Oncorhynchus mykiss (rainbow trout): 110505402
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Entry
110505402 CDS
T07259
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110505402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110505402
03021 Transcription machinery [BR:
omy03021
]
110505402
03036 Chromosome and associated proteins [BR:
omy03036
]
110505402
Transcription factors [BR:
omy03000
]
Eukaryotic type
Helix-turn-helix
ARID
110505402
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110505402
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110505402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
110505402
NCBI-ProteinID:
XP_021440274
Ensembl:
ENSOMYG00000038082
LinkDB
All DBs
Position
25:complement(14658466..14882041)
Genome browser
AA seq
2374 aa
AA seq
DB search
MAAQVASAPTTTNNKKNKLSGSLGQEIHSGKSGGGTISRSGAMLGAGDGTNTMNNVDHHH
QNELNMVNSTSPNNNSDTREKESGNNITSSNSTTSLEGMETGLIANHKQNNVSGDPPLHL
TPPQQQSQFNPFPQHQQRQIQSNNINNSQATRGESENQHHGGKRGVLASQTEQQMLSKGE
GDHTCKPGERMGARYEHANLGPTTEISSQPQSAGGNSAISEFNNYYGTSRVGACYDQHGG
QNTGMGMMHSSGPNNMDPVHNSHEGYHNSQYNHYSGYRQGYGGAGYGMMAPSRQGSNMLI
GPGSNTPASHVKAAMGAASSGSGGSVGGFQRFPGHTQHPSGATPTLNQLLTSPSPMMRGY
GSGYHQDYNSPSAQQQAGIGLGKDMTSQYGSTTHGWPGQQRNHPSMSPGNGGQGISRPQV
ASVDFMAMKRSHLYGMGNNPYSQQQQGGPYPSQPYGSPATHRYPMGMQGRGQAGMGGMQY
PQQQVPPQYGQQGMGGYSQQQQGTPPGSYFSPPQQNPTAPTQPPYLPPRAPPQQEAPQES
YRGSTRSQQHVPGNSGKANLEDMGLIPQDRPSSLPDLSGAIDDLPTGTDAGHSSAVSATG
STSSQGEQSNPSQSPFSPHASPHLSGRGSGPSPSPVGSPVGSNQSRSGSGPISPVSGPTT
AQGSQMAPQIPVNTSDVPHSPLTQSPMPQERGFMSNMQRNQCGSQFATPPPQSGPSMSPH
PSPGPGPGGQMYPGMGPRPYPPGGSSGPYGPQGSQANQYGPQGNYPRPPNYGGTPSANYS
GPGPGMTNSLGMNASSPMHGQGPGQPMPMGRSLGAGSRPYPNMAPSSPSMPQPAGPGMGP
PSLGNVNRKAQEAAASVMQAAVNSVQSSRPPYVRSTALHTSSGPSPLPPFSTTPTPPPPP
PLQPPHPNYNTPHSQQHGQGSYPGPSINQIVPSINQSQGNNSGIGMPQGPPYNMPPSGPL
GTAGDGMVTPVGKQKMDGKEESMPTNEPPRPKDGYSGSQCVSQPTTPGAMPVPSPLSPSP
ASLSSYHGDDSDSISSPVWPKTPSSPKPNSSTMTNEQITRLYDMGGEPERRGWVDRYLSF
MEERGTPVPHLPAVGKKPLDLYRLYMVVKEIGGLAMVNKNKKWRELSTSLSVGTSSSSAS
SLKKQYIQYLFAYECKVERGEEQPADSNTGTGGDNRKQAKLQPPSPANSGSLQGPQTPQS
SGSSSMAEMSGDLKPPTPASTPQGQVTPIPASRNSVVSVQDPFSEVSDPVFQKRNSLPPG
GPGGLYQQGVNMPPDVMMRMQYEKDPFAGMRKVAGGDSYMPGQMPSGGMQEMYGRPPSGM
GQRSQYPYGPGYDRRPDHVIGMEGSMGTPGSQSNMGPSNSEGSIYSPNRYPSQLRHEGYG
QQYPGMSYGMHPSGMYPQQQGYKRPMEGMYGPPGKRHEGEMYGPPGKRHEGEMYGPPGKR
HEGEMYGPPGKRHEGEMYAMQYGSQQPDMYNQYSTGYSGPERRPMQGQFPYPSPYSRERM
QASGQGQHPQQPMGPQMMAGGPPSNNGVEGPQGPNMWPSRTDMGYPYSNRQGAPSQVPSY
GPLGRGEDMEGRPIQDGQWLGHGGHCQSSYMSGGMTPMSSRQPPSAYQTSPSMANHLPRA
PSPGSFQRSMEARMSPNKAAYMGSMKMPCKPGMPMPGQGSGHPGQVPPNLRRDLNYPLGS
VEATMPLLKPRRKMTSKDTGTPEAWRVMMSLKSGLLGESTWALDTVNILLYDDSTVASFT
LAQLPGFLELIVEYFRRCVMEIFGILEEYEIGTIGQKTLLGPEACNHRDELTSEPEMDCE
