Oncorhynchus mykiss (rainbow trout): 110505359
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Entry
110505359 CDS
T07259
Symbol
rpap1
Name
(RefSeq) RNA polymerase II-associated protein 1
KO
K20826
RNA polymerase II-associated protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110505359 (rpap1)
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
110505359 (rpap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP1_C
RPAP1_N
CEP104-like_TOG
Motif
Other DBs
NCBI-GeneID:
110505359
NCBI-ProteinID:
XP_021440210
Ensembl:
ENSOMYG00000033516
UniProt:
A0A8C7SXI1
LinkDB
All DBs
Position
25:12756249..12768426
Genome browser
AA seq
1417 aa
AA seq
DB search
MIRRPKPTDSEADLLEEQERFLASGTPSTVNVVRRPDKRSGDTNGAQGDQRDVVTIQDLP
DELPTLTPAPPKKSRLKVDRVRFEDEDPEERLDRHDTHISAVLSKIIERDTSTTPVSLPA
FTGLAFPKVLHRPEMESMVPAAGEKRSIFARQIAAQRIKEGNTPLYFAPESRGQTSGPKV
LNLSPESTMEMDQPPSRLDRFSAMAGPRLVSGQGLGGSDSTVEMLKIHQENQAKLQAMSN
GEILEEQKRLLGQLDPRFVDFVRSRKAQGALASAPQPSTSRDERLGEQRLQETVMIGAKK
PEQNPLEVEMEREEDEDEPTPQPPMKEEDLPVKPQKEWVHMDKLEPEKLEWIRDLPAPRR
KGTKQAMLARFDFAGTLIPPTEDLPTHLGLHHHGEEPELAGYSLQELFLLSRSQVIQQRR
LALNTLAHVLTKARAGEFAAALRGSVVSTLLDAGLLFLLRFSLDDNVEGVVSAAVHALRA
LLVSSDDEDCLDSTLSWFRGLASFPLLPTAQEEEDEEDEGLPEVMRETAQEKEEKKTDHD
VARNDVVKGLLRMKLLPRLRYILEVIRPSPRVVQDVLGVLIRIARHSSSAATQVLDCPRL
METVMSEFLPCSWTVPASPTLQSTYGLPVANAMKLLRVLATTGRHACARLLNSLGARERL
SRLLAPEPSELLLEPEEALRVSIEAYRLWAVAASYGQACNLYMDLYPILVRVLQSAHRPW
RPSEPLLPLELHRLQALLTLLTQVTHTAGCHQELQAGLVSSQGDECPPPPPVTWGHVTGL
QPTVLGLLKGCVRTLGEPVQRESTLRLVPAYLVYMGAFYSQLSIQSSFNPVECLQELEML
TSEVLLPLLSHEAVHSLINNLKCSSAVCNPQSCCPAPETIPSLPGLHCAGWTSAGGLPGP
NSPFPLITSLCYLLDTLTSIHRGLVRKFSSLLLFEAVLGYLRGCGQAKPTLSHWVLRHEH
HLLYLLLRLACRLVPTDPEVAKHAALFHHVSLVMLPWLLPGSEYLAHELMATMVFNKDFI
PEGQIGGPEAAEMSELRVQERSSPPLQTLGPLLREACVQLPSVRGCYLSHLAHMEPSVLS
SRDFHLGRTPWLNTQLLPELSGPFLPSDWPFLPLVSLYERAGAPDGGGLQVESLPAGAVQ
SVTHCLQWLLLLEVWREDALRVVLPVAKLARLACIFLCSSDLFMEMPVQRLTWALFRLLT
RPSQLEALDLNSPPTGLASFNDLYSALVGQFEAVSFGDPLFGCVILLPLQRRFSVTMRLT
LFGEHVGLLRSLGVTLEQLAVPMERFTSPPEDSLPLLRLYFRALVTGTLRLCWCPVLYVV
ALSHLNTFIFSQDAASQVQSTSQAQGVDQQVETARRSLLRKTHYLTDEVLRSHLLLFRLP
QKDAELGFNTYDQLPPIRQRRLESVLGTQGTSDSKGE
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgatacggcgtcccaagcccactgactcggaggctgacctcctagaagagcaggagagg
tttcttgcctcggggaccccatccactgtcaatgtggtccggcggccggacaagagatca
ggagacaccaatggggctcaaggagaccagagagatgtggtcacaatccaagatctccca
gatgagctccccactctgactcctgcacctcccaaaaagtctcgcctcaaagtcgatcgt
gttcgcttcgaggatgaggacccagaggagaggttggatagacatgacacgcacatcagt
gctgttctatctaagatcattgaaagggacactagcactacaccagtgtccttaccagca
ttcacaggccttgcttttcctaaagtattacaccggcctgagatggagagcatggttcca
gctgctggtgaaaagaggagcatttttgcccgacagattgcagcacagagaataaaagag
ggaaatacccctttatactttgcaccagaatccaggggtcaaacatctggacccaaggtg
ctgaacctctctccagagtctaccatggagatggatcaacctccctctagacttgacaga
ttcagtgcaatggcgggccccaggctggtatctggccagggacttggtgggtcagacagt
acagtagaaatgctgaagatccaccaggagaaccaggccaaactacaggccatgtctaat
ggcgaaatcctggaggagcaaaaaaggctgctgggtcagctagatcccagatttgttgac
tttgtgaggtctcgtaaggcacagggagcgctagcctctgccccacagccgtccacctcc
cgggatgagagactcggggaacagcgtctacaagaaaccgtcatgataggcgccaagaag
ccagagcagaatcctctggaggtagagatggagagagaggaagatgaggacgaaccaacc
ccccaaccgccaatgaaagaggaggacctgccagtcaagcctcagaaggagtgggtgcac
atggacaagctggagccagagaaactggaatggatcagggacctgcctgcccccagacgg
