Oncorhynchus mykiss (rainbow trout): 110505978
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Entry
110505978 CDS
T07259
Symbol
alms1
Name
(RefSeq) uncharacterized protein alms1 isoform X1
KO
K16741
alstrom syndrome protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
omy03036
]
110505978 (alms1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
omy03037
]
110505978 (alms1)
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
110505978 (alms1)
Cilium and associated proteins [BR:
omy03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
110505978 (alms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALMS_motif
Motif
Other DBs
NCBI-GeneID:
110505978
NCBI-ProteinID:
XP_036818479
Ensembl:
ENSOMYG00000024795
LinkDB
All DBs
Position
25:complement(45052287..45115163)
Genome browser
AA seq
2895 aa
AA seq
DB search
MEPQEPTSPADEADVNRFQRTESWFHLPAEEDRSQFLGLEFQDSRLSPALALLPEYDFSG
YSLFQQTTDLEFAPLRGSPDVSVASERFLIPQAKKGSSGVVQPSVPQHSSLSQHPLAYNS
TLSEHPLGHTSTLSRSEERASSCCSLSEHSMSPGDGLGQPGEDRYPTTVSDNEGQKTHRS
GTRTSLLDPDRPLAVLPDDNASFLSGDIPVRKLLDLLQKDVGMPSGSSSAVSSASETSLK
RTNFFGGESRSDSCVSKPDGLREERDVSQRALPDVSPELLPDVSPELLPDVSPELLPDVS
PPVTGRREGPQGGASVSPEKTEKLKSKQSSRMSEISNITIRSLSSQPDESSNASRRQLCS
ELERSLDSEPGAETQGGTSRGPIPSLHSEVNTPDIVTNTPNVSTTGSAKGRLSVTRGLRA
SVLGPGAGVGPQFSAGFSVERGHRERDLWSSGNQTGTEPDVSFLSLLPQPVSQSTPGVFL
HAPVRSSTKLSALTFNMEVSQRSSGSRVSPQPAVDTLPDRATPVRDPPLPARETVQEPSG
RSHHSLPSLNYLQKVDAWKANQSSNKMSFYDNLSLQGFSGVSPKQKAYDAVSDSLTRMLT
QPRLGNQTLSMCESGPSSPSRGEAAGSGLPEREDTAGPVGGPSPMGRSQSHSSLNTVVTS
IQRAQHAQTHTDQDSSQTQPEEESATGQPRELERSRGGSGSDRVQSGGGPEQPSGAPTEP
SPFISLGRFNNVSSKRDVLSSSRDSDHSGQNFEVPIRAASSSVVSLEVDNYAPYWTSKPS
SPHRERELNIDERIPMYLHNLGIDQSPSTILNPFGPRGPIREPEFSPTDLCTIKGSTATG
TPTKSTQPSEGDSPHKGEFSRSSLLSVASSMSLPLSVDSLHLHPIRSQAENTRSCLSPSP
GPDRDRSPSQGSLRMALCPLDISVDNTVLQDSQQDPRCLQASSPAPQSTQPLDLHIYQLP
APESKNKKYPGLLPDLQSTEQHQRDSRVNVSTQAAIELAGGLESSADSLSQYRDRVKNSL
SHYKDEDRDSLYRNRDMDRDVLSQYRDSAVASCPQVNTTIDRSNPDDSFVGSQTLQDIRL
LLGRAENIVSGGSSSSSASSHLLHSDDDILLLSLRRKMEVFQDSSFTSSSGGAGVGDPRS
HSSLLWARSSSDSMLPAVRKRDKERESSAYNGEGHVRLTREAEHQSTPAREESARLLQDR
EHHGRPRDSSEDGEHHGRPGDSSEDREHHGRSHDSSEDQEHHGRSHDSSEDREHYGRPPQ
DSSEHREHYGRPPQDSSEHREHYGRPPQDISGSSSTFLLTKSVRRAEPEGCSAGLSDTRI
GPVLLSVMPVSQPGPSLGDAGVGKLQQAPTTTVGGGDPEVQMAPEEGSSSSSSSSCPVGS
EQGCGGLSEPAHGGDQGGDALSDGGSSSSSLAARVARLLQNESPATVASLSSRASTATAD
LEESRAREWLRLKVSGQHCETLELNTEDRQRIEEIKREILFKHPLQNPRSTDTDSSTASS
LVGPGGQPPSLPQPEEQLVGEKKQFRALKAAEDCLSHQLQQLSRNPFDDSVELRTPLRQD
LEDRVRQIALREGLYVLPRTHPPPLTSITIATSRRSPLPEPLQVSQFTLEGVSQPTVQGW
LPQTRPQQQGRESTTTSTHCSMSRDTSTMTGSQANSSSLYPRDRKTRLGQEPGQEPGQEP
GQEPGQEQLPGRDQENPFTGPPHSAAPLPLTPVMYGQISRAHPDEGRPGSIMGSGADWVS
GAWTTRTGQVSHLHITLSPGPKGAEERSRRLLSFAPVRHSSAVSSSVDEDESLGYAPDPA
PANKTGSQENRGPIWRQGQETADASVQITTATATSTFPQCFTPPQRLTGTGPSRQAALTV
LLPYKPHGSEEMFYVPQTHPEPQLSPIRSDSTMESSHPGSDDAVPPRFNIEILGSRGQQV
DQVVDRGVNIKHTEGIYSKRQRLGENYSMERTGTTVPNDEGQPLVDQRTPQSKCFSHVTG
GLTRVPAIPITTTRGPAVPTTTTRGPAIPITTTIGPAVPITTTIGPAVPTTTTRGPAVPT
TTTRGPAIPITTTIGPAVPITTTIGPAVPTTTTRGPAVPTTTTRGPAIPITTTRGPAIPT
TTTRGPAIPTTTTRGPAIPTTTTRGPAIPTTTTRGPAIPTTTTRGPAIPITTTRGPAIPT
TTTRGPAIPTTTTRGPAIPTTTTRGPSAAMRDHGTSITTSTHTQGVPDTDHPVQPSLRCS
LGVGEEELEVFQPLHVEMDYSSMDLHHHFPKTHHLHMDHQISNAHLVRTSAPHPGMEREP
GRRDHSLAQRSGSTLDQLWRRFSERWSLEEARPTNEREASLLERLERLSRLIHSTGTSTP
PEPTQQTDTTEQEGGGRRRERKSSRKEEERRRGGVEEGRSRREESSSGRSDPHAKANQAK
ASVPRQAWEQQDEEPQPAEGEDSSSPSHGPAHSFSPSHLPARSQYLCPAERERSGSVSGE
TSSSMSTIDTARLVRAFGAHRVRGLNTQGTSHRTNHRTSHSLSKLYSTILQQRQSKEQRR
GRPRETPHIPPVPSESTGTDNSVIPADSASSTSTYTLPSHRGPSHSKKAVKHVNKGVQAG
DLEIVSNGTRRHTRDVGTTFPSPGSARGARVLPSSHSGSKRVRAGDRSPPKTQRKRKMSQ
PSARPYYPQGVSWYIPAEDLRAEGRKENRPEQQPPQGPAWFEPYSRTTRPWREPLRQRQI
QDRERLTDRLQTNQLEADRDRPSERQHTKHSIITPPGPEPTGNAPAALVRISLQEALELR
RPEFVSRSRERVKRLVLQVEERKLQVVFSRERNKLFNQPRRPGRLSQPAGTAVFQRAVPK
KEMVQRSRQQSGQEQEAGFNNRGARRRRIYEQLPEVQRRREEEKRREEYRSYRLNAQLYN
KRITNRVLGRQTPWQ
NT seq
8688 nt
NT seq
+upstream
nt +downstream
nt
atggagcctcaggagccaacttctcccgcagacgaggcagatgtaaacagatttcagagg
actgagtcatggttccatctcccagcagaagaggacaggagtcagttcctgggtctggaa
tttcaggacagtcgtctgtcacctgcccttgctctgctaccagagtatgacttctcggga
tactctctcttccaacaaacaacagacttagagtttgcccctttaagggggtctccagac
gtgtctgtagcctccgagaggtttctgataccacaggccaagaagggcagcagtggcgtt
gtccagccgtctgtccctcagcattcctctctgtcccagcatcctctggcctacaactcc
accctgtctgagcaccctctcggtcacacctccaccctgtctcggtcagaggagagggcc
agtagctgctgctcgctctccgaacacagcatgtcccctggtgacgggttgggacaacca
ggggaggaccgctacccaaccaccgtcagtgataacgaggggcagaagactcatcgttct
gggacacgtaccagtctccttgacccagacagacctctggccgtgctccctgacgacaac
gcttcgttcctcagcggggacatccctgtcagaaagctgctggatctgctccagaaggac
gttggcatgcccagcggtagcagcagtgccgtctcctctgcctctgagacctctctcaag
aggactaacttctttgggggagaatccaggagtgacagctgtgtttccaaaccagatggc
ttgagagaagagagggatgtgagccaaagagcgctgcctgacgtctcacctgagctgctg
cctgacgtctcacctgagctgctgcctgacgtctcacctgagctgctgcctgacgtctca
ccgccagtcacagggagaagagaaggccctcaaggaggagcctccgtctcacctgagaag
acggagaaactcaaaagtaaacagtcttcacggatgtctgaaatttccaacatcaccatc
cgttccctgagcagccagccggatgaaagcagtaatgcgtcccgcaggcagctctgctcg
gagctagagaggagtctggactctgagcctggagcagagacccagggaggtaccagccgt
gggcccataccctccttacacagtgaagtcaacacacctgacattgtcaccaatacacct
aatgtttcaaccactggatccgccaaagggaggttgagcgtgaccagagggctacgggcc
