttcgccctggccaag
accaaccgcctggctgaactggaggagttcatcaatggacccaacaacgcccacatccaa
caggtgggtgacaggtgttatgatgagaggatgtatgatgcggctaagctgctctacaac
aatgtgtccaacttcgggcggctagcgtccaccctggtccacctgggagagtatcaggcc
gccgtggacggagcccgcaaggccaacagcacccgcacctggaaagaggtgtgctttgcc
tgtgtggatgggaaagagttccgcctggcccagatgtgtggcctgcacatcgttgtccat
gctgatgaactggaggagctcatcaattactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctgggcctggagcgggctcacatgggcatgttcaccgag
ctggccatcctctactccaagttcaaaccccagaagatgagggagcatctggagctcttc
tggtccagagtcaacattccaaaggtcctgagggctgcagagcaggcccacctgtgggcg
gagctggtcttcctctatgacaagtatgaggagtttgacaatgccatcatcaccatgatg
agccacccctccgatgcctggaaggaaggacagttcaaagacatcgtcaccaaggtggcc
aatgtggagttatactacaaggctatccagttctacctggagttcaaaccattgttactg
aacgacctgctcatagtgttatcaccacgactcgaccacacccgcgctgtcaacttcttc
atgaagaccaagcagctgtcactggtcaagccatacctgcggtcagtgcagaaccacaac
aacaaaggtgtcaacgaagcacttaacaacctcttcatcacagaggaagactatgcggcc
ctgcgtgcctccatcgatgcctacgacaattttgacaacatcaccctggcccagggcctg
gagaagcacgagctgattgagttcaggaggatcgctgcctacctcttcaaaggcaacaac
cgctggaagcagagcgtggaactctgcaagaaggacaaactctacaaggatgccatgcag
tatgcgtctgagtcaaaagacgtggagctggctgaggagttgttggcctggttcctggag
gaggataagaaggagtgctttgccgcctgcctcttcacctgctacgacctgctgaggcct
gacgtggtgctggagacggcctggaggcacaacatcatggacttctccatgccctacttc
atccaggtcatgagggagtacctctccaaggttgatgcgattaaggaaaaggtcgacaag
cttgacgcctcagagtcactaaggaaacaggaggagcagaacaccgagtcccagcccatt
gtttatggcacgccccagctcatgctcacttcaggccctggtcaggctgtgcccccccag
cctggctacggaggttacggctacccagcagcacccgctggttacggccagcctccccag
cctggctttggctacggcatgtga
DBGET
integrated database retrieval system