aaaggaaccaagcaggccatgctggctcgctttgactttgccggaaccctgatcccgcct
acagaggacctgcccacccaccttggtcttcaccaccacggagaggagcccgagctggct
ggttactccctgcaggagctcttccttctctctcgtagtcaggtgatccagcagcggcgc
ctggcactcaacactctggcccacgtcctcaccaaggcgcgggctggcgagtttgcagcc
gctctcaggggcagtgtggtgtccactctgctggatgctggccttctcttcctgctgcgc
ttctcactggacgataatgtggagggagtggtgtccgccgccgtgcacgcactccgagcc
ctcctggtgtcctcagacgacgaggattgtctggacagcactctctcatggttccgtggg
ctggcctcttttcctctactgcccactgctcaggaagaggaggatgaggaagacgagggg
ctgcccgaggtcatgagagagacggctcaagagaaggaagagaagaagactgatcatgac
gtggccaggaatgatgtcgttaagggtttactgaggatgaagctgcttcctaggctccgc
tacatcctcgaggtgatccgcccatcacccagggtggtccaggacgtgctgggagtcctc
atccgaatcgccagacactcctcctctgcagccactcaggtcttggactgccctcgtctg
atggagactgttatgtcagagttcctgccctgctcctggacagtgcccgcctcacccacg
ctccagtctacatacggactgcccgtggccaatgccatgaagctgctacgcgtcctggcc
accactggcaggcacgcctgtgccaggctgctgaactctctaggtgcgcgggagcgtctg
tctcgtctgcttgccccagagcccagcgagctgctgctggagccagaggaggccttgagg
gtcagcattgaggcctaccggctgtgggccgttgcagccagctacggacaggcctgtaac
ctgtacatggacctgtaccccatcctggtgagagtattgcagtctgcccaccggccctgg
cgcccctcagagcccctgttgcctctggagctccacaggctccaggccctcctcactctg
ctcacacaggtcacacacaccgccggctgccatcaggagctgcaggctggcctggtcagt
tcccagggggacgagtgtcctcccccacccccggtgacgtggggtcatgtgacaggtctg
cagcccacagtgctggggctgctgaagggctgtgtgagaaccctgggggagccagtccag
agggagagcaccctgagactggtgccggcctaccttgtctacatgggggccttctactcc
cagctctccatccagagctcattcaatccagtggagtgtctgcaggagctggagatgctg
acctcagaggttcttctccctctgctgtcccacgaggctgttcacagcctgattaacaac
ctcaagtgtagttcggcagtgtgtaaccctcagtcctgctgccccgcccctgagaccatc
cccagtctgcctggtctgcactgcgccgggtggacgtctgctgggggtctgcctggaccc
aactcccccttccccctcattacctccctgtgctacctcctggacaccctcaccagcatc
cacagaggcctggtccgcaaattcagctccctccttctctttgaggctgtgctaggatac
ctgcgtggctgtggccaagccaagcccaccttgtctcattgggtcctgcgtcatgaacac
cacctgctctacctgctgctgaggctggcctgtagactggttccaactgacccagaggtg
gccaagcatgctgccctgtttcaccacgtgtctctggtaatgcttccctggctattacct
ggcagtgaatacctggcccatgaactcatggccaccatggtcttcaacaaagacttcata
ccagagggtcagattggagggcctgaggctgcagagatgtctgagctgcgggtacaggag
cgctcctcccctcccctccagaccctgggtcctctgctgagggaagcctgtgtccagctg
ccctctgtccggggctgctacctctcccacctggcccacatggagccctctgtcctctcc
tccagggacttccacttgggcagaacgccctggctcaacacccagctcctcccagaactt
tctggacccttcctcccctccgattggcccttcctgccactcgtcagcctgtacgagcgg
gcgggtgcaccggacggagggggcctgcaggtggagtcgctccctgcgggggcagtgcag
tcggtcacacactgcctgcagtggctgctgctgctggaggtctggagggaggatgccctc
agggtggtactgcctgtagccaagctggcccgtctggcttgtatcttcctgtgctccagt
gatcttttcatggagatgcctgtccagaggctgacctgggctctcttcaggctgctcacc
aggccctctcagctggaggctctggacctcaactcccctcctacaggcctggcctccttc
aatgacctctattctgccctggtggggcagtttgaggcggtgtcattcggggaccccctg
tttggctgcgtcatcctcctgcctctgcagaggcgcttcagtgtcaccatgaggctgact
ctgtttggggagcacgtgggcctgctgcgctccctaggggtaactctggaacagttggcc
gtccctatggagaggttcacgtcacccccggaggactctctccctctgctgcgcctctac
ttccgggcgctggtgacagggacactgaggctgtgctggtgtcctgtgctctatgtggtg
gctctgtcccaccttaacaccttcatcttctcccaggacgcagcgtcacaggtacagagc
acgtcacaggcccagggtgtggaccagcaggtggaaacagcccgtcgcagcctcctgagg
aagactcactacctgactgatgaggtgttgaggagccacctgctgctgtttaggctgccc
cagaaagacgctgagctgggcttcaacacttacgaccagctgcctcccatccggcaacgc
aggctggagagtgttctggggacccaggggacgagcgatagcaagggggaatga
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