Oncorhynchus mykiss (rainbow trout): 110505914
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Entry
110505914 CDS
T07259
Name
(RefSeq) retinitis pigmentosa 1-like 1 protein
KO
K19538
retinitis pigmentosa 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
omy03037
]
110505914
04812 Cytoskeleton proteins [BR:
omy04812
]
110505914
Cilium and associated proteins [BR:
omy03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
110505914
Cytoskeleton proteins [BR:
omy04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
110505914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCX
zf-C2H2_7th_ZNF462
Motif
Other DBs
NCBI-GeneID:
110505914
NCBI-ProteinID:
XP_036818634
LinkDB
All DBs
Position
25:40292623..40310590
Genome browser
AA seq
2933 aa
AA seq
DB search
MQSAPAGLWDPHGPQSKDVSSLPVHTPSASRLSHVIAAPPAKRITFYKSGDAKFAGVRMA
VHKRSFKCFDALLDDLSQKVPLPFGVRTVTTPRGIHSIKHLEQLEDGGCYLCSDRRQAKP
INIELAGKRPALWHHNSRRVPQRPAEDPPPPSAPSHTPTRQRRILLVRNSDPAVRRSVIL
SRRSARSLRVFLEGISELMQCHVRKLYTLEGRKIDSAQSLMTCPGVLVCVGREPFRPLLL
NYVAKHSEEKLPGLGTRSPGSGARSPGTGARSPRNGQGARSRSSVYSEGHGSKRNVNFGL
ETKKTIIHPLSDSSNRSTRFSLSSDKSYPNGLSSQGGKEAALNDDIEKRVLVNKDGSLSV
EMRVRFRLHNDERLQWSTEIKKSPSDSLTNDCCPLREAPPYFLQQGQSESCSDPDSASCV
VEAADYTPKPPQRSLEEPQSHYACCFQRQEYDLWENPAHIQTSKHSHSRVRHTHSSSSSS
SCRSSKLVRRRATHRECSELGRVVHGMVEVCTVSSSCSHSELNLGATDNQGEERPLSSSS
HVLQALQDDVDDLPPSISRCCHSNDPPQALPLTPQPPSPMSTSSRSRKHTPALQGEERGS
KTSSRRSSNSCSCCRGEVTPKADEERVDSSLSKASHASHESRAPSNRIRIPVAPEEGDDE
AEQGGKRAVSVSGGSGGSIGSVGSIGSSVCSHCEGCDQGYDPVSCHSQKSHRSKRSQEEE
EEERSGRGLSGGSDECGFSQRTNKSNCTHFYQEGRAASMMSHMSLPKEGEDTGTEGEVEV
GEKIEEGEKDERAASVLSAKSFSSVKGRTSRTSQKSKASESLADMEEQMEESMEGEVKEG
EVEDGGEQRAASIMSVKSNLSANSSRSHKSTKSRNARAASTSSETPEVTAIETTGEGEEE
EVGEKTEERLESSMSVRSNLSAKSRRSCKSTCSKAEQVLSAYSPEVPATEPEPTGEDEGE
ERATISTSVKSNLSAKSSRSHKSTCSRSIRVVSPKPAASETLVNDPADADAAGALSAKTN
ASAKSRRSCKSTGDDEGEEREARAMSAKTRASIKFSRTHKSACKAASPKPAACETPVNDP
EEKTEEEKTASALSAKTSASVRASRSHKSTCSRSVRAETPVAKDIPAIETTEGDENGSAA
AAGETEERPASAILDNNNASVKSSISHKSTCSKAERAPSSNSPEVPATEPEPTGDDEGEK
RAASATSKSSRSLKSTCSRNVWAETPGTKDIPVITTTGGEEMVDDTTAAGDTEERPPSAI
SAKTSASVKSSRSHKSTCSRKAESQISQPADVPVIETTGRDEVGEEKERADGVMSAKSNA
SAMSRKSNRPTCNGSSRAVSPVAQDIPAIETTGGKEPRDKSTASVKTNRSHKSSSGRRAE
TPTAEQADVNETTGRDEKGEGTERPASAMSTKYSASAKSSRSHKSTCNSGSARAVSPAPK
AADVPAIETKGVDREGEKTEERPACAMSSKSYISAKSSTYHTSNGGNRSTFLHLKKERGE
RGVRPAPSTTGNDLETGSVKSAMSTKPKRNADSSTRPLSTASQANAKSTNQTPPATTETK
EESQSHATSRPASTAAHRDDDVRDHVTEKKAPSVHSKSPAKAEGDSRAASFARSTRSKVK
VQKASEAQDDERPETRASFLQVKGHRVKAQSDTGSVHSVKTSKTDKIVIKGNSKPKSGQA
GNPTSQSINPSEGSRPAIQLGTASVSDSLLSQSLSAADLLRGNMAASRLSSPAGSKVSIP