ASQPEPESEQEVERGEVEKGEVENGEDKPADITEKITVELMSPPSATVPAPEGTKEESEA
EVKVKKEEGEKEQEGEKGKEEGEKPTESKKVPAESKEDYPNQSEPRPQQASKYDKFPIKI
LHKEDLIEDMTERLAHVTEFTSGLLHWQVGGGDSTAHIQTHFEGRGEQPDRTEGERDECA
ILNKEQETDSRTEEKGNRITATIDDILCARLEALSEGHPTHSAPTYPFRLHQGGGHKHIT
LLEDEPRCLNEAPLSAASPWQDSLAKRCLCVSNILRSLSFIPGNDSDMSRHPGLVLILGR
LLLLHHQHPERKRTSPSYQREEVQERGLACSKDEWWWDCLTVLREDTLVTLANISGQLDL
SLYPETICLPILNGLLHWMVCPSAEAQDPFPSAAPHSPLTPQRLVLECLCKLSIQDNNVD
LLLATPPFSRQEKLYATLVRYVGQRKNQVYREMAVATLSNLAQGDSTSARAIAVQKSSVG
NLMCFLEDGVSMAQYQQNPHSLLHMAHHPPMEPPSVNMMCRAAKALLAMAKVEENRPEFV
LYEGRLLDISISSVLNPGVASIVCEVLFQFVKKL
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcaagtggcatcagcaccgacgacaactaacaataagaaaaataaattgtct
ggcagtttggggcaagagatacattcggggaaatcgggaggaggaactatatcgagatct
ggagcaatgcttggagctggagatgggactaacacaatgaataatgtagaccatcaccat
caaaacgagctgaacatggtcaattcaacttctccgaataacaattctgacacacgggag
aaggagagtggaaataacataacatcgtcaaattcgacgacctctctggagggaatggag
acgggtttgatagcaaaccataaacagaacaatgtgagtggagatccccctctgcacctc
acgccgccgcaacagcagtcacaatttaacccgtttcctcagcatcagcagcgccagata
caaagtaacaacatcaacaacagccaagcgacaaggggggagagtgagaatcagcaccac
ggagggaagaggggtgttttggcgagccagacagagcagcagatgctgagtaaaggtgaa
ggggatcatacctgtaaaccaggggagcgaatgggtgccaggtatgaacatgccaatttg
ggaccaacgaccgaaatcagcagccagccccagagcgcaggagggaacagcgctatttca
gagtttaataactactatggcacttccagagtaggggcctgctatgatcaacatggcgga
caaaacactgggatggggatgatgcactcctcgggacccaacaacatggacccagtgcac
aactcccacgaaggataccacaacagccagtacaaccactactctggctaccggcagggc
tacggtggagcgggctacggtatgatggccccgtccagacagggcagtaacatgctgatt
ggccctggcagcaacactccagctagccatgtcaaggctgctatgggagctgcttcctcc
ggttctggtggaagtgttgggggctttcagagattcccaggacatactcagcatccctcg
ggagccaccccaactctaaaccaactgctgacgtctccaagtccaatgatgcgaggttat
ggcagtggctatcatcaagactataacagtccctctgcacaacaacaagctggcatcggt
ttaggcaaagacatgacttctcagtatggctccacaacccatggctggccagggcaacag
agaaaccacccgtccatgagtcctggaaacggagggcaaggtatcagcagaccacaggtg
gcttccgtggacttcatggctatgaagcgctcccatctctacgggatgggcaacaacccc
tactctcagcagcagcagggcgggccctaccccagccagccatacggatcgcccgctaca
cacagatacccaatgggaatgcaggggaggggccaggcgggcatgggcggcatgcagtac
cctcaacagcaggttcccccccagtacggccagcagggtatgggaggatacagccagcag
cagcagggaacacctccgggatcctacttcagccccccccagcagaaccccaccgccccc
acacagcccccctacctgcctccccgcgccccaccccagcaggaggctccgcaggagagc
tacagaggcagcaccaggagtcagcagcatgtcccagggaattctgggaaggccaacctt
gaggacatgggtctgatcccgcaggaccgcccctccagcctcccggacctgtctggtgcc
atagacgacctccctacagggacggacgctggtcacagttcagccgtcagtgctacaggc
tccaccagtagccagggggagcagagtaacccgtcccagtcacccttctcaccccacgca
tcaccccacctgtctggccgaggcagtggcccatcgccctctcctgttggctcccccgtg
ggctccaaccaatcacgctccggctctggcccaatctccccagttagcggcccaaccaca
