Oncorhynchus mykiss (rainbow trout): 110504735
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Entry
110504735 CDS
T07259
Name
(RefSeq) probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
omy01002
]
110504735
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omy04121
]
110504735
Enzymes [BR:
omy01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
110504735
Peptidases and inhibitors [BR:
omy01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
110504735
Ubiquitin system [BR:
omy04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
110504735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
Vps23_core
DUF2014
Motif
Other DBs
NCBI-GeneID:
110504735
NCBI-ProteinID:
XP_036831068
Ensembl:
ENSOMYG00000022106
LinkDB
All DBs
Position
3:74031194..74104010
Genome browser
AA seq
2644 aa
AA seq
DB search
MTATTRGSPVGGNDSQSGQVQAPDAQSQSQPPLPQNQTLSPNSSNENSPVSPPDEQGQGD
GPPQLEEEVEEPAFPHTDLTKLDDMINRPRWVVPVLPKGELEVLLEAAIELSKKELDVKC
EACQRFFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLEL
LAMAFNPHCKFHIYNGTRPSETVPAGAQLADDELFARPPDPRSPKVGSEFKGWLVDLINK
FGTLNGFQTLHDRFISGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLE
NLTDEELKKEAKNEAKNDALSMIIKSLKNLASKVPGQEETVKNLEIFRLKMILRLLQISS
FNGKMNALNEVNKVISSVSYYTHRHGNPEEEEWLTAERMAEWIQQNHILSIVLRDSLHQP
QYVEKLEKILRFVIKEKALTMQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDH
LFDCFKASWTNASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQ
ALSAHIKILDYSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNL
RKKMPINIQTNLVGQTQRSPHVFYRHDLINQLQHNHALVTLVAENLSAYMETMRQFSKAE
QAEFDPQTVRVGSRYSHVQEVQERLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCD
REACFKWYSKLMGDEPDLDPDINKDFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGK
LVAKRRAYMMDDLELIGLDYLWRVVIQGSDDIASRAIDLLKEIYTNLGPKLQVNQVEIHE
DFIQSCFDRLKASYDTLCVLEGDKDSINCARQEAIRMVRVLTVLKEYINECDSDYHEERT
ILPMSRAFRGKHITLIVRFPNQGRQVDDLDIWSHTNDTIGSVRRGILTRIKANATHTKIE
LFIGGEVVDPADDRKLIGQLNLKDKTLITAKLTQVSANMPSSPDSSSDSSTGSPGNHGNH
FSEGPNPEVESCLPGVIMSLHLRYVSFLWQVADLGCSPNMPLLRDGARVLMKLMPPDNST
VESLRGVCLDHAKLGENGLSPTLDSRFFGPSPSQVLYLIEVVYALLMPASSTLGEDASDF
QYNFLKSGGLPLVLSMLTRNNFLPSADMETRRGAYLNALKIGKLLLTAVGFGHVKAVAEA
CQPNAEGTTPVSPINQATHDQALVLQSALQNLPNPASECMLRNVAIRLAQQISDENFFQA
SKYIPEICVIRAVQKIAWASGCGTIQLVFSSNEEISKIYEKTNVVKEPDGEDEQVCCEAL
EVMTLCFALLPTALDTLSKEKAWQTFIIDLLLHCHSKSVRQMAQEQFFLMATRCCMGHRP
LLFFITLLFTVMGSTAKERAKHAGDYFTLLRHLLNYAYNSNINLPNAEVLLNNEIDWLKK
