Oncorhynchus mykiss (rainbow trout): 110505911
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Entry
110505911 CDS
T07259
Name
(RefSeq) calpain-1 catalytic subunit isoform X1
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04141
Protein processing in endoplasmic reticulum
omy04210
Apoptosis
omy04217
Necroptosis
omy04218
Cellular senescence
omy04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110505911
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
110505911
04217 Necroptosis
110505911
04218 Cellular senescence
110505911
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
110505911
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
omy01002
]
110505911
Enzymes [BR:
omy01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
110505911
Peptidases and inhibitors [BR:
omy01002
]
Cysteine peptidases
Family C2: calpain family
110505911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
CAPN13-like_C_EFh
EF-hand_1
EF-hand_6
EF-hand_7
Motif
Other DBs
NCBI-GeneID:
110505911
NCBI-ProteinID:
XP_021441058
Ensembl:
ENSOMYG00000030158
LinkDB
All DBs
Position
25:40025021..40055257
Genome browser
AA seq
708 aa
AA seq
DB search
MPPPGVCMSIMRERHKKEGVGSLANPEKHSNQDFQQLTQYCLARGVRYIDEMFPPDHNSI
GDGLLSPDNMGRVVWLRPAKMVQYPDFVVDGLSRFDFGQGMVGDCWFLASIGALTFQKHI
LEQVVPLNQSFKEDYCGIFHFRFWRFGRWVDVVIDDKLPTVDGRLIFVHSKTPNEFWPAL
LEKAYAKVCGSYADMNSGTPAEAMMDFTGGVHITFKLTDAPPNLWDLLFRAAKSKSLIGC
GTPQGETSANTVAPNGLVRGHAYTVTGVKQIMSQGMLVNLIRLFNPWGQGEWKGDWSDKS
SMWQTVSPDDRKMCLSVEEDGEFWMTMKHFCEHFVDVDICCLCPDFLDGNSTCHWTPSFH
DGRWVAGTTAGGCLNFPNSFWINPQYRVKIGGLSGVCSETQGDNNMLVSLMQKPDKRNRR
LVKSLHIGFSIFEVSDHFKGQSGKFPASFFNNNVPVAQSKNYLNAREVMEFFRLKPGEYL
IVPSTFKPNETASFILSILSKAETHIHENSNDQDMEDILFSPKTPKPTSTDKFEYNGGDV
DDKRTLFQKYSDEFEEVNAEQLQSCLNENLIQGNVKKTQGFSLESCRSMLALMDTSITGK
LNVAEFLRLWRKVTVYKDIFFRTDEDRSGMLSLSELRNAIMASGIRVGDDMLNLMALRYG
GCSGIISLESFISLVLRMDCMAKIFRQLNDGGVISLQESEWMYISMYT
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcccggtgtgtgtatgagtataatgcgggagcgccacaagaaagagggtgtt
gggagtcttgccaacccagagaaacacagcaaccaagactttcagcagctgacgcaatac
tgtttggccaggggagtgaggtacatcgatgagatgttccccccagaccataactccatt
ggtgatgggctactttcccctgataacatgggcagagtggtgtggttgagaccagcgaaa
atggtacagtatccagattttgtggttgatggactttcaaggtttgactttgggcaagga
atggttggagattgctggtttcttgcttccattggggctttgacgttccagaagcacatc
ctggaacaagtagtacccctaaaccaaagctttaaagaggattactgcggaatattccac
ttcaggttctggaggtttgggaggtgggtggacgttgtgatcgatgacaagctaccaaca
gttgacggcaggctcattttcgttcattcaaaaactcccaatgagttttggcccgccttg
ctggagaaagcctatgccaaggtgtgtggctcctacgcagacatgaattcagggacccct
gcagaggctatgatggacttcactggaggggttcacatcacattcaagctcactgacgct
ccaccaaatctgtgggacctcctgttcagagctgccaagtcaaaatcgctgattgggtgt
ggaacacctcaaggggaaacatcagcaaacacggtggcacccaacggattagtgaggggt
catgcctacaccgtcacaggggttaaacagatcatgagccaaggcatgctagttaatctg
atccgcctcttcaacccctggggccagggagagtggaaaggagactggagcgataagtct
tccatgtggcaaacagtgagtcctgacgatcggaagatgtgtctgtcagtggaagaggat
ggggaattctggatgacgatgaaacatttctgtgagcactttgtagacgtggacatctgc
tgtctgtgccctgattttcttgatggcaactccacttgtcattggaccccttcattccat
gatggcagatgggttgcaggaaccactgctggtggttgcctgaatttcccaaacagcttc
tggataaatccccagtatcgggtgaagattgggggattgagcggtgtctgctctgagaca
cagggcgacaacaacatgttggtgtctctgatgcagaagcctgacaagagaaacagacgc
ctggtcaaaagtctccacatcggcttctccatctttgaggtgtctgaccacttcaaagga
cagagtgggaagtttcctgcctccttcttcaacaacaatgtgcctgtcgcccaatcgaag
aactacctgaatgctcgggaagtgatggagttcttcaggttgaaacctggtgaatacctg
atcgtgccatcaaccttcaaaccaaatgaaaccgcctccttcatcctgtccatcctctcc
aaggcagagacccacatccatgaaaactccaatgaccaagacatggaggatatcctgttt
tccccgaaaacgccaaagcccacatctacagacaaatttgaatacaacggaggagatgtg
gatgacaaaagaactctgtttcagaagtattctgatgagtttgaggaggtgaatgctgaa
cagcttcagagctgtctgaatgaaaatctcatccaaggaaatgtaaagaaaactcaaggc
ttcagcttggagtcctgtcgcagcatgttggccttaatggatacatcaatcactggaaaa
ctgaacgttgctgaatttctgcgtctgtggagaaaagttaccgtgtacaaggacatcttc
ttccgcacagatgaagaccgttctggaatgttgtcattgagtgaactgaggaacgcaatc
atggcttccgggatcagagtgggtgatgacatgttaaacctgatggctctgcgctacggt
ggatgttctggaatcatcagcctggagagtttcatcagcctcgtcctacgcatggactgc
atggccaaaatattcagacaactcaacgatggaggggtcatatctcttcaagagagtgag
tggatgtacatctctatgtatacgtaa
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