DSGKSGKSGSSQRRRKLKQEEAELEELGPLCLPKTSPNDIVSDWLRGIPADSGMDNPEDE
MNEGIEETEVKREEEDEKGGETEGQGGEETEEKQEPIETTEMEQENTAETGKQEEEQENT
AEKGQQEEEEEQENTAETGQQEEEEEQENMAETGQQDEEEEQENMAETGQREEEEEQENM
AETGQQEEEEEQENMAETGQEEEEQENMAETGQEEEEEEQENMAETGQQEEEEEQENTAE
TGQQEEEEEQENMAETGQQDEEEEQENMAETGQREEEEEQENMAETGQQEEEEEQENMAE
TGQEEEEQENMAETGQEEEEQENMAETGQQDEEVKKAARQPEEEGEVKEEEEERGEEEEA
AAGEKEKKDKEEEEVKKEEEGEVGAEEEEGECSECADCCPDPAPPNNDISSPCHRHLFLS
RESELPWSCHSSVAVMKVLLNPTLGRCSSLPEISPVYGRRLSSSAKGLLDCLAQLQLIDP
PPSPAAAPGPDRDQRYQEVMDILESLWLSKPDLEKRKEGETEEKERLKDSGVDLSSGSAG
SGGSGKTRPDETAGDITLIAKGEGGEGGGEGETDRGTYGGGEGETDGGGEGETYGGGEGE
TDGGGEEAPSAELLSDAATPDIASQVRSSPGEDESPPESPPGTGEMLQTLERLKTPGSPS
SSDSTAYKSPTDTETDTPEDTPSSGTPPSVQRPLLTKRVSQDPDPVWVLNLLKKLEKQFM
THYVDAMAELKVRWDLDNNVMLDTMITELRDEVKKRIQMSIDRELRKIRGRAGRGPRPPN
MSRESTVTDQRRRRLKVMKVQSVNESDGEQGSGDVSDQRSEDEYCPCDACIRKKAEDKAI
KMEAVVAKAPVMMAFDLRKILQMKKDPESPAPPSPTQGKNNDKLEEEEEEEQVGNLEVVH
EDEEEEERKEDIIPTVIEEDISEKEEEGVTGGEEGEEEGQESHGAESLMGEVEEEIAEEI
GAEEQEEDGVVEGTEDEEEEAGEGETGCESAGEDGVEGVETGEGEELVEGEEEEAGEAEA
GDHEKVGVDEAGDQEEAAGDEETGVAGETGGEEETPEEETEGNVGVSAEDEEEGGEEEVQ
LNAVAEFNPEDEEGEEMEGNREIPLIHQMTRTSVESQPGSMENTDPEPRASDPVSQMCSL
TLIEPNETVSDGHQMASAGEGSGGKGQRRSRSPARTKRRKPKENGIELDVLYL
NT seq
8802 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcggctccagcaggtttgtgggacccccatggaccccagtctaaagatgtctcc
tctctccccgtacacacaccctccgcctctcgcctgtcccatgtgatcgctgctccaccg
gctaagagaatcaccttctacaagagcggcgacgctaagtttgcgggagtgaggatggcc
gtccacaaacgcagcttcaaatgcttcgacgcactactggacgacctgtcgcagaaggtg
cccctgccgtttggagtacgtacggtcaccacccccagaggaatccacagtattaaacat
ctagagcagctggaggacggtgggtgctacctctgctctgacagacggcaggctaaacca
atcaacatagagctggctggcaaacgtcccgccctctggcaccacaacagtcgaagagtg
ccacagcgaccagcagaagaccctcctcctcccagtgctccaagccacaccccaacacgg
cagcgacgcatcctattggtcaggaacagcgaccctgcagtgaggaggagtgtgattctg
agtcgccgctcggcccggagcctccgagtgtttctggagggcatctcggaactgatgcag
tgtcacgtcaggaaattatacacactggagggacgcaagattgacagtgcacagagcctg
atgacgtgtccaggtgtgttggtgtgtgtgggtcgagagcccttcagacctctactcctg
aactatgtagccaagcactctgaggagaaactacctggactggggacgcggtcacctggc
agtggggccaggtctcccggtactggagcccggtcacctcgtaatggtcagggagctcgg
tcacggtctagtgtctacagcgaaggacacggcagcaagaggaacgtgaactttggtctg
gagactaagaagaccatcatccatcctctctcagactcttccaaccgctccacccgcttc
tctctgtcctctgacaagtcctaccctaatggcctcagcagccaaggtggcaaggaggcg
gcgcttaacgatgacatagagaagcgggtactggtgaacaaagacggcagcctgtctgtg
gagatgagggtgcggtttcgtctccataacgacgagaggctccagtggtccacggagatt
aagaagtctccctctgactctctgaccaatgactgctgtcccctcagggaagccccgccc
tacttcctacagcaaggccaatcagaaagctgctcagaccctgactccgcctcctgtgtt
