Oncorhynchus mykiss (rainbow trout): 110505072
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Entry
110505072 CDS
T07259
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013
Nucleocytoplasmic transport
omy03015
mRNA surveillance pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110505072
09122 Translation
03013 Nucleocytoplasmic transport
110505072
03015 mRNA surveillance pathway
110505072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110505072
03041 Spliceosome [BR:
omy03041
]
110505072
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
110505072
Spliceosome [BR:
omy03041
]
Common components
Common spliceosomal components
Cap binding complex
110505072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
AAA_11
AAA_13
Vfa1
RRF
GBP_C
EMC3_TMCO1
DUF1281_C
Afi1
FapA
tRNA_bind_2
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
110505072
NCBI-ProteinID:
XP_021439702
Ensembl:
ENSOMYG00000043993
UniProt:
A0A060W5M8
LinkDB
All DBs
Position
31:complement(34131207..34138567)
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AA seq
796 aa
AA seq
DB search
MSRRRHSDGDDGGQSHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKANL
YTEALYLVRFLCDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYVVLSSLPWV
GKELYEKKDVEMDRLLNQIDGYLKRRLKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPAHMPDCQYPMPRVIFRMFDYTDAPEG
PVMPGSHSVERFVIEDNLHNIIKSHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPCPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMMYMRLDTMNTTCIDRLLNWFSHH
LSNFQFRWSWDDWTDCLALDADKPKPKFVKEVLEKCMRLSYHQRIVDIVPPTFSALIPAD
PIFFYKYQDEANSALPGYAVAITVGNAIKNRASNEEILTVLKDVPNPNQEDDDDEGEGFN
PLKIEVFLQTLLHLAAKSFSHSFSALAKFHEILKVLTDCDEGKLHILRVVYEVWRNHPQM
ISVLVDKLIRTQIVDCAAVANWLFSPNMAHEFTRFYVWEILHSTIRKMNKHVQKIQKELE
EAKDKLERQQHKKQKDSGDEEDMEKNSEDEDGQLEEQIERLQEKVESAQSEQKNLFLVIF
QRFIMMLTEHLVRCETGSVDFSTPWYKNCIERLQQIFLMHHVTIQQYMGTLENLLFTAEL
DHHILAVYQQFCALQL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaagacggcacagtgacggagatgatggaggccaatctcacaaaagaaggaga
acgtctgagcccattgagattgaggatcgcctggaatcactgatatgtcgagtgggagaa
aagagtacctcttccctggaaagcaatttggaaggtcttgcaggtgtcttggaagccgac
ctccccaattacaaaaacaaaatcctccgcattttgtgtgctgtggctcgacttctaccc
gagaagctgacagtgtacacaacattagtgggccttctcaatgccaggaactacaacttt
ggcggggagtttgtggaggccatgatccgacaactcaaagagaccttgaaggccaacctg
tacaccgaagcgctttacctagtgcgcttcctctgtgacctggtgaactgccacgtgatc
gctgccccctccatggtggccatgtttgagaactttgttagtgtcactcaggaggaagat
gtgccacaggtgcgctcggactggtttgtctatgttgtactctccagtctcccctgggtt
gggaaggaactctatgagaagaaggacgtggagatggacaggctcctaaaccagattgac
ggttacctcaagaggcgactgaagactcatgtccccatgcttcaggtttggacagcagag
aagccacacccacaagaggagtacctggactgcctgtgggctcagatccagaagctgaag
aaggaccgctggcaggagcgccacatcctgcggccgtacattgcctttgacagcgtgctg
tgtgaggccctgcagcacaacctgccacccttcaccccgcctgcccacatgcccgactgc
cagtaccccatgccccgcgtcatcttccgcatgttcgactacaccgatgcccctgagggt
cccgtcatgccaggcagccactcagtggagaggtttgtgattgaggataaccttcacaac
atcatcaagtcccactggaaagagaggaagacctgtgctgcgcagttgctcagctatcca
gggaaaaacaagatcccactcaactatcacattgtggaggtgatctttggagagctcttc
cagttgccctgtcccccccacatcgacgtcatgtacaccacactgctcatcgagctctgc
aagctgcagccaggctccctgcctcaagttttggcccaagccacagagatgatgtacatg
agactggacactatgaacactacttgcatagaccgactcctcaactggttctcccaccat
ttgagcaactttcagttccgatggagctgggacgactggacggactgtttagcgctggat
gcagacaagcccaagcccaagtttgtcaaggaggttctggagaaatgcatgaggctctcc
tatcatcagcggatagtggacatcgtcccgcccactttctcagccctcatcccagccgac
cccatcttcttttacaaataccaagatgaggccaacagtgcgctgccaggctatgccgtg
gccataacggtgggcaacgccatcaagaaccgggcctccaatgaggagatcctcaccgtg
ctcaaagacgtgccaaaccccaaccaggaagatgacgatgatgagggtgagggcttcaac
cccctaaagatagaggtgttcctgcagacactcctccatctggctgccaagtccttcagc
cactctttcagtgccctggccaagttccatgagattctgaaggtcctgacggactgtgac
gagggcaagctgcacatcctccgggtggtctacgaggtctggcggaaccacccacaaatg
atctctgtgctggtggacaagttgatccgtacacagattgtggattgtgcagctgtagcc
aactggctcttctctccaaacatggctcatgaatttaccaggttttacgtgtgggagatt
ctgcactccaccatccgtaagatgaacaaacacgtccagaagattcagaaagagctggag
gaggccaaggataagctggagaggcaacagcataagaagcagaaggacagtggcgatgag
gaggacatggagaagaacagtgaagatgaggacggtcagctggaggagcagatcgagcgt
ctgcaggagaaggtggagtcggcccagagtgagcagaagaacctcttcctggtcatcttc
cagcgcttcatcatgatgctgacggagcacctggtgcgctgcgagacaggcagtgtggac
ttcagcacgccctggtacaagaactgcatcgagaggctgcagcagatcttcctcatgcat
catgtgaccatccagcagtacatggggaccctggagaacctgctgttcaccgccgagctt
gaccaccacatcctagctgtttaccagcagttctgtgccctgcagctctga
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integrated database retrieval system