IRDEVKRTGETGVEETILEGHIGVTKELLAFQTPEKKYYIGCENGGANLIKELMDDFIFP
ASNVYLQYMKSGEFPMEQAIPVCSSPASINAGFELLVALSVSCVRNLKQIVNMLTDMYYL
GCEALTEWEYLPPVGPRPTKGFVGLKNAGATCYMNSVIQQLYMIPPIRDGILAIEGTGTD
VDDDMSGDEKQESESNADPRDEVFSYNHQFDDKPSLSKSEDRKEYNIGVLRHLQVIFGHL
ASSRLQYYVPRGFWKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVL
GGSFADQKICQGCPHRYECEESFTTLNVDIRNHQNLLDSMEQYVKGDLLEGANAYHCEKC
NKKVDTVKRLLIKKLPPVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAK
LEGDDVNPENQVIQQNEPSDPEPPGSSKYRLVGVLVHSGQASGGHYYSYITQRNVGVADG
ERNRWYKFDDGDVTECKMDDEEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILF
YERMDSLDKDSELVKYIQELTISSSSNNKPSHQVKMPNVIECSVRKQNVQFMHNRMQYSL
EYFQFVKKLLTCNSVYLNPPPGQDHLLPDAEEMAMISVQLAARFLFSTGFHTKKVVRGAA
SDWYDALCVLLRHSKNVRYWFAHNILFAYANRFSEYLLECPSAEVRGAFAKLIVFIAHFS
LQDGPCPAPTASPAGASTQSQACDNLRLSDHLLRAVLNLLRREVSEHGRHLQQYFNLFVM
YANLGLAEKTQLLKLSVPATFMLVALDEGPGPPIKYQYAELGKLYTVVSQLVRCCDVAAR
MQSSINGNPPLPNPYGDANQTTPVMPVQQLVGEILFVRTSYVKKIIEDCSNSEETVKLLR
FSCWENPQFSSTVLSELLWQVAYSYTYELRPYLDLLLQILLIEDSWQTHRIHNVLKGIPD
DRDGLFDTIQRSKNHYQKRAYQCIKCMVALFSSCSVAYQILQSNGDLKRKWTWAVEWLGD
ELERRPYTGNPQYTYNNWSPPVQSNETSNGYFLERSHSARMTLAKACELCPEECHLTKPG
EAMSEEEAAMRKSSSPQQLLPGDGTGPQQHTEPDDQEASEDQDTSPPEDTSLYPHSSPGT
TTQFQQNNHGQPYTGPAAQLMNNPQHPGPAPSTPGPEPGPRAQENWESTEEVPSTSTAPT
SPKE
NT seq
7935 nt
NT seq
+upstream
nt +downstream
nt
atgacggccaccacgcgtggctctccggtggggggcaacgacagccagtcgggccaggtt
caggcacccgatgcccagagtcagagtcagcccccgctgccacagaaccagacgttgtcc
cctaactcgtccaatgagaactctccagtgagccccccggatgagcagggtcagggggat
ggacccccacagctggaggaggaggtggaggagccagccttccctcacacagacctgaca
aagctggatgacatgatcaacagaccccgctgggtggttccagttctgccaaagggagag
ttggaggttcttctagaagctgctatagagcttagtaaaaaggaacttgatgtgaagtgt
gaggcatgccagaggtttttcagggacggcctgaccatctctttcaccaagattctcaca
gacgaggccgtcagcgggtggaagttcgagatacataggtgtatcatcaacaacacccac
cggctggtggagctgtgtgtggccaagctctctcaggactggttccccttgctggagctg
ctggccatggccttcaacccccactgcaagtttcacatctacaatggcacgaggccctct
gagacggtgcccgccggggcgcagctggcagacgacgagctctttgcccgcccccctgac
cctcgctctccaaaggtagggtctgaattcaagggctggttggtggatttaattaacaaa
ttcggcacgttaaacgggtttcaaacgctgcacgatcgcttcataagtggccaagcactg
aacgtccagatcatcgctgcccttatcaagcctttcgggcagtgttacgagtttctcacg
ttgcacacggtgaagaagtacttcctgcccgtcatcgagatggttcctcagttcctggag
aatctgacagacgaggagctgaagaaggaagccaagaacgaagccaaaaatgatgccctg
tccatgatcatcaagtccctgaagaacctggcctccaaggtgcctgggcaggaggagacc
