Oncorhynchus mykiss (rainbow trout): 110506142
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Entry
110506142 CDS
T07259
Name
(RefSeq) aggrecan core protein isoform X1
KO
K06792
aggrecan 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
omy00535
]
110506142
00536 Glycosaminoglycan binding proteins [BR:
omy00536
]
110506142
04091 Lectins [BR:
omy04091
]
110506142
Proteoglycans [BR:
omy00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
110506142
Glycosaminoglycan binding proteins [BR:
omy00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
110506142
Lectins [BR:
omy04091
]
C-Type lectins
Lecticans
110506142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
EGF
V-set
hEGF
EGF_TEN
ig
I-set
Motif
Other DBs
NCBI-GeneID:
110506142
NCBI-ProteinID:
XP_036819742
LinkDB
All DBs
Position
26:complement(41827548..41862932)
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AA seq
1737 aa
AA seq
DB search
MTRWIVLLCVCLSVTSATFNNYQQISSYEQHSFLDPEDTLSVSVPLELPQRPLLGSTLVL
PCYFQDHTVHDPGAPTIAPLSHRIKWSRITKERVSVILVAