Oncorhynchus mykiss (rainbow trout): 110504448
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Entry
110504448 CDS
T07259
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
110504448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110504448
03036 Chromosome and associated proteins [BR:
omy03036
]
110504448
Transcription factors [BR:
omy03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
110504448
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
110504448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Motif
Other DBs
NCBI-GeneID:
110504448
NCBI-ProteinID:
XP_036826183
LinkDB
All DBs
Position
31:complement(753126..809258)
Genome browser
AA seq
2406 aa
AA seq
DB search
MSITSAESTDQMMEQEVGQLPITDQMMEEEEGQLPITDQMMEEEEEEEPGSSAETERPSS
SHTKRKPAVTAKHTGGNESDTSDESGQEDGASDNPSDDTTLQERIDCTACGQQVNHFQRH
SVFEHPMLHVLLCKSCYKYYTSDDINKDEDGMDEQCRWCAEGGNLICCDYCHNAFCKKCI
LRNLGRKELSMITDDDSKWSCYICRPQPLSDIASNCSNILTKLESFWRTGRKKERKEVKG
HSKGKGHHHHGKAVVNGKEHSDGSGTLTFSYKTLKVLKELVKRTKKLIETTTGLNSTFIQ
QAEEEQGAGGGGSGTRHLKAFRSVLADMKKAHAALEEDLESQFTSQDQGMQNGDAVSNTD
GHDGHDQIDNIVEDGQEAEEDKMADTEDGEELEEDGGLSEDAEMEGSPAPAPQDHSDTET
DSQAKDQTAVEGEEEEEEEEEDGEEEEGDRDKDIVSVGPAVPDELFQMVESLADSAGLTP
GNDAMETTAASQSESPAAGSNRKSLETHEEKAMPKVKNPIVKLTPVPVVTTRTSRSMSKD
KDGGKEKERSKDGGREKSKEEVEEGGGSEEDSRRSSRTKTTPLRKSPAGKNTMAESSPEN
SDSEGKSPSRQKNRTKGSSEKECEEEEEQQRNASSKVTADPSKQEVDSDEVLDILLQTAA
AEHSSDEDAHQDADGNQGNRSFKRCLFKLSKKDGEEEENDKVKTDKKLAAKRKLKADDSD
NSESDSDEDAKKKKKKKSSTASAKKTSKKKGSGGSSNSDSDLEKEMNGLSKLATGKRRSS
RVKKERDEKENKGGDRRRSYELKRKARSRGAKQQDSSSDDEEEGGGSGEESGDQQKIKPI
VEETLVAGRGTFHQSSGLTPGNDAMETTAASQSESPAAGSNRKSLETHKEKAMPKVKNPI
VKLTPVPVVTTRTSRSMSKDKDGGKEKERSKDGGREKSKEEVEEGGGSEEDSRRSSRTKT
TPLRKSPAGKNTMAESSPENSDSEGKSPSRLKSRTKGSSEKECEKEEEEQQRNASSKVTA
DPSKQEVDSDEVLDILLQTAAAEHSSDEDAHQDADGNQGNRSFKRCLFKLSKKDGEEEEN
DKVKTDKKLAAKRKLKADDSDNSESDSDEDAKKKKKSSTASAKKTSKKKGSDGSSNSDSD
LEKEMKGLSKLATGKRRSSRVTKEREEKENKGGDRRRSYELKRKARSRGAKQQDSSSDDE
EEEEGGGSGEESGDQQKIKPIVEETLVAGRGTFHQSSGDEGNHDASQMDDDEEDDDDEPE
NRIAKKILAQIKANYSSGAEESSDEDREEKEQKKGKGGEEQEEDDDDEDEGGSGSDVDVG
RCHRLLRHKLTLYEVESGEEKEKPASKGKKKETKRTRRKVDSDDSADPDFKESASSSESG
VSEEISEKESSSSEESESEKEGSRHRRTTRSSVKKKKERSYAQKKKRRRIKAQDSSSDDK
SGSGEDVSGKEDGDTPRGQRKKIRKILKYDELRTETRDALKEEEERRRRIAEREQLREKL
RETLHVPPDQVLVVEEATAVACPITTKLVLDEDEETKEPMVQVHRNLVTKLKPHQVDGDE
GNHDASQMDDDEEDDDDEPENRIAKKMLAQIKANYSSGAEESSDEDREEKEQKKGKGGEE
QEEDDDDDDEGGSGSDVDVKTSVGRRHQLTLYEVESGEAKEKPASKGKKKETKRTRRKVD
SDDSADSDFKESASSSESGVSEEISEKESSSEEESESEKEGSRHRRTTRSSVKKKKKERS
YAQTKKRRLIKAQDSSSDDKSGSGEDVSGKEDGDTPRGQRKKIRKILKYDELRTETRDAL
KEEEERRRRIAEREQLREKLRETLYVPPDQVLVVEEASAVACPITTKLVLDEDEETKEPM
VQVHRNLVTKLKPHQVDGDEGNHDASQMADEEDDDDEPENRIAKKMLAQIKANYSSGAEE