agtgtgttagggccaggggctggggtcgggccccagttttcagcagggttcagtgtggag
cgaggccatagggagagagacctctggtcctcaggcaaccagacaggcacagaaccagac
gtctcgttcctgagccttctgccccagcccgtgtcccagtccaccccaggtgtgttcctc
cacgctccagtcagatccagcactaagctgtctgccctcacctttaacatggaggtctct
cagcgctcctcaggctccagagtctcgccccagcctgctgtagacaccctgcctgataga
gccacccctgtccgggacccccctctgcctgccagagagacagtacaggagccctcggga
agaagccaccattctctccccagtcttaactacctacagaaggttgatgcctggaaggcc
aaccaaagttcaaacaagatgtcgttctatgacaacttgtctcttcagggcttctccggg
gtctctcccaagcagaaggcctacgatgcagtctctgactctctgacccgtatgttgact
caaccacggctgggcaaccagaccctcagcatgtgtgaatctggaccctcctcccctagc
agaggggaggcagcaggtagtggtcttcctgagagagaggacacagcggggcctgtagga
gggccatcccccatgggcaggtctcagtcccactcctccctcaacacagtggtcacgtct
atccagagagctcagcatgcacagacacacactgaccaggacagcagccagacacagcca
gaggaggagagtgctacagggcagcccagggagttggagaggagccggggagggtcaggg
tcagacagggttcagtcaggaggtggacctgaacagcccagtggtgctccaaccgagccc
tctcccttcatcagcctgggacgcttcaataacgtgtcatcaaagcgagacgtcctctcc
agctcccgggacagtgaccacagcgggcagaactttgaggtgcccatcagggctgcttct
tcttctgtggtcagtctggaggtggataactatgccccgtactggacctccaaaccatcc
tcaccacacagggagagggagctcaacattgacgaaaggattccgatgtaccttcacaac
cttgggatcgaccaatctccttctacgatcctcaatccctttggacctcgagggccaatc
agagagccagagttctctcccactgatctgtgcaccataaagggatccacagccactggc
acgccaaccaagagcacacagccttctgaaggcgacagccctcataaaggagagttctcc
aggtccagcctgctgtctgtggcctcaagcatgtctctacctctcagtgtggacagcctc
catctccatcccataaggagccaggcagagaacaccaggagctgcctgtccccctctccg
ggaccagacagagacaggtctcccagccagggcagtctgaggatggccctctgccccctg
gatatctcagtggataacacagtgctccaggactcccagcaggatcctcgctgcctccaa
gcatcctcccctgcaccacagtccacccagccccttgacctccacatctaccagctccct
gcaccagagtccaaaaataaaaagtaccctggcttgcttccggacctacagtccactgag
caacatcagagagacagcagagtgaatgtctctacccaggctgctatagagctggcaggg
gggcttgagtccagtgctgacagcttatctcagtacagagacagggtcaaaaacagctta
tctcactacaaagatgaagacagagacagtttatacaggaacagagacatggacagagac
gtcttgtctcagtacagagacagtgcagtagcgtcctgtccccaggttaacaccaccatt
gatcgtagtaatcctgatgattccttcgtaggctcccagactctgcaggacattaggctt
ctgctgggccgggctgaaaacattgtgtctggtgggtcctcctcctctagcgcctcctcc
cacctcctccactctgacgacgacatcctgctcctctctctcaggaggaagatggaggta
ttccaggactcctccttcacctcctcctctggtggggccggggtgggggacccaaggagt
cactcctccttgctttgggcccgctcctcctctgactccatgctgccggcagttaggaag
agggataaggagagggagagctctgcctacaacggggaaggtcatgtcaggctaaccaga
gaagcagagcatcagtccacacccgccagagaggagtctgcgagactactacaggacaga
gagcatcatggaagaccaagggacagttctgaagacggagagcatcatggaagaccaggt
gacagttctgaagacagagagcatcatgggagatcacatgacagttctgaagaccaagag