gcacaagggtcccagatggccccccagatccccgtcaacacgtcggatgtccctcactcc
cccttgacgcagtcccccatgcctcaggagaggggctttatgtccaacatgcagagaaac
cagtgtggctcccagtttgcaacaccaccacctcagtcggggccttccatgtcccctcac
ccctctcctggtcctggtcctggaggacaaatgtacccagggatggggcccaggccctac
cccccgggtggctccagtggcccctacggaccccagggatcccaggcaaaccagtatgga
ccccaaggtaactacccacgtccacccaactacggtgggacccccagtgccaactacagc
ggtcccggccctggcatgaccaacagcctgggtatgaatgccagtagccccatgcacggc
cagggtcccgggcagcccatgcccatgggccgcagtcttggcgcgggcagccgaccctac
cccaacatggcccccagctcccccagtatgccccagccggcaggcccagggatgggccct
ccttcactgggcaacgtcaaccgcaaggcccaggaggcagccgcttccgttatgcaggcc
gcagtcaactctgtacagagcagtagacctccctatgtgaggtccacagccctccacacc
tcttctggacccagtcccctgccccctttctccaccacacccacccctcctcctcctcct
cctctccaacctccccaccccaactacaacacccctcattctcagcaacacggacagggc
agctacccaggccctagcataaaccagattgtgccctccatcaaccagtcacagggcaac
aactcaggcattggcatgccacagggtccaccctacaatatgccaccctcagggcccttg
gggacggctggggatgggatggtgactcctgttgggaagcagaaaatggatggcaaggag
gagagcatgcccaccaatgaacctcccagacccaaggatggctacagtggatcccagtgt
gtctcccagcccaccacccctggtgccatgcctgtcccctctcccctgtcccccagccca
gccagcctgtcctcctaccatggggatgacagtgacagcatcagcagccccgtctggcca
aagactccctccagccctaagcccaactcgtccaccatgactaacgagcaaatcacacgt
ctgtatgatatgggtggggagccggagaggcgtggctgggtggaccgctacctgtccttt
atggaggagaggggtacacctgttccccacctccctgccgtgggcaagaagcccctggac
ctctacagactgtacatggtggtcaaggagatagggggcctggccatggtgaacaagaac
aagaagtggcgagagctgtccactagtctgagtgttggtacctccagtagctccgccagc
tctctgaagaagcagtacatccagtacctgtttgcctatgagtgtaaggtggagcgggga
gaggagcagccggccgacagcaacactgggactgggggggacaacaggaagcaggccaag
ttgcagccgccctctcctgctaactcagggtccctgcagggcccccagaccccccagtcg
tcaggcagcagctccatggcagagatgtcaggtgacctgaaaccccccaccccagcctca
accccccagggccaggtcacccccatcccagccagcaggaacagtgtggtcagtgtgcag
gacccgttctctgaggtgagcgacccggtcttccagaagcgtaactccctccccccgggg
ggccctgggggactgtaccagcagggggtcaacatgccccctgacgtgatgatgaggatg
cagtacgagaaggaccccttcgctggcatgaggaaggtggcaggaggggattcctacatg
ccaggccagatgcccagcggtggcatgcaggagatgtatggcaggcctccatcaggcatg
ggccagcgttcccagtacccatacggaccaggctacgacaggagaccagaccatgtgata
gggatggaggggagcatgggcacccccgggagccagagcaacatgggaccttccaacagc
gagggcagcatatactctcccaacagatacccctcccagcttagacatgagggttacggg
cagcagtaccctggcatgtcatatggaatgcacccctcagggatgtacccacaacaacag
ggttacaagcgccccatggagggcatgtacggccccccaggcaagaggcacgagggggag
atgtacggccccccaggcaagaggcacgagggggagatgtacggccccccaggcaagagg
cacgagggggagatgtacggccccccaggcaagaggcatgagggggagatgtatgccatg
cagtacggcagccagcagcctgacatgtacaaccagtacagcactggttattctggtcct
gagaggaggcccatgcagggccagttcccttacccctccccctacagccgagagcgcatg
caggcctctggccaggggcagcacccccagcaacccatgggtccccagatgatggccggg