gttgaagctgccgactacacccccaagcctccacagcgctccctggaggagccacagtca
cattatgcctgctgcttccagagacaggagtatgacctttgggagaaccccgcccacatc
cagacttctaagcactcacactccagggttagacacacccactcctcaagctcctcctcc
tcctgccgctccagcaagttggtgaggaggcgtgcgacccacagggagtgctcagagctc
ggaagggttgtccatggaatggtggaggtgtgtacagtcagcagcagctgcagccacagc
gagcttaacctgggtgccacagacaaccagggggaggagcgtcctctgtctagctcctcc
catgtgctccaagcacttcaggacgatgtggatgacctccctcccagcatctcacgctgc
tgccatagcaacgaccccccacaagccctccccttgacaccacagcctcccagccctatg
tctacttcctccaggagcagaaaacacacccctgccctacagggagaggagagggggagc
aaaacctcctcccggcgttctagtaactcgtgctcctgctgcagaggagaagtcacccct
aaggccgacgaggagagagtggacagctcgttgtcgaaggccagccacgcttcccacgaa
tccagagctccctccaatagaatcaggatccctgtggctccagaggagggcgatgatgaa
gctgagcagggtgggaagagggcagtcagcgtctccggtggctcaggggggtccattggg
tcagtggggtctataggctccagtgtatgttctcattgtgaggggtgtgaccaaggttac
gaccctgtgtcctgccactcacagaagtcacataggtcaaagcgatctcaagaagaagag
gaggaggagaggtcagggagaggactctcaggtggctcagatgagtgtggattttctcag
aggaccaacaagtccaactgtacccacttctaccaagagggccgagcagccagcatgatg
tcacacatgtcgctgcccaaggagggagaagatacagggacggagggagaggtagaggtt
ggagagaaaatagaggaaggggagaaagacgagagagcagccagtgtcctctcagccaaa
tccttctcttcggtcaagggcaggacctccagaacctcccagaagtctaaggcctcagaa
tcccttgcagacatggaggaacaaatggaagaatcgatggaaggagaagtgaaagaggga
gaggtagaagatggaggagaacagagagcagcaagcattatgtcagttaaatctaatctc
tcagcaaattccagcagatcccataagtctaccaaaagtcgtaatgctagggctgcttct
accagctctgaaacacctgaagtcactgctattgagacaacaggtgaaggtgaagaggaa
gaagtgggcgagaaaacagaggagaggttagagagctccatgtctgttagatctaacctc
tcagcaaagtctcgtaggtcctgtaagtctacctgcagcaaagcagaacaggtcctttcc
gcctactcaccagaggtaccagctactgaacctgaacctactggagaggatgagggagag
gagagagcaacgatctccacgtctgttaaatctaacctctcagccaagtccagcaggtct
cataagtcaacctgcagtaggagtattagagttgtttctccaaaaccagcagcgagtgaa
actctagtcaacgatccagcagacgcggatgcagcgggtgcattgtcagctaaaaccaat
gcttcagcaaagtcccgtaggtcctgtaagtctacaggagatgatgagggagaggagaga
gaagcaagagccatgtcagctaaaacgagggcttctatcaagttcagcaggacccacaag
tctgcctgtaaagctgcctctccaaagccagccgcatgtgaaactcctgtcaacgatcca
gaggagaaaacagaggaagagaagacagcgagtgcattgtcagctaaaaccagtgcttct
gtcagagctagcaggtctcacaagtctacctgtagtaggagtgttagggctgagacacct
gttgctaaagacatccctgctattgaaacaacagagggagatgagaatgggtctgctgct
gctgccggagaaacagaggagagaccagcgagcgccattttggataacaataatgcctca
gtgaaatctagcatatctcacaagtctacctgcagcaaagcagaacgggccccttcctcc
aactcaccagaggtgccagcgactgagcctgaacctactggagatgatgagggagagaag
agagcagcaagtgccacgtcaaagtccagcaggtccctcaagtctacctgcagtaggaat
gtctgggctgagactccggggactaaagacatccctgttattacgacgacaggaggagag
gagatggttgacgatacaactgctgctggagacacagaggagagaccgccgagcgccatc
