KEGG   Oncorhynchus mykiss (rainbow trout): 110505068
Entry
110505068         CDS       T07259                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:omy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:omy03041]
    110505068
Spliceosome [BR:omy03041]
 Complex B
  Other components
   Complex B specific factors
    110505068
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_EML ANAPC4_WD40 WD40_Gbeta Beta-prop_WDR90_POC16_2nd LisH_TPL Beta-prop_WDR75_1st Beta-prop_VPS8 NBCH_WD40 Beta-prop_ACSF4 Beta-prop_RIG_2nd Ge1_WD40 Beta-prop_TEP1_C Beta-prop_Nup120_160 WDR90_beta-prop_4th CFAP251_N Beta-prop_NOL10_N Beta-prop_Aladin Beta-prop_Vps41 Beta-prop_WDR41 WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_DCAF4 TRM82_WD Beta-prop_HPS5 ASA1 DSE1_N Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_BBS7 Beta-prop_EIPR1 Beta-prop_WDR75_2nd Beta-prop_DCAF12 WD40_RFWD3 Beta-prop_IP5PC_F PAC11 LisH_UCP007778 DUF7165 LisH_PAC1 PROPPIN LisH zf_topless LisH_SSDP LisH_WDR26
Other DBs
NCBI-GeneID: 110505068
NCBI-ProteinID: XP_021439699
Ensembl: ENSOMYG00000043822
UniProt: A0A060W1V8
LinkDB
Position
31:complement(33803844..33816208)
AA seq 513 aa
MSLEVESADVIRLIMQYLKENNLHRTLTTLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRVAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEERFPTQLTRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCLSFCKDSSQLLSASFDQTIRVHGLKSGKSLKEFRGHSSFVNEATFTPD
GHHIISASSDGTVKVWNMKTTECTNTFKSLGTSAGTDITVNNVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLISTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctttggaggtggaatcggcagacgtgattcgtctgataatgcagtacctgaaagag
aacaatctgcaccgaacactgaccacccttcaggaagagaccaccgtgtctttgaacact
gtggacagtatcgagagtttcgtggcagacatcaacagtggccattgggacactgtgctg
caagctatccagtcactcaagctccctgacaagactttgatagacttgtatgaacaggtg
gtgttggagctcattgagttgagagagttgggcgcagccaggtctttgctaaggcaaaca
gaccccatgatcatgctgaagcagacccaaccagagaggtacattcacctggagaacctg
ctggctcgctcctactttgaccccagagaggcctacccagacggaagcagtaaggaaaag
aggcgtgtggccatcgcccaggccctggccggggaggtcagcgtggtgcccccctcccgt
ctcatggccctgctgggacagtccctaaaatggcagcagcaccagggtctcctgccccca
ggtatgaccattgacctgttcaggggcaaggcagctgtgaaggacgtggaggaggagcgc
ttccccacacagctcaccagacacataaagtttgggcagaagtcccacgtggagtgttcc
cgcttctctcctgatggtcagtacttggtcacgggatcagttgatggtttcatcgaggtc
tggaacttcaccacgggcaaaatcagaaaggatctgaagtaccaggcgcaggataacttc
atgatgatggacgatgcagtgttatgtatgtgcttcagcagggacacagagatgctggcc
acaggggcccaggacggcaaaataaaggtgtggaagatccagagtggccagtgcttgcga
cgctttgagcgcgcccacagtaaaggtgtcacctgcctcagtttctgcaaggacagcagc
cagctgctcagtgcctccttcgaccagaccattagggttcacgggctgaagtcgggcaag
tcgctgaaagagttccgaggacactcttcgtttgttaatgaagcaacattcacacctgac
ggacaccatatcatcagcgcttcctctgacggcactgtaaaggtgtggaacatgaaaacc
acagaatgcaccaacaccttcaagtcccttggcacctcggccggcaccgacatcacagtc
aacaacgtcatcctgctgcccaagaacccagagcactttgtggtgtgcaaccgctccaac
accgtagtcatcatgaacatgcagggccagattgtgaggagttttagctctggtaagagg
gagggaggagactttgtctgctgcacgctgtctccccgtggcgagtggatctactgtgta
ggagaggattttgtgctctactgcttcagcacggtcactggcaagctggagagaaccctg
acagtccatgagaaggatgtgattggcatcgcccaccacccccaccagaacctcatctcc
acgtacagcgaggacggcctactcaagctctggaaaccctga

DBGET integrated database retrieval system