catcatgggagatcacatgacagttctgaagacagagagcattatgggagaccaccacag
gacagttctgagcacagagagcattatgggagaccaccacaggacagttctgagcacaga
gagcattatgggagaccaccacaggacatctctggcagtagctctactttcctcctgacc
aaatctgtgcggagggcggagcctgagggctgcagtgctggcctctcggacacgcggatt
ggccctgtgctgttgtcagttatgccggtcagccaacctggtccctcattgggtgatgct
ggcgttggcaagctgcagcaggctccaacaacaacagtgggaggaggagacccagaagtg
cagatggctccagaagagggaagctcttcgtcctcttcgtcctcctgtcccgtgggctct
gagcaggggtgtggaggtctgtctgagccggcccacggtggggatcagggtggagatgct
ctgagtgatggtggcagcagcagcagttctctagcagccagggtagccaggctgctccag
aatgagtccccagccacggtggcgtccctgtccagccgagccagtaccgccacagcagac
ctggaggaaagcagagccagagagtggctgaggctgaaggtgtcggggcagcactgtgaa
actctggagctcaacacggaggatagacaacgcatagaggagatcaagagagagatactc
tttaaacacccactacagaacccgaggagcacggacacggacagcagtactgcgtccagc
cttgtaggtccagggggccagcctccctccctaccccagcctgaggagcagttggttggg
gagaagaagcagttcagggccctgaaggcagcagaggactgtctgtcccaccagctacag
cagctgagcaggaacccgtttgacgacagcgttgagctgcgtacccctctaaggcaggac
ctagaggaccgggtcagacagatcgccctccgagaggggttatacgtcctccctagaacg
caccctccacccctcacctccatcaccattgccacctcccgccgctcccccctccccgag
cctctacaggtgtcccagttcaccttagaaggtgtctcccaacccacagtgcaggggtgg
ctacctcagacacggccccagcagcaggggagggagagcaccaccacctcgacacactgc
tccatgtccagagacacatccaccatgactggatcacaggccaacagcagcagtctgtac
cccagagacagaaagacacgcctgggccaggagccgggacaggagccgggacaggagccg
ggacaggagccgggacaggagcagctgcctggtagagaccaagagaacccctttactggt
cctccccactctgcagctcctctccctctgaccccagtcatgtacgggcagatttcccgg
gctcaccccgacgaaggacgtcctgggtccatcatgggttctggagcagactgggtctct
ggagcttggaccaccaggacaggtcaggtctcccacctccacatcaccctctcccctggt
ccgaaaggggctgaagagaggtcccggagacttctgtcctttgctcctgtcagacactcc
tctgccgtctccagcagtgttgacgaagacgagagcctaggttacgcccccgatcctgct
ccggccaataagacggggtcgcaggagaacagagggccaatttggagacaggggcaggag
acggccgacgcctcagtccagatcaccacggcaacggcaacctccaccttcccacaatgc
ttcacacctccccagaggctgactggtaccggcccgtctaggcaggcggcgctgacagtt
ctgttgccgtataaaccacacggtagtgaggagatgttctacgtaccccagacgcatcct
gagccacagctttcccccatacgatctgactccaccatggagagttcccacccaggctcg
gacgacgcggtgccccctcgcttcaacatagagatcctggggtcacgagggcagcaggtg
gaccaggtggtggacagaggggtaaacatcaaacacacagagggtatctacagcaagaga
caaagactgggagaaaactacagtatggagaggacaggtaccaccgtgccaaacgatgaa
ggccaaccattggttgaccagcgtactccacagtcaaaatgcttctctcatgtcacagga
gggttaaccagagtacctgctataccaatcacaaccactagaggacctgctgtaccaacc
accaccactagaggtcctgctataccaatcaccaccactataggacctgctgtaccaatc
accaccactataggacctgctgtaccaaccaccaccactagaggacctgctgtaccaacc
accaccactagaggacctgctataccaatcaccaccactataggacctgctgtaccaatc
accaccactataggacctgctgtaccaaccaccaccactagaggacctgctgtaccaacc