gtcaagaacttagagatttttaggttaaaaatgattcttaggttattgcaaatttcctct
tttaatggcaaaatgaatgcactaaacgaagtaaacaaagtaatctccagtgtgtcctat
tacacacatcggcatggcaaccccgaggaggaggagtggctaactgcagaacgcatggcg
gagtggatccagcagaaccacatcctgtccattgtgctgagggacagcctccaccagcct
cagtacgtagagaaactagagaagatactgcgcttcgtcatcaaggagaaagctcttacc
atgcaggacctggacaacatctgggctgcacaggctggtaaacacgaggccattgtgaag
aacgtacacgaccttctggccaagctggcctgggacttctctcctgagcagctcgaccac
ctctttgactgcttcaaggcgagttggacgaacgccagtaagaagcaacgtgagaagctg
ttggaactgatccgtcgcctggcggaggacgacaaggatggcgtgatggcccacaaggtg
ctgaacctgttgtggaacctggctcacagcgatgacgtgcctgtagacatcatggaccag
gcactcagtgctcacatcaagatactggactacagttgctctcaggatagagacacgcag
aagatccagtggatcgatcgcttcatagaagagttgcgcaccaatgacaaatgggtgatt
cctgcactaaagcagatccgagagatctgtagcctgttcggagaggctcctcagaatctc
agaaagaaaatgcctattaacatacaaacgaacttagtgggtcagacccagaggagtcct
catgtgttctatcgtcatgacctgattaaccagctgcaacacaaccatgccctggtcacg
ctggtggctgagaacctctctgcctacatggagaccatgaggcagttctctaaagccgag
caggcggagtttgacccccagacggtgagggtagggagccgctacagccacgtacaggaa
gtccaggagagactcaacttcctgaggttcctgctgaaggatggccagttgtggctctgt
gctcctcaggccaaacagatctggaagtgcctggctgagaacgcagtctttctttgtgac
cgagaggcctgcttcaaatggtactccaagctgatgggagatgagccagacctggacccg
gacatcaacaaggacttctttgagaacaacgttctgcagctggacccgtctctgctcacg
gagaacggcatgaagtgctttgagaggttcttcaaggccgtcaactgcagggagggcaag
ctggtggccaaacgtagggcctacatgatggacgacctggaactcataggcctggactac
ctctggagggtcgtaattcaagggagtgatgacatcgccagtcgagccatagacctgctg
aaagagatctacaccaacctcggaccaaaactacaagtcaatcaggtagagatccacgag
gatttcatccagtcatgtttcgaccgtctgaaggcgtcgtacgatacgctctgtgttctg
gaaggggacaaggacagcatcaactgtgcccggcaggaggccatccgcatggtccgcgtg
ctcactgtgctcaaggagtacatcaacgagtgtgacagcgactaccatgaggagaggacc
atactgcccatgtccagggcgtttcgggggaagcacatcacgttgatcgtgcgtttccct
aaccaaggccgtcaggtggatgacctggacatctggtctcacaccaacgacaccattggc
tcagtgcgccgcggtatcctcacacgcatcaaggccaacgccacgcacaccaagatagag
ctcttcattggcggggaggttgttgacccagccgacgacaggaagctgattggccagctc
aacctgaaagacaaaacgttgatcacagccaagctgacccaggtgagtgccaacatgcct
tccagcccagacagctcctcggactcttccactggctcaccgggtaaccatggcaaccac
ttcagcgaagggcccaaccccgaggtggagagctgcctccctggagtgatcatgtctctc
cacctgcgctacgtctccttcctgtggcaggtagcagacctgggctgtagccccaacatg
cctctgctacgagacggagccagagtactgatgaagctgatgcctccagataacagtacc
gtggagagcctgcgtggtgtatgtctggaccatgccaagctgggagagaacggcctcagc
ccaacactggactcacgcttctttggcccctcgccatcacaagtcctctacctcatagag
