Oncorhynchus mykiss (rainbow trout): 110505404
Help
Entry
110505404 CDS
T07259
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110505404
03041 Spliceosome [BR:
omy03041
]
110505404
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110505404
Spliceosome [BR:
omy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
110505404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
DUF3525
Motif
Other DBs
NCBI-GeneID:
110505404
NCBI-ProteinID:
XP_021440277
Ensembl:
ENSOMYG00000038218
LinkDB
All DBs
Position
25:complement(15114284..15155643)
Genome browser
AA seq
1510 aa
AA seq
DB search
MEAVKAFNGELFSLNEYKPPISKAKMTNITKSAIKAIKYYKHVVQGVEKFVQKCKPEYKV
PGLYVMDSIVRQSRHQFGQDKDVFAPRFSKNIIGTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGLPPPSVTPVMTSRDAAVNTPGTPATPATPANIVSSLPDWASQF
SNTDTVAAVAQILQSPHGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQLTA
AATANPMQLNPLEQRISSFNKKMLGHFDFGNDSERSEDPKKDAQSSQMPMVSDSIFHQLA
EQLQQQNLEHFQKQLMEHQQKSMNMEGQDGIFGSENTAMPQQSSSQSQHPAPQNKTDDSI
DNQQQDMDLDDGPEIEEERFEPEDKKSKTVDTRSRTRSRSRSRSPRKRRSRSRSGSRKRK
HRKRSRSRSRERKRKSSRSYSSERQEAREREKERQKKGLPPIRSRFLSVCSTTLWVGQVD
KKASPQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYCARQKLSTGSFKVVSKIIK
IAWALNKGVKQEYKQFWDMDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNAEWEAAKNA
PEPMKEAVSQAVSVEPMTATNTQHTQQEAFSQQEAFSQQEAFSQQVSMMPVQLPVAQAVP
AVGLVPPSFPVSMAMPPPGYGPLPPFLRAGFNASQPPPGFMQTAGVPQQAGMGSAPISLV
PASMSQAQDSMKDSPYGATIPGSFMPSALPGQGVFNQLQPGVQTQQAANDKMGQSADGMD
AAAELVLQGMQNAMSRGMGLLGMHPSASLTHPLHQQGLPGQRMPGLMPLDLRPTMLQGAG
ARFPLLMQQGLSQQSLLEASLHAQARARAASQMERFNRAEEAFNRGPNPPNESMSKAEEE
PSSGADDSQQGGDQDYRFPPPQEKQSTGLLRTPPLEHRESMGGGAGGGGLGGGRPALLQT
PVREPARDSVAGRLQALAGFTPQTSSRWGPLRGDFDERDMRSSPAAVSKGFQEARPGSNQ
GQNFPNRFENQNRAGSVGGVGGGVCTGGVGGGPAWSRGGVDAAAQFTDADMPQDLDECRR
PWDRQQRDRDFDFRKEMNGNRRERDSREKERERERERDRGRERGNREREQERDREREREK
EREKDRERERERERNKRGAWTPLLPLPQPLLPTPTLTPTLSLTQGKPQALLQLQSKLQPK
PGLLTKPGLLQTPTLLTRSTSHVPTKSLLQAPSQSLLQAPSQSLLQAPSQSLLQAPSQSL
LQAPSQSLIQAPSQSPPLTSHQSSQSPKAPPQSTQFPTQAKNEARPGPKPQTEFHSSPQT
HVSPKSESSPQNQSPPQNQASLQAQLLHPAHSSFQTKSPPQGQSSSRAQSPPQALSLQAP
RTPEEITDTQGEPEKPGKPQEEPMKEPEPMVEPPSRWVNGTGSRMDTDAVAEPTTTPSPN
PALSMSLVLTHSPVEPQCLPEPLDQQHPSQHVASCSSTKDVDNGLSEPMEEAEKQPVVEK
TDTEGTIITQ
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtcaaagcattcaacggcgagctcttctcgttgaatgagtacaagcctcca
atctccaaggcgaaaatgaccaatattaccaagtctgcaataaaagctataaaatactac
aaacatgttgtccagggcgtggaaaaatttgttcagaaatgcaagccagagtataaggtc
ccaggcctgtatgtcatggactccatcgtgcggcagtcacggcaccagtttggccaggac
aaggatgtgtttgccccgcgcttcagcaaaaacatcatcggaaccttccaacatctctac
cgctgcccctcagatgacaagagtaagattgtcagggtcctcaacctctggcagaagaac
gccgtcttcaagagtgacatcatccagcctttgctcgacatggctgcaggactgccccct
cccagtgttaccccagtcatgaccagccgtgatgctgcagtcaacacgcctggtacacca
gcgaccccggccaccccagccaacatcgtatccagtctgcctgactgggcgtcacagttc
tccaacacagacactgtagctgctgtggcccagatcctgcagagtccacacggccaacag
ctccagcagctggtgcagagcctgcaaatgcagcagcagaagccccagccatctctgctt
caggcgttggatgcaggactggtggtccagttgcaggctctgacggcccagctcactgca
gccgccacggccaaccccatgcagctcaaccccctggagcagaggatctcctccttcaac
aagaaaatgttgggccattttgactttgggaacgattcagaacgctctgaagaccccaaa
aaggacgcccaatcatcccagatgcccatggtgtctgactccatcttccaccagctggct
gagcagctgcagcagcagaacctggagcacttccagaagcagctcatggaacaccagcag
aagtccatgaacatggaagggcaggatggaatatttgggtctgagaacacggccatgccc
caacagagcagcagccaatcacagcacccggcgccgcaaaacaagacggacgactcaatt
gacaaccagcagcaggacatggacctggatgacgggccagagattgaggaagagcgtttc
gaaccagaggacaagaagtccaagacggtcgacacgcggtcaagaacacgttctaggtca
