Oncorhynchus mykiss (rainbow trout): 110505329
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Entry
110505329 CDS
T07259
Name
(RefSeq) homeobox-containing protein 1 isoform X4
KO
K24885
homeobox-containing protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110505329
Transcription factors [BR:
omy03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
110505329
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
AbiJ_NTD3
HTH_3
HTH_31
HTH_26
DUF494
Motif
Other DBs
NCBI-GeneID:
110505329
NCBI-ProteinID:
XP_021440179
Ensembl:
ENSOMYG00000032119
LinkDB
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Position
25:complement(10769841..10799354)
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AA seq
550 aa
AA seq
DB search
MSQFTDEPRFTIEQIDLLQRLRRTGMTKPEILHALDTLDRLDRQHGHKFGRRPQTQPQPV
GQGPTSNSNANMTSSSSSNNVVASSSTSTAATQTGYQANGSGGSGLSPSPSNNYDMSPPP
PAVVSAPVALAAVAQNGCGGVGGGGEIVAMTNGKLSPPRFPISVSAVSGGVTGRGYGFEA
SEEELDVDDKVEQLMRRDSAIIKEEIKVFLGNRRISQAVVAQVTGISQSRISHWLLQQGS
DLSEQKKRAFYRWYQLEKTTPGATLTMRPAPTSLEDVVEWRQTPPPVSSTPGSFRLRRGS
RFTWRKECLAVMESYFNDNQYPDEAKREEIANACNAVIQKPGKKLSDLEKVTSLKVYNWF
ANRRKEIKRRANIEEAAILESHGIDVQSPGGHSNGDDIEGNDFPDQGCEAPLFEKRAVTR
PFSRLDLSSPTQVPTLLPSWLAAWPGSGRGGLAAQRASSLIGRSLLSGWGLAQGAGMEGS
RLTGVSWSPPSPQDDDSTNHSNALEHQDPIALAVEMAAVNHSILALATQAGGGLALGGTG
SDIKTEVLDD
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagttcaccgatgagcctcgcttcaccatcgagcagattgacctgctccaacgg
ctgaggaggacggggatgaccaagccagagatcctccacgccctggataccctggacaga
ctggaccgccagcacggacacaagtttggacgccgcccccagacgcagccccagcctgtc
ggtcagggaccgacgtccaatagcaatgctaatatgacgtcgtcttcctcgtccaataat
gttgtggcgtcctcgtcgacgtccacggccgccacacagactggttaccaggcgaatggg
agtggcgggagtggtctgtcgccgtcacctagcaacaactatgatatgtcgccgccccct
ccggcggttgtatctgcccctgttgctttggcagcggtggctcagaacgggtgtggtggg
gttggtggcggcggagagattgttgccatgacgaacggaaagctgtctccaccacggttt
cctatcagtgttagtgcggttagtggtggcgtgacggggagaggctacgggtttgaggcc
agcgaggaggaactagacgtggacgacaaagtggagcaactcatgagaagggacagtgcc
ataatcaaggaggagatcaaggtgttcctggggaacaggcgtatctctcaggccgtggtg
gctcaggtcacaggtatcagtcagagtcgtatctcccactggctgctccagcagggctcg
gacctcagcgaacagaagaagagggccttctaccgctggtaccagttggagaagaccacc
cccggtgccactctgacgatgcggcccgcccccacgtctctggaggatgtggttgagtgg
cggcagactccgccccctgtaagctccacccccgggagcttccgtctgcgccgaggcagt
cggttcacctggaggaaagaatgtctggctgtgatggagagttacttcaatgacaaccag
taccctgatgaagctaaacgagaggagatcgctaacgcctgcaacgctgtcatccagaaa
ccaggaaagaagctgtctgatctggagaaagtcacgtctctgaaggtctacaactggttt
gccaaccgccgtaaggagatcaagagacgcgccaacatagaagaagcagcaatcctggag
agtcatgggatcgacgtccagagtcctggaggacactccaacggcgatgacattgagggg
aatgacttccctgaccagggctgtgaagcccctctgtttgaaaagagagctgttaccaga
cccttcagtcgactagacctgtcctctcccacacaggtgcccaccctgctgcccagctgg
ctggcggcttggcccggctcgggcagggggggcttggctgcccagagggctagctctctg
attggccgctccttgctctctgggtggggtctcgctcagggggcggggatggaaggttcc
agactgacaggtgtgtcctggtctcccccctccccccaggatgatgactccaccaatcac
agcaatgccctggagcaccaggatcccatcgcccttgccgtggagatggcggccgtcaat
cacagcatcctcgccctggcaacgcaggcggggggaggattggccctgggcgggacagga
agtgacatcaaaacagaggtgctggacgactag
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