gtggtgtatgccctgctcatgccagccagctccacattgggtgaggacgccagcgacttc
cagtacaacttcctgaagagtggcgggctaccgctggtactgagcatgctcacgcggaac
aacttcctgccgtcggccgacatggagacgcggcgaggggcgtacctcaacgctcttaag
atcggcaaactgctgctcaccgctgttgggttcggacacgtcaaagctgtggccgaggcc
tgccagcccaacgctgaggggaccacacccgtctcaccgattaaccaggccactcacgac
caggctttggtcctccagagtgccctgcagaacctccccaaccctgcctctgagtgcatg
ctccgcaatgtagctatacgcctggcccaacagatctctgacgagaacttcttccaggcg
tcgaagtatatccctgagatctgtgtgatccgggcggtgcagaagatagcatgggcttca
ggctgtggcaccatacagttggtcttcagctccaatgaagagatcagcaaaatctatgag
aagacgaacgtggttaaggagccggacggggaggatgagcaggtgtgctgtgaggccctg
gaggtcatgaccctgtgttttgccctgctgcccaccgctctggacacactcagtaaggag
aaggcctggcagaccttcatcatagacctgctactgcactgtcacagcaagtcagttcgt
cagatggcccaggagcagttcttccttatggccaccaggtgctgcatgggccaccgaccc
ctcctcttcttcatcaccctcctcttcactgtgatggggagcacagctaaagagcgggcc
aagcatgctggggactacttcaccctgctcaggcacctcctgaactacgcctacaacagc
aacatcaacctgcccaacgcagaggtgttgctcaacaacgagatcgactggctgaagaag
atcagggatgaggtgaagaggacaggggagacgggcgttgaggagaccatcctggaggga
cacatcggagttaccaaggagttgctggccttccagacaccagagaagaagtactacatt
ggctgtgagaatggaggggccaacctcatcaaggagttgatggacgacttcatcttccca
gcgtctaacgtgtacctgcagtacatgaagagtggggagttccctatggagcaggccatc
cctgtctgtagcagccccgcttccatcaacgcaggcttcgagctgctggtggctctgtca
gtgagctgtgtccggaacctcaagcagatcgtcaacatgctcactgacatgtactaccta
ggttgtgaggctctgacagagtgggagtatctccctccggtggggccgcggcccactaaa
ggctttgtggggctgaagaacgccggggccacctgctacatgaactcagtcatccagcag
ctttacatgatccctcccatccgcgacggaatcctggccatcgagggcaccggcaccgac
gtggacgatgacatgtccggcgacgagaagcaggagagcgagagtaacgcagacccgcgg
gatgaggtgtttagctataaccaccagtttgacgacaagccgtcgctcagtaagtcggag
gacaggaaggagtacaacattggggtgctgcgccacctacaggtcatctttggtcacctg
gcctcctccagactgcagtactacgtaccccggggcttctggaaacagttcaggttatgg
ggtgagccggtgaacctgcgagagcagcacgatgccctggagttcttcaactccctagtg
gacagtctggacgaggctctgaaggccctgggtcacccggccatgcttagcaaggtgctg
gggggatccttcgccgaccagaagatctgccaggggtgcccacatagatatgagtgtgag
gagtcgttcaccactctgaatgtagacatcaggaaccaccagaacctgttggactctatg
gagcagtatgttaaaggagacctgctggagggagccaacgcataccactgtgagaagtgc
aacaagaaggtggacacagtgaagcgtctgctgatcaagaagcttcccccagtgctggcc
atccagctgaagaggtttgactacgactgggagagggagtgtgccatcaagttcaacgac
tactttgagttccccagggagctggacatggagccctacactgtagccggggtggccaag
ctggagggggacgacgtcaacccagagaaccaggtgatccagcagaacgagccctctgat
