Oncorhynchus mykiss (rainbow trout): 110505629
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Entry
110505629 CDS
T07259
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04137
Mitophagy - animal
omy04140
Autophagy - animal
omy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110505629
04137 Mitophagy - animal
110505629
04148 Efferocytosis
110505629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110505629
Transcription factors [BR:
omy03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
110505629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
HIF-1a_CTAD
PAS_11
HIF-1
PAS
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
110505629
NCBI-ProteinID:
XP_021440643
Ensembl:
ENSOMYG00000025188
LinkDB
All DBs
Position
25:22665920..22696558
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AA seq
782 aa
AA seq
DB search
MNFRLFLYGPETQFIFLAEAQNKSVVIKMNTVVPEKKSRVSSERRKEKSRDAARFRRGKE
SEVFYELAQELPLPHSVTSNLDKASIMRLAISYLHMRKLLSTEDKAVEKEQEESEMDSQL
NGSYLKALEGFLMVLSKDGDMIYLSENVNKCLGLAQFDLTGLSVFEYTHPCDHEELREIL
VHRTGTSKKSNGPNTERSFFLRMKCTLTSRGRTVNVKSSTWKVLHCSGHVRVHEAPTEQS
PIGHKEPPVSYLVLVCDPIPHPSNIEAPLDTKTFLSRHTLDMKFTYCDERITELMGYDPE
DLINRSVYEYYHALDADYLTKTHHNLFVKGQVSTGQYRMLAKIGGFVWVETQATVIYNNK
NSQPQCVVSVNFVLSGIEEEKMVLSLEQTEDMRSVKKELVEEEEDEGPEAEVSPVLLKEE
KVDVIKLFTQAMEDQPLASLYDRLKEEPEALTLLAPAAGDTIISLDFSSPDSDILLKEVP
LYNDVMLPSTSDKLALPHSMLPPNEQPLIPSASVDTKAGPDSFSTPGSHSSTEPDSPLNF
CFPMDSDISAALKLDLVERLFAIDTEPKTPFTSQGMEDLDLEMLAPYIPMDDDFQLRTLS
PEEPPSCGPAQPLESSLCSPLHLTLSYTDSPFSAPRSRKASPAPELAASPCPASLLTMRA
PPMDREMSLRTLATQNSQRKRKLSLSQAVGIVNGALLQDPPGPGKKLKVSELGSSEAPSN
RTILLLPTDLASCLLGISSEGSGSPFTLPQLTRYDCEVNAPVVGRQHLLQGEDLLCALDQ
VN
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgaattttcgcttgtttttgtacgggcccgaaacacagtttatcttcttggctgaggct
caaaataagtccgtcgtcattaaaatgaacacagttgtcccagaaaagaaaagcagggtg
agctcggagcggaggaaggagaagtcccgggatgcagcgcgattccggagggggaaggag
tcggaggtgttctacgagctggcccaggagctgcccctgccccacagtgtcacctccaac
ctagacaaggcttctatcatgagactggccatcagctacctgcacatgaggaaactgctg
agcacagaagataaggcagtagagaaggagcaggaggagagtgagatggactcccagctg
aatggctcctatctgaaggctctggagggcttcctcatggtgctgtctaaagacggggac
atgatctatctctctgaaaatgtcaacaagtgcttgggtctggcacagtttgacctgaca
ggacttagtgtgtttgagtacacacacccctgtgaccacgaggagctaagggagatcctg
gtacacagaacagggacctctaaaaagtccaatggaccaaacacagagcgcagcttcttc
ctgcggatgaaatgtaccctcaccagcagggggcgcactgtcaatgtcaaatcatccacc
tggaaggttctccactgctcaggccatgtgcgagtccatgaagccccaactgagcagagc
cccattgggcacaaggagccgcctgtctcctacctggtgctagtctgtgaccccatcccc
cacccctccaacatcgaggcgccattggacaccaagaccttcctcagccgccacacactg
gacatgaagttcacctattgtgacgagaggatcactgagctgatgggctatgatccagag
gacctgataaatcgctctgtgtatgagtactaccatgccttggacgcagactacctcact
aagacccatcacaacttgtttgttaagggccaggtgagcacaggccagtaccgcatgctg
gctaagataggtggctttgtgtgggtggagactcaggccactgttatctacaacaacaag
aactcccagccccagtgtgttgtctctgtcaactttgtgctcagtggcattgaggaggag
aagatggtgctgtctctggagcagactgaggacatgaggtctgtaaagaaggagctggtg
gaggaggaagaggacgagggcccagaggcagaggtgtcccctgtgctcttgaaggaggag
aaggtggatgtgattaagcttttcacccaggcaatggaggaccagccgctggccagcctg
tatgacagactgaaggaggaaccagaggccctcacccttctggccccggccgcaggagac
accatcatctccctggacttcagcagccccgactctgacatcctgctgaaggaggtgcct
ctctacaacgatgtgatgctgccctccaccagtgacaagctggccctgcctcactctatg
ctgccccccaatgagcagcccctgatccccagcgcctcagtggacaccaaggcaggtcca
gactccttcagcaccccaggcagccacagctcaactgagcctgacagcccgctgaacttc
tgttttccaatggactctgacatcagtgctgcactgaaactggacctggtggaaagactg
tttgccatcgacacagaacccaagacacctttcacctcacagggcatggaggacctggac
ctggagatgttggctccatacatccccatggatgatgacttccagctgcgcaccctgtcc
ccagaggagcccccatcgtgtggcccagcccagcccctggagagctctctgtgctctcct
ctgcacctcacccttagctacactgattccccctttagtgccccaagaagccggaaagct
tccccagccccggagctggcagctagcccttgccctgcctccttactcaccatgagggcg
cctccgatggacagagagatgtccctcaggacactggccacccagaactcacagcgcaag
agaaagttgtctctgtctcaggctgtcggaatagtaaatggggcattgctccaggaccct
cctgggccaggtaaaaagctcaaggtgtctgagctgggcagctctgaggctccctccaac
aggaccatactgctcctacctacagacctggcaagctgcctgcttggcatctcctcggag
ggcagcggctcacccttcacccttccacagctgacccggtatgactgtgaggttaatgcc
cccgtggtgggtcgccagcacctgctgcagggcgaggatctgctgtgtgccctggaccaa
gtcaactga
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