tcagctaaaaccagtgcttcagtcaagtccagcaggtctcataaatctacctgcagcagg
aaggctgagagtcaaatatctcaaccagccgatgtccctgttattgaaacaacaggaaga
gacgaggtcggagaggagaaagagagagcagacggtgtcatgtcagctaaatctaacgct
tcagcaatgtcccgcaagtctaacaggcccacttgtaatggaagtagtagagcagtctct
ccagtggctcaagatattcctgctatcgagacgacaggtggaaaagaaccgagagacaaa
tccaccgcctctgtcaagaccaacaggtctcataagtcgtccagtggtaggagggctgaa
actccaactgcagaacaagctgatgttaatgagaccaccggaagggacgagaagggagag
gggacagagagaccagcgagtgccatgtcgactaaatatagtgcttcagcaaagtccagc
aggtctcacaagtccacctgtaatagtggaagtgctagagcggtctctccagcacctaaa
gcagcagacgtccctgccattgaaacaaaaggggttgacagggagggagagaaaacagag
gagagaccagcttgcgccatgtcgtctaaatcttacatctcagctaagtccagtacatat
catacgtctaatggtggtaacagaagtacctttctgcacctgaaaaaagagagaggtgag
agaggtgttagacctgcccccagcactacaggaaatgaccttgagacaggcagtgtgaaa
tctgcaatgagcacaaaacccaaaagaaatgcagattcctccaccagacccctctccaca
gcatcacaggccaatgctaaatccaccaatcagacaccccctgccaccaccgagaccaaa
gaggagtctcaaagtcatgccacgagccgacctgccagcacggctgcacacagagatgat
gatgtcagagatcatgtcacagagaagaaagctcccagcgtacattctaagagccctgct
aaagcagaaggagactcaagagcggcttccttcgcccgctccaccaggtcaaaggtgaaa
gtccagaaggccagcgaggcccaggacgatgagaggccagagacaagggcctccttcctg
caagtgaaaggtcacagggtcaaagctcagagtgacacgggcagcgttcactccgtgaaa
acctccaaaacggataagattgtgataaaagggaattccaaaccaaagtcgggccaagca
ggaaaccctacctcccagtccatcaatccctctgagggctccagacccgccatccagctg
ggtacggccagcgtcagcgatagcctcctctcccagtcgctgtctgcagctgacctgctc
agggggaacatggccgcctcgcgcctctccagccctgcagggtcaaaggttagcatccct
gatagtgggaagagtgggaagagtgggagtagccagaggaggaggaagctcaaacaggaa
gaggctgagctagaggagctgggtcccctctgtctgcccaaaacctcacccaatgacatt
gtcagtgattggctgagaggcatccctgctgacagcggcatggataaccctgaagatgag
atgaacgagggaattgaagagacagaagtaaaaagagaggaagaagacgagaaaggaggg
gaaacagagggacaaggaggagaggagactgaggagaaacaagaaccgattgaaactaca
gagatggagcaggagaacacggctgaaacaggaaaacaggaagaggagcaggagaacacg
gctgaaaaaggacaacaggaagaggaagaggagcaggagaacacggctgaaacaggacaa
caggaagaggaagaggagcaggagaacatggctgaaacaggacaacaggatgaggaagag
gagcaggaaaacatggctgaaacaggacaacgggaagaggaagaggagcaggaaaacatg
gctgaaacaggacaacaggaagaggaagaggagcaggagaacatggctgaaacaggacaa
gaggaagaggagcaggagaacatggctgaaacaggacaagaggaagaggaagaggagcag
gagaacatggctgaaacaggacaacaggaagaggaagaggagcaggagaacacggctgaa
acaggacaacaggaagaggaagaggagcaggagaacatggctgaaacaggacaacaggat
gaggaagaggagcaggaaaacatggctgaaacaggacaacgggaagaggaagaggagcag
gaaaacatggctgaaacaggacaacaggaagaggaagaggagcaggagaacatggctgaa
acaggacaagaggaagaggagcaggagaacatggctgaaacaggacaagaggaagaggag
caggagaacatggctgaaacaggacaacaggatgaggaagtaaagaaggctgcccggcaa
ccagaggaagagggagaggtgaaagaggaggaggaagagaggggagaggaggaggaagca