gggccaccctccaacaacggagtagaaggaccccaggggcccaacatgtggccctctagg
acagacatgggttatccctactctaacagacagggggcaccctcccaggtaccgtcatac
ggtcctttggggagaggagaggatatggagggccgacccatccaagatggtcagtggctc
gggcacggaggccattgccagtcctcctacatgtcaggtggtatgacacctatgtcctct
cgccagcccccctctgcctaccagacctccccctccatggccaaccacctgccccgagca
cccagccccggctccttccagcgctccatggaggcacggatgtcccccaacaaagctgcc
tatatgggctccatgaagatgccatgcaaaccgggcatgcccatgccagggcagggtagt
gggcacccaggccaggtcccacctaacctgcggagagacctcaactaccctctaggatct
gtagaggccaccatgccccttctcaagccccgccgcaaaatgacctcaaaggacactgga
accccagaggcgtggcgagtgatgatgtctctgaagtcgggtctgctgggtgagagtacg
tgggccctggacaccgtcaacatcctgctgtatgatgacagcactgtggcctccttcacc
ctcgcacagttgcctggcttcctggagctgatagtggagtacttcagacgctgtgtgatg
gagatctttggcatcctggaggagtatgagatagggaccatcggccagaagaccctgctg
gggcctgaagcctgtaaccatagagatgagctgacctctgaacctgagatggactgtgag
gccagccaaccagagcctgagtctgaacaggaggtggagaggggggaggtagagaagggg
gaagtagaaaatggggaggacaaacctgctgacatcacagagaaaattacagtggaactg
atgtcaccccccagtgcaacggtaccagcccctgagggaacgaaggaggaatctgaagcc
gaagtgaaggtaaagaaggaagagggggagaaagaacaggagggagagaaagggaaagaa
gaaggagaaaagcccacagagagtaagaaagtcccagctgaaagtaaggaagactatcct
aatcagtcagagccaaggccacaacaggccagcaagtacgacaagtttcccattaagatc
ctgcacaaagaggacctgattgaggacatgacggagcggctggctcacgtgacagagttc
actagtggactgctccactggcaggtaggcgggggggattccacggcccacatccagacc
cactttgagggcaggggagagcagcctgacaggacggagggagagagagacgaatgtgct
attctgaataaagaacaggagactgactcgaggacagaggagaaggggaatcgtatcacc
gccaccatcgatgacatactgtgtgcccggctcgaggctctgtcagagggccaccccacc
cactctgcccccacctacccattcaggctgcaccagggtgggggccacaagcacatcacc
ctgctggaggacgagccccgctgtttgaacgaggctcccctctcagcagcttctccttgg
caggactccctggccaagcgctgcctctgtgtgtccaacatcctccgcagcctctccttc
atccctgggaacgactcagacatgtcccgtcacccaggcctggtactgatcctgggcaga
ctgctgctgctccaccaccagcacccagagaggaagaggacgtcccctagctaccagaga
gaggaggtgcaggagcggggcctggcctgcagtaaggatgagtggtggtgggactgtctc
actgtactcagggaggacaccttggtcaccctggctaacatctctggccagctggacctt
tccctctacccagagaccatctgcctgcccatcctgaatggcctactccactggatggtg
tgtccctctgccgaggcccaggaccccttcccctcggccgccccccactcccccctaacc
ccccagagactggtgctggagtgcctgtgcaagctgagcatccaggacaacaacgtggac
ctgctactggccacgccaccgttcagccgccaggagaagctgtatgccaccttggtgcgc
tacgtgggtcagcgtaagaaccaggtttatcgcgaaatggctgtggccaccctctccaac
ctggcacagggggactccacgtcggcacgcgccatcgcagtacagaaaagcagcgtgggt
aacctgatgtgcttcctggaggatggggtgagcatggcccagtaccaacagaacccccac
agcctgctgcacatggcccaccacccccccatggagccccccagtgttaacatgatgtgt
cgggctgcaaaggctctgctggctatggccaaggtagaggagaacaggccagagtttgtc
ttgtatgagggcagactcctggacatctccatctcctctgtgctcaacccgggggtagcc
agcattgtatgtgaagtactctttcagtttgttaaaaaattatga
DBGET
integrated database retrieval system