SSDEDGEEKEQKKGKGGEEQEEDDDDDDEGGSGSDVDVKTSVGRRHQLTLYEVESGEEKE
KPASKGKKKETKRTRRKVDSDDSADSDFKESASSSESGVSEEISEKESWSEEEPESEKEG
SRHRRTTRSSVKKKKKERSYAQTKKRRLIKAQDSSSDDKSGSGEDVSGKEDGDTPRGQRK
KIRKILKYDELRTETRDALKEEEERRRRIAEREQLREKLGETLYVPPDQVLVVEEASAVA
CPITTKLVLDEDEETKEPMVQVHRNLVTKLKPHQVDGVQFMWDCCCESVKKTNKNSGSGC
ILAHCMGLGKTLQVVTQLHTLLLCEKLDFSTALIVCPLNTVLNWLNEFEKWQYGFKDKES
LKVTELATVKRPQERASALQQWQEDGGIMIIGYEMYRNLTQGRNIKSKKLKETFQKTLVD
PGPDFVICDEGHILKNEASAISKAMNSIKTRRRVVLTGTPLQNNLIECMSVTSCYIQTAG
LQGIRK
NT seq
7221 nt
NT seq
+upstream
nt +downstream
nt
atgagtataacctcagctgaatctacagaccaaatgatggagcaggaagtaggtcaactt
ccgattacagaccagatgatggaggaggaggaaggtcaacttccgattacagaccagatg
atggaggaggaggaggaggaggagcctgggagctcagcagagactgagagaccctcctct
tctcacaccaagaggaagcctgctgttacagccaagcacaccggagggaatgagtctgac
acctcggacgagagtggacaggaagatggcgcctctgacaacccttcagatgataccact
ttgcaggagaggatagactgcaccgcctgtggacagcaggtcaaccacttccagcgccac
tcagtgtttgagcacccgatgctccatgtgctcctctgcaagtcgtgttataagtattac
accagcgatgacatcaataaagacgaggacggcatggacgaacagtgcaggtggtgtgct
gaaggtggcaacctgatctgctgtgactactgccacaacgccttctgtaagaagtgcatc
ctgcgtaacctggggcgcaaggagctgtccatgatcaccgacgacgacagtaaatggtcc
tgctacatctgcaggcctcagcctctctcagacatcgcctccaactgctccaacatcttg
accaagctggagagcttctggcgcacgggacgcaagaaagagaggaaggaggtgaaaggg
cacagtaagggtaaaggtcaccaccaccatggtaaagctgtggtgaacggtaaggaacat
tcagacgggtcagggaccctcaccttctcctataagaccctgaaggtcctcaaggagctg
gtgaagaggaccaagaagctgattgagacgaccacagggctcaacagcaccttcatccag
caggctgaggaggagcagggagcaggaggaggtggcagcgggaccagacacctcaaggcc
ttcaggtctgttctggctgatatgaagaaggcccatgctgccctagaggaggacttggag
tcacagttcacttcccaggaccaggggatgcagaacggggatgctgtttccaacaccgac
ggccatgatggccacgatcagattgacaacatagttgaggatggacaggaggcagaagag
gataaaatggccgacactgaggatggggaggagctagaggaggatgggggcttgtcagag
gacgcagagatggaggggagccccgcccccgcgcctcaggaccactcagacacagagaca
gacagccaggccaaagaccagacagcagtggagggggaggaggaagaagaagaggaggag
gaggatggagaggaggaggagggtgaccgggataaagacattgtgtccgtcgggccggcc
gtccctgacgagctcttccaaatggtagagagtctggcggactccgcagggttaacgcct
ggcaacgacgccatggaaaccaccgctgctagccaatccgagagccccgccgccggctca
aacaggaagtcacttgaaacccatgaggagaaggccatgcccaaggtgaagaacccgatc
gtgaagctgacgcctgttccagtggttaccacacgcacctccaggtctatgagcaaggat
aaggatggagggaaggagaaggagaggagtaaggatggagggagggagaagagtaaggag
gaggtggaggaaggtgggggctctgaggaggacagccgccgctccagccgcacaaagacc
acacccctcaggaagtcaccggccgggaagaacacgatggccgaatcctctccggagaac
agcgactcagagggcaagagtcccagcaggcagaagaatagaaccaaaggcagctcggag
aaggaatgtgaggaggaggaggagcagcagagaaatgcctcatccaaggtgaccgctgac
ccttctaaacaagaagtggactctgacgaggttctggacatcctgctccagactgcagcg
gcagaacacagctcggacgaggatgcgcatcaggacgccgatggtaaccagggcaacagg
agcttcaaaaggtgcctgttcaaactcagcaagaaagatggagaggaggaggagaatgac