ccagagcccccgggcagctccaagtaccgcctggtgggggtgctggtccactcaggccag
gccagcggcggacactactactcctacatcacgcagaggaacgtgggcgtggccgacggc
gagcggaaccgctggtataagtttgacgacggcgacgtgactgagtgcaagatggacgac
gaggaggagatgaagaaccagtgcttcggaggggagtacatgggagaggtgtttgaccac
atgatgaagaggatgtcctaccggcgccagaaacgctggtggaatgcctacatcctcttc
tacgaacgcatggactcattggacaaggacagtgagctggtcaagtacatccaggagctg
accatctcgtcctcgtccaacaacaagccgtcgcaccaggtcaagatgcccaacgtgatc
gagtgcagcgtgcgcaagcagaacgtgcagttcatgcacaaccgtatgcaatacagcctg
gagtatttccagtttgttaagaaacttctgacctgtaacagtgtctatttaaaccctccg
ccaggacaagaccatctactgcccgatgcagaagagatggctatgataagtgttcagctg
gctgctaggttcctcttcagcactggtttccacaccaagaaagtagtgaggggggccgcc
agtgactggtatgatgcgctgtgtgtcctgctgagacacagtaagaatgtacgctactgg
tttgcacacaacatcctgtttgcctatgccaaccgcttctccgagtacctgctggagtgc
cccagcgctgaggtccggggcgcgttcgccaaactcatcgtcttcatcgcacacttctcc
cttcaagacggaccctgccccgcgcccacagcatcccctgccggcgcctccacccaatca
caggcgtgtgataacctgcgtctcagtgaccatctgttgagggctgtgttgaacctcctc
aggagagaggtgtcagagcatggccgacacctgcagcagtacttcaacctcttcgtcatg
tatgccaacctagggctggcagagaagactcagttgttgaagctgagtgtcccagctacc
ttcatgctggtggctctagacgagggacccggtcctcccatcaagtaccagtatgcagag
ctggggaaactctacaccgtggtctcccagctggtgcgctgctgtgatgtggccgcacgc
atgcagtcatccatcaatggtaacccccctctccctaacccgtacggcgatgccaaccag
accaccccggtgatgcctgtgcagcagctggtgggagagatcctttttgttaggaccagc
tacgtgaagaagatcatcgaggactgcagcaactcagaggagacagtcaagctgctgcgt
ttcagctgctgggaaaacccccagttctcctctactgtgctatcagagctgctctggcag
gtggcgtactcctacacctacgagctgaggccttacctggacctgctgctgcagatcctg
ctcatcgaggactcctggcagacacacaggatccacaacgtgttgaagggtataccagac
gacagggacggcctgtttgacaccatccagcgctccaagaaccactaccagaaacgggcc
taccagtgtatcaagtgcatggtggccctgttcagcagctgctctgttgcctaccagatc
ctacagagtaacggggacctgaagcgtaagtggacctgggcggtggagtggctgggggat
gagctggagaggagaccctacacagggaaccctcagtacacctacaacaactggtctcca
cccgtccagagcaacgagacctccaacgggtacttcctggagcgctcgcactctgcacgt
atgaccctggccaaggcctgcgaactttgccccgaggagtgtcacttaacgaagcccggt
gaggccatgtctgaagaagaagctgccatgcggaaatcgtcctcgccacagcagcttttg
ccaggggacgggacaggaccacagcaacacactgagcccgatgaccaggaagcctctgaa
gatcaggacacctcccctccagaggacacctccctctacccacactcatctcctgggacg
accacacagtttcagcagaacaaccacggacagccatacacaggccccgctgcccagctc
atgaacaacccccagcaccctggccctgccccttctaccccaggccctgagcccggccca
agagcacaagagaactgggagagcactgaggaggtcccctccacctccacggcccctacc
tcgcctaaggagtaa
DBGET
integrated database retrieval system
