KEGG   Oncorhynchus mykiss (rainbow trout): 110505430
Entry
110505430         CDS       T07259                                 
Name
(RefSeq) histone deacetylase 1 isoform X2
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03082  ATP-dependent chromatin remodeling
omy03083  Polycomb repressive complex
omy04110  Cell cycle
omy04330  Notch signaling pathway
omy04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    110505430
   03083 Polycomb repressive complex
    110505430
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    110505430
   04350 TGF-beta signaling pathway
    110505430
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    110505430
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:omy03036]
    110505430
Enzymes [BR:omy01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     110505430
Chromosome and associated proteins [BR:omy03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     110505430
   HDAC complexes
    Sin3A-HDAC complex
     110505430
    BRAF-HDAC complex
     110505430
    REST complex
     110505430
    SHIP complex
     110505430
    MiDAC complex
     110505430
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     110505430
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    110505430
  Chromatin remodeling factors
   NuRD complex
    110505430
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 110505430
NCBI-ProteinID: XP_021440309
Ensembl: ENSOMYG00000041964
UniProt: A0A8C7U6R5
LinkDB
Position
25:complement(16142776..16154237)
AA seq 497 aa
MALSSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
NGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSAIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEEDPNKRISIRAHDKRIACDEE
FSDSEDEAEGQGGGRRNAASFKKAKRTKTEEDKEGEEKKAGDEKKADEKKEVKEEKVPDE
EKMDTSTKGPKEESKTP
NT seq 1494 nt   +upstreamnt  +downstreamnt
atggcgctgagttctcaaggaacaaagaaaaaagtttgctactattatgatggtgatgtt
gggaattactactatggccagggccaccccatgaagccacaccgtatccgcatgacacac
aacctcttgctgaactatggtctctacagaaagatggagatataccgacctcacaaagcc
aatggcgaggagatgaccaagtaccacagtgacgactacatcaagtttctgcgttccatt
cggccagacaacatgtcagagtacagcaaacagatgcagagatttaacgttggagaggat
tgccctgtgtttgatggcctgtttgagttctgccagctctcaacgggaggctctgttgct
ggagctgtgaagctgaacaaacagcagacagacattgccattaactgggccggaggcctc
catcacgccaagaagtctgaggcgtcaggtttctgctatgtgaatgacattgtgctcgcc
attctggagttactgaaataccaccagagagtcctgtacatagacattgatatccaccat
ggagatggagtggaggaggcgttttacaccacagacagggtcatgaccgtgtccttccac
aagtatggagagtacttccccggcaccggagacctgagggatattggcgccgggaagggc
aagtactatgctgtgaattaccctctgagagatggtatagacgacgagtcttacgaagcc
atattcaaacctatcatggctaaggtgatggagatgtaccagcctagtgcagtggttctt
cagtgtggagccgactccctctcaggagacaggcttggctgctttaacctcaccatcaaa
ggccatgctaagtgtgtggagtacatgaagagcttcaacctgcccctgctgatgctgggt
ggtggaggctacaccatccggaacgtggcccgctgctggacctatgagaccgccgtggcc
ctggacagcgccatacccaatgagcttccatacaatgattactttgagtactttgggccg
gacttcaaactgcacatcagcccctctaacatgaccaaccagaacaccaacgactacctg
gagaagatcaagcagcgtctgtttgagaacctgcgcatgctgccccatgccccgggtgtt
cagatgcaggccatcccagaagatgctgtgcaggaggacagtggagacgaggaggaggaa
gaccctaacaaacgcatctccatccgtgcccacgataagaggatagcatgtgacgaggag
ttctccgactctgaggacgaggctgagggtcaagggggcggacgcagaaatgcagccagc
ttcaagaaggccaagaggaccaagactgaggaagacaaagagggcgaggagaagaaagca
ggtgacgaaaagaaagctgatgagaagaaagaagttaaagaagaaaaggtgccagatgag
gagaaaatggacacctccacaaaggggccaaaagaggagtccaagacaccgtga

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