gcagcgggggagaaagagaagaaagataaagaagaagaggaggtgaaaaaagaagaagag
ggggaggtgggagcagaggaggaggagggagagtgctctgagtgtgctgactgctgccct
gacccagccccgcccaacaatgacatcagttctccttgtcatcgccacctgttcctcagt
agagagtctgagctgccttggagctgccactcatctgtggcagtaatgaaggttttactg
aaccctacactgggccgatgcagctccctacccgagataagtccagtgtacggacgcaga
ctgagctcctctgctaaaggtctgctggactgtctggcccagttgcagctcatcgacccg
cccccttctccagctgcagccccaggccctgaccgggatcagcggtaccaagaggtcatg
gatatactagagtcactgtggctgtctaagcctgacctcgagaagaggaaggagggagag
acagaggagaaggagaggctaaaagattctggtgtggacctgagcagcggctcagcaggg
tctgggggttctgggaagaccagaccagatgaaacagcgggtgacatcactctcatagcg
aagggagaaggaggggaaggaggaggagagggggagacagacagaggaacatatggagga
ggagagggagagacagatggaggaggagagggagagacatatggaggaggagaaggagag
acagatggaggaggagaagaagcaccatcagcagagctgctttcagacgcggctacccca
gacatcgccagccaagtgcggagcagcccaggggaggatgagtcgcccccagagtcgccc
ccagggacaggtgagatgctgcagacccttgagagactcaaaaccccagggagcccatcc
tcttcagacagcacagcctacaaatcccccactgacacagagacagacaccccggaggac
acccccagctcagggacacccccgtcagtccaacgaccgctgctcaccaagcgtgtctcc
caggaccctgacccggtctgggttctcaacctgctgaagaagctggagaaacagttcatg
acccactacgtggacgccatggccgagttaaaggtgcgttgggacctagacaacaatgtg
atgttggacactatgatcactgagctgagagatgaggtgaagaagaggatccagatgagc
attgatcgtgaactgaggaagattcggggacgggcgggccgggggccgcgaccccctaac
atgtcccgggagtcaaccgtaacagaccagaggaggcggaggttgaaggtcatgaaggtc
cagtcggtaaacgagagtgatggagagcagggttcaggcgatgttagcgaccagcgcagc
gaggacgagtactgtccctgcgacgcctgcatacggaaaaaggcggaggacaaggcaatc
aaaatggaggctgtggttgccaaggcgccagtgatgatggcgtttgatctgcgtaagatc
ctgcagatgaagaaagacccagagtctccggcgccccctagccccacacaggggaagaac
aatgacaaactggaagaggaggaggaggaggaacaggttgggaatctagaggtggtacac
gaagacgaggaagaggaggagagaaaggaggatattataccaactgttatagaggaagat
atctctgagaaggaagaggaaggagtgactgggggagaggagggagaggaggagggacag
gagagtcacggagctgagtctctgatgggtgaagtagaggaggaaatagctgaggagata
ggggctgaagaacaggaggaggatggagtggtagagggaactgaggatgaggaggaagag
gcaggggaaggagagacggggtgtgaaagtgcaggagaagatggtgtggagggggtggag
actggagagggggaggagttagtagaaggggaggaggaagaagcaggggaagctgaagca
ggagatcatgaaaaagttggagtagatgaagcaggagatcaggaggaagctgcaggagat
gaagagaccggagtagcgggagagacagggggagaggaggagactcctgaggaagaaaca
gagggtaatgtgggcgtgtcagcagaggatgaggaagagggaggagaggaggaggtgcag
ttgaatgctgtggcggagtttaatcctgaagacgaggagggtgaggagatggagggaaat
agagaaatccctctgatccaccagatgaccagaacctctgtggagtcccagccaggatca
atggagaacacagacccggagcccagggcatcagacccagtttcacaaatgtgctcctta
accctgatagagcccaatgaaactgtctctgatggacaccagatggcatctgcgggggaa
gggtcaggggggaaaggccagaggaggagccgatctccagccagaaccaaacgcaggaaa
ccaaaagagaacggcatagaactggatgtcctatatctgtaa
DBGET
integrated database retrieval system