cgatcaagatctcccaggaagagacggtccagatcacggtcaggctctcggaaacggaaa
caccgtaagcggtcgcggtcacgctccagagagcggaagaggaagtcgtcgcggtcctac
tccagcgagagacaagaagcccgcgagcgagagaaagagcgccagaagaaaggactgcct
cccatccgatccaggtttctcagtgtgtgcagcaccactctgtgggtgggacaggtggac
aagaaggccagtccgcaggacctcaccaacctgtttgaagagtttggtcagattgagtcg
atcaatatgatccctcctcgtggctgtgcctacatctgtatggtccacagacaagatgcc
tactgcgccagacagaaactcagcactggttcattcaaggtcgtctccaagattatcaag
attgcgtgggcgctgaataagggagtgaagcaggagtataagcagttctgggacatggac
ctgggggtcacctacatcccctgggagaaggtcaagttggacgacctggacggctttgct
gagggaggcatgatcgaccaggagactgtcaacgccgagtgggaagcagccaagaatgcg
ccagagccaatgaaggaagctgtgagccaggctgtgagtgttgaacccatgacagccacc
aacacccaacacacccaacaggaggctttcagccaacaggaggctttcagccaacaggag
gccttcagccaacaggtctccatgatgcctgtacagctccctgtggctcaggctgtccct
gccgtgggtcttgtgcctccatccttccctgtttccatggcgatgcccccgccaggctat
ggccccctgccccccttcctcagagcgggtttcaacgcctcccagcctcctccaggtttc
atgcagacagcaggtgttcctcagcaagcaggcatgggctcagctcctatatctctggtg
ccggcctccatgtcgcaggctcaggacagcatgaaggactccccatacggagctactatc
ccggggagcttcatgccctctgccctccctggacaaggggtcttcaaccagcttcaacct
ggagtccagacgcagcaagcagccaatgacaagatgggccaatctgctgacggcatggat
gcagctgcagagttagtactgcaaggtatgcagaatgcaatgagtcgtggtatgggtctt
ctggggatgcacccctcagcttcccttacccaccccctgcaccagcagggcctgcctggc
cagaggatgcctgggctgatgccgctggacctccggcctactatgctccagggtgccggt
gcccggttccccctcctgatgcagcagggcctgtcccaacagagcctcctggaagcgtcc
ctccatgcccaggcacgcgccagagcggcctcccagatggaacgcttcaacagggccgag
gaggccttcaaccgggggcccaaccccccaaacgaaagcatgtccaaggctgaggaggag
ccttcctctggagctgacgatagccagcagggaggggaccaagactaccgcttccctccg
ccccaggagaagcagagcacaggcctactgaggacccctcccctggagcacagagagtcc
atgggtggaggagctggtggtgggggtttgggcggaggcagacctgccctgctccagacc
ccagtgagagagccagctagagacagcgtggcagggcggcttcaggccctcgccggcttc
accccccagacctcgagtcgctgggggccactcagaggggactttgatgagcgtgacatg
cggagctctccggccgcggtctccaagggcttccaggaagcgcgccctggctctaaccaa
gggcagaactttcccaaccgctttgagaaccagaaccgcgctggatcagtaggaggggta
ggaggaggagtatgtactggtggtgttggagggggcccggcgtggagtcgtggtggagtt
gatgctgcagcacagttcactgatgctgacatgccccaggacttggatgagtgccggcgc
ccttgggacaggcagcaacgggacagggactttgacttcaggaaggagatgaatggcaac
cggcgtgagagagacagccgtgagaaggagagggagcgcgagagagaaagggaccgtggc
cgtgagcgtggcaaccgtgaacgagagcaggagcgtgaccgggagagagagcgtgaaaag
gagagggagaaggatcgggagagggaacgtgagagggaacgtaacaagcgtggagcctgg
acaccccttcttcctctaccacaacccctgctccctactcctaccctgaccccaaccctc
tccctgacccaaggaaaacctcaggccctgctgcaactacagtccaagcttcaacctaaa
cctggactcctaactaaaccgggtctgcttcaaactccaactctcctaactcggtcaaca
tctcatgtcccaaccaagtctcttcttcaagccccatcccagtctcttcttcaagcccca
tcccagtctcttcttcaagccccatcccagtctcttcttcaagccccatcccagtctctt
cttcaagccccatcccagtctcttattcaagccccatcccagtctccacctctaacctct
caccagtcatcccagtcacctaaagctccaccccagtccacccagtttccaactcaagcc
aagaatgaagctcgccccggtcctaagccccagacagagttccattcctctccccagaca
catgtgtcccccaagtctgagtcctctcctcagaaccagtcaccaccccaaaaccaggct
tcccttcaggcccagttgctgcaccctgcccattcctctttccagacaaagtcccctccc
cagggccagtcatcatcacgtgcacagtcaccaccccaggccttgtccctacaggccccc
cgcaccccagaggagatcactgacacacagggggagccagagaagccagggaaacctcag
gaagaacctatgaaagaacctgaacccatggtagaacctccatctcggtgggtcaatgga
acagggtcgaggatggacactgacgcagtggctgagcccaccactaccccgtcccccaat
cctgccctctcaatgtcactggtcctcacacacagccctgtggagccccaatgcctgccg
gagcccctggaccagcagcatccctcgcagcatgtcgcctcttgctcctccacaaaggat
gtagacaatggactgagtgagccgatggaggaagctgagaaacagccagtggtagagaaa
acagacactgaggggacaatcatcactcagtag
DBGET
integrated database retrieval system
