Oncorhynchus mykiss (rainbow trout): 110505433
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Entry
110505433 CDS
T07259
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013
Nucleocytoplasmic transport
omy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110505433
03015 mRNA surveillance pathway
110505433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110505433
03041 Spliceosome [BR:
omy03041
]
110505433
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110505433
Spliceosome [BR:
omy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
110505433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
110505433
NCBI-ProteinID:
XP_021440312
Ensembl:
ENSOMYG00000043066
UniProt:
A0A8C7U520
LinkDB
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Position
25:16221724..16238326
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AA seq
870 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVVKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDDEKKEKENRERESPRRRKSRSQSPRRRSPVKR
ERKRSHSRSPRRKPSPSSSPPPPAPAVTLVSVTLPQNTEEPQPEPDTSESTIPEPVIQEA
SSTSDVVKPDTVVVVPDSVTEVKEPSPDKAPKKDRLKPREREKDSRRDRPHHRSRSHSRS
RRRPRSRSRSYSPRRRPSPRRRLSPRRRSPPRRGPPGPRHRRSRSPVRRRRSRSPSSSGS
SSTSHSPHKKAMKRTSTTPPRKQPRGHAADPSLSPSRRRAPNGSPSGKTQRSASPRARKG
RASASPSRSAGSKKKPGTRNDSPSPVPKPRQSEASESEGATADSVQQRRQYRRQNRETSS
EAGSSSSSEGEGSKRPGRGPVARNGDVRRRRSHSPSSPRRRHRDGSPRKRRSPSPGGRRS
PPRRRRSPSPPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPTPLGPQKRRLSGSPSPKRL
SPVPKRRPSRSPKRRSPPPQKRRTPPSSTSPPRHRRSPMLPSNRPGRDTRSPPLAHSNRL
SPSPANRGRTSPQGRFDTSPPGQRRQVSPSHGNRAIRRVSRTPEPRKNQRASQSPQPMRR
VSSRSPSGSPKPGALKRPASGSPSPGHSASGSPPAPPAKKASSGSGSPSPNKNSDTEPGG
KKNKKKKKEKKHKKEKKHKKHKKHKKEKCDVPVAAGDDQENQGMEGDAASNSKKESDSEV
EECLDDLEKHLREKALRSMRKAGKLSPPLS
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggttcttccgcggcacaagtgcagaacaggacaatcgcttcagcaacaag
cagaagaaacttctaaagcaactgaaatttgcagaatgtctggaaaagaaggtggatatg
accaaggtgaacctggaggtcgtcaaaccttggatcactcagcgagtgacagagatcctg
gggttcgaggatgacgtcgtcatagaatttatatttaaccagctggaagaaaagcacccg
gacagtaagatgatgcagattaacctgactggcttcctgaatgggaagaatgcccgagag
ttcatgagggacctgtggcctctgctgctcagcgctcaggacaacatcgccggtatcccc
tccgccttcctagagcagaagaaagaggagatcaaacagagacagattgagcaagagaag
ctcgcttctctgaagaagattgatgatgagaagaaggaaaaggaaaacagagaaagggag
agccccagaaggaggaagtcaaggtcacagtctccacggcgacgatctccagtgaagagg
gagaggaagcgcagtcactcccgctcaccgaggcgtaagccaagtcccagcagctcccct
ccaccaccagccccagctgtcacccttgtcagtgttaccctgccccagaacactgaggag
ccccagcctgagccagacacctcagagagcaccatacctgagccagtcattcaggaggcc
tcctccaccagtgatgtggtaaagccggacactgtggttgtggttcctgactctgtgact
gaggtcaaagaaccctccccagataaggctcctaaaaaggataggctcaagcccagggaa
agggagaaggacagcaggagagacaggccccaccaccgctctcgctcccattcccgctcc
cgcagacgacccagatcacgctccaggtcttactccccccggcggaggccgagccccagg
agacggttgtcccctcgtcgtaggagcccccccagacgtggccccccaggccccagacac
aggcgcagtcgctcccctgtccgcagacggcgctctcgctccccatcatcctctgggagc
agctccacgtctcactcacctcataagaaggcaatgaagagaacgtcaaccacaccaccc
agaaaacagccccgcggccatgcagctgacccctccctcagcccctccaggagaagagcc
cccaatggcagcccctctgggaagacacaacgctctgcctccccgcgggccagaaagggc
cgggcctcagcctccccatccagatcagctgggtcaaagaagaaaccaggaacgaggaac
gattcaccgtcccctgttccgaaacccaggcagtctgaggcatcagagtcagagggggct
acagccgattctgtgcagcagcgacgtcagtatcgcaggcagaatcgggaaacgtcttca
gaggctggatcatcatcatcctcagaaggtgaggggtccaagaggccgggcagggggcca
gtggcgaggaacggggatgtcaggcggcggcgtagtcactcgccctcctcccccaggaga
cgacaccgggatggctcccccagaaaaagacgctctccttcccccggaggacgcagatct
cccccaaggcgtcgcagatctccctctcctcctcctaggcgcaggtctccctctccacca
cctcgcagacgctccccctcccccagacggtactctccacccatccagcggcgatacagc
cccactcctttgggcccacagaaaagaaggctgtcagggtctccctctcccaaacgccta
tccccggtgcccaagcgccgtccctccaggtcccctaagcgcaggagtccccctccccaa
aagagacgcacacctccctcatccacctctccccccagacacaggagaagccccatgctc
ccatccaaccgaccaggccgggacactcgctcacccccccttgctcacagtaaccgcctg
tccccttcccctgccaaccgtggccgaaccagtcctcaggggcgctttgacacctctcca
cctggacagaggcgccaggtgtccccctcacacggcaacagggcaatccgcagggtgtcc
cggacaccagagccccgcaagaaccagagagcctctcagagcccccagccgatgaggaga
gtgtcatcaaggtcaccgtctggttcccctaaaccaggagccctgaaacggccagcttca
ggctccccttctccaggccactcagccagtggatccccacctgcacccccggctaaaaag
gccagcagcggctctggcagcccttctccaaacaagaattctgacactgagcctggagga
aagaaaaacaagaagaagaagaaggaaaagaaacacaagaaggagaagaagcataagaag
cacaagaaacacaagaaggagaagtgtgatgtgccggttgctgctggggatgaccaggag
aaccaggggatggagggcgacgcagcctccaactcaaaaaaggaatcagacagtgaagta
gaagagtgtctggacgacctggagaagcacctgagagagaaggcactgcgttccatgagg
aaagctggaaagctgtcccctccactgtcctga
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