aaggtgaagactgacaagaagctggcggccaaacgcaaactgaaagctgacgattcagac
aactcagagtccgactcagacgaagacgcgaagaagaagaagaagaagaagtcctccaca
gcttctgccaaaaagacatccaagaagaagggctcgggcggctcctctaactccgactcg
gacctggagaaggagatgaatggactcagcaaactggcgacggggaaacggaggagcagc
cgtgtgaagaaggaaagagatgagaaggagaacaagggcggagatcggaggcggtcgtac
gaactcaaacgcaaagccagaagtagaggagccaagcagcaagattcatcgtctgatgac
gaggaggagggaggagggtctggagaggagagtggagaccagcagaagattaaacccatc
gtggaggagacgttggtagcagggaggggaaccttccaccagtcctcagggttaaccccc
ggcaacgacgccatggaaaccaccgctgctagccaatccgagagccccgccgccggctca
aacaggaagtcacttgaaacccataaggagaaggccatgcccaaggtgaagaacccgatc
gtgaagctgacgcctgttccagtggttaccacacgcacctccaggtctatgagcaaggat
aaggatggagggaaggagaaggagaggagtaaggatggagggagagagaagagtaaggag
gaggtggaggaaggtgggggctctgaggaggacagccgccgctccagccgcacaaagacc
acacccctcaggaagtcaccggccgggaagaacacgatggccgaatcctctccggagaac
agcgactcagagggcaagagtcccagcaggctgaagagtagaaccaaaggcagctcggag
aaggaatgtgagaaggaggaggaggagcagcagagaaatgcctcctccaaggtgaccgct
gacccttctaaacaagaagtggactctgacgaggttctggacatcctgctccagactgca
gcggcagaacacagctcggacgaggatgcgcatcaggacgccgatggtaaccagggcaac
aggagcttcaaaaggtgcctgttcaaactcagcaagaaagatggagaggaggaggagaat
gacaaggtgaagactgacaagaagctggcggccaaacgcaaactgaaagctgacgattca
gacaactcagagtccgactcagacgaagacgcgaagaagaagaagaagtcctccacagct
tctgccaaaaagacatccaagaagaagggctcggacggctcctctaactccgactctgac
ctggagaaggagatgaagggactcagcaaactggcgacggggaaacggaggagcagccgt
gtgacgaaggaaagagaggagaaggagaacaagggcggagatcggagacggtcgtacgaa
ctcaaacgcaaagccagaagtagaggagccaagcagcaagattcatcgtctgatgacgag
gaggaggaggagggaggagggtctggagaggagagtggagaccagcagaagattaaaccc
atcgtggaggagacgttggtagcagggaggggaaccttccaccagtcctcaggagatgaa
ggtaaccatgacgcttcccagatggacgatgatgaggaggacgatgatgatgagcctgag
aacagaattgccaagaagatactggcccagatcaaggctaactactcttcaggagcagag
gagagctctgacgaggacagagaagagaaggaacagaagaaggggaagggaggagaggag
caggaggaggacgacgacgatgaggatgaagggggctctggctctgatgtggacgtgggg
cgttgccaccgactgctccgccacaaactgacactgtacgaagtggagtcaggagaggag
aaggagaaaccagccagcaaggggaagaagaaggagaccaagaggaccagacggaaagtg
gatagtgatgactcagcagacccagactttaaggagtcagctagcagcagtgaatcagga
gttagtgaggagatcagtgagaaggaatcgtcgtcgtcagaggagtcggagtctgagaag
gaaggcagtagacacaggaggaccacgcgctcctccgtgaagaagaagaaggagaggagc
tacgcccagaagaagaaacggcgccgcatcaaggcccaggattcttcatctgacgacaag
agcgggtcaggagaggatgtctcgggtaaggaggatggagacactcctagaggacagagg
aagaagatcagaaaaatcctcaagtacgatgagctgaggacggaaacgagggatgccctg
aaggaggaggaggagaggaggagacgcatcgctgagagggagcagctcagggagaaactc
agagagactctacatgtccctcccgaccaggtactcgtggtggaggaggcgaccgccgtg
gcttgtccaataacaaccaagctggtgctggatgaagacgaggagaccaaggagcccatg
gtgcaggttcaccgcaatctggtcactaagctcaaaccacaccaggtcgacggagatgaa
ggtaaccatgacgcttcccagatggacgatgatgaggaggacgatgatgatgagcctgag
aacagaattgccaagaagatgctggcccagatcaaggctaactactcttcaggagcagag
gagagctctgacgaggacagagaagagaaggaacagaagaaggggaagggaggagaggag
caggaggaggacgacgatgatgatgatgaagggggctctggctctgatgtggacgtgaag
acgagtgtggggcgtcgccaccaactgacgctgtacgaagtggagtcgggagaggcgaag
gagaaaccagccagcaaagggaagaagaaggagaccaagaggaccagacggaaagtggat
agtgatgactcagcagactcagactttaaggaatcagctagcagcagtgagtcaggagtt
agtgaggagatcagtgagaaggaatcgtcgtcagaggaggagtcggagtctgagaaggaa
ggcagtagacacaggaggaccacgcgctcctccgtgaagaagaagaagaaggagaggagc
tacgcccagacgaagaaacggcgcctcatcaaggcccaggattcttcatccgacgacaag
agcgggtcaggagaggatgtctcgggtaaggaggatggagacactcctagaggacagagg
aagaagatcagaaaaatcctcaagtacgatgagctgaggacggaaacgagggatgccctg
aaggaggaggaggagaggaggagacgcatcgctgagagggagcagctcagggagaaactc
agagagactctatatgtccctcccgaccaggtactcgtggtggaggaggcgtccgccgtg
gcttgtccaatcacaaccaagctggtgctggatgaagacgaggagaccaaggagcccatg
gtgcaggttcaccgcaatctggtcactaagctcaaaccacaccaggtcgacggagatgaa
ggtaaccatgacgcttcccagatggctgatgaggaggacgatgatgatgagcctgagaac
agaattgccaagaagatgctggcccagatcaaggctaactactcttcaggagcagaggag
agctctgacgaggacggagaagagaaggaacagaagaaggggaagggaggagaggagcag
gaggaggacgacgacgatgatgatgaagggggctctggctctgatgtggacgtgaagacg
agtgtggggcgtcgccaccaactgacgctgtacgaagtggagtcaggagaggagaaggag
aaaccagccagcaaggggaagaagaaggagaccaagaggaccagacggaaagtggatagt
gatgactcagcagactcagactttaaggaatcagctagcagcagtgagtcaggagttagt
gaggagatcagtgagaaggaatcgtggtcagaggaggagccggagtctgagaaggaaggc
agtagacacaggaggaccacgcgctcctccgtgaagaagaagaagaaggagaggagctac
gcccagacgaagaaacggcgcctcatcaaggcccaggattcttcatccgacgacaagagt
gggtcaggagaggacgtctcgggtaaggaggatggagacactcctagaggacagaggaag
aagatcagaaaaatcctcaagtacgatgagctgaggacggaaacgagggatgccctgaag
gaggaggaggagaggaggagacgcatcgctgagagggagcagctcagggagaaactcgga
gagactctatatgtccctcccgaccaggtactcgtggtggaggaggcgtccgccgtggct
tgtccaataacaaccaagctggtgctggatgaagatgaggagaccaaggagcccatggtg
caggttcaccgcaatctggtcactaagctcaaaccacaccaggtcgacggggtccagttc
atgtgggactgctgttgtgagtcggtgaagaaaaccaacaagaactctggttctggatgt
atcctggctcactgtatgggcctgggaaaaacactgcaggtggtaacccaactccacaca
ctactgctgtgtgaaaagttagacttctccacggctctgatcgtctgtcctctcaacacc
gttctcaactggctcaatgagtttgagaagtggcagtacggcttcaaggacaaggagagt
ttaaaggtgacggagctggccacggtgaagcgtcctcaggagagagcgtctgctctgcag
cagtggcaggaggatggaggaatcatgatcattggctatgagatgtaccgtaacctcaca
cagggtagaaacatcaagagcaagaaactcaaagagaccttccagaagaccctggttgac
ccaggcccagactttgtgatctgtgatgagggccacatcttgaagaacgaggcgtcggcc
atctctaaagccatgaactccatcaagacccgacggagagtggtgctcactggcacaccg
ttgcagaacaacctcatagagtgtatgtctgttacttcctgttatatccagaccgctggc
ctacagggcattcggaaataa
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integrated database retrieval system