accaccactagaggacctgctataccaatcaccaccactagaggacctgctataccaacc
accaccactagaggacctgctataccaaccaccaccactagaggacctgctataccaacc
accaccactagaggacctgctataccaaccaccaccactagaggacctgctataccaacc
accaccactagaggacctgctataccaatcaccaccactagaggacctgctataccaacc
accaccactagaggacctgctataccaaccaccaccactagaggacctgctataccaacc
accaccactagaggaccatctgcggccatgagagaccatggaacctcaatcaccacctcc
acacacacccagggtgtcccagacacagaccaccctgtccagccctccctacgctgcagc
ctgggggtgggggaagaggagctggaggtgtttcagcctctgcatgtagagatggactat
agttccatggacctccaccatcacttccccaaaacccaccatctccacatggaccaccag
atctccaacgctcaccttgtccgaacctcagcccctcacccagggatggagcgagagccg
gggaggcgggaccacagtctagcccagcggagtggcagcactctggaccaactgtggcgc
aggttcagtgagaggtggagcctggaggaggcccggcccaccaatgagagagaggcgtcc
ctgctggagcggctggagcgtctgtcccgcctcatccacagcaccgggacctccaccccg
ccagagccaacgcagcagactgataccacagaacaagagggaggagggaggagaagagaa
cgaaagagtagtaggaaggaggaagagaggagaagaggaggtgtggaggaagggaggagt
aggagagaggagagcagcagtggccggagcgatccccatgctaaagctaaccaggctaag
gctagtgttccccgccaggcctgggagcagcaggatgaggagccccagcccgcagagggg
gaggacagctctagcccctcccatggtccggcccacagctttagcccctcccacctcccg
gcccgcagccaatacctgtgtccagcagagagagagaggtctgggagcgtctcaggggag
accagcagctccatgtcaacaatagacacagcccgactggtgagggccttcggagcccac
agggtcagagggctgaatacacaagggaccagccacaggaccaatcacaggaccagtcac
agccttagtaaactgtacagcaccatcctccagcagaggcagagcaaggagcagaggaga
gggaggcccagagagactcctcatatccctccagtcccctcagagtctactggcactgat
aactctgtaattccagctgactctgcatcttcaaccagcacctacaccctcccctcgcat
cgtggcccctcccactccaagaaggcagtcaaacatgtcaacaaaggcgtacaggcaggg
gacctggagattgtgagtaacggaacacgtcgtcacacccgagacgtcggcacaacgttc
ccctcgccaggctcagccaggggtgccagggtgctcccctcctcacactctggtagcaag
agggttagagctggggacaggagccctcctaaaacgcagaggaagaggaagatgagccaa
ccctctgccaggccctactaccctcaaggtgtatcgtggtacatccctgctgaggacctg
agagctgagggcaggaaggagaacaggccggagcagcagcctccccagggcccggcctgg
tttgaaccctacagcagaaccacccggccctggagagaaccgctcagacagagacaaata
caggacagggagagactgacagacagactacagaccaatcagctggaggctgaccgcgac
agacccagtgagaggcagcacaccaagcacagcatcatcacccctcctgggcctgaaccc
actggcaacgcccccgccgccctggtccgcatctctctccaggaggctctggagctgcgt
cggccagagtttgtgtctcggtctcgggagagggtgaagcgtctggtgctgcaggtagag
gagaggaagctgcaggtcgtcttcagcagagagagaaacaagctcttcaaccaacccaga
agaccagggagactgtcccaacccgcaggcacagcggtgtttcaaagagccgttcccaag
aaggagatggtgcaacgatctagacaacagtcaggtcaggaacaggaagcaggctttaac
aacaggggggccaggaggaggaggatatatgagcagctgccagaggttcagaggaggaga
gaggaggagaagaggagagaggagtaccgctcttacagactcaacgctcagctctacaac
aagagaatcaccaacagagtcctgggcagacaaacaccctggcagtga
DBGET
integrated database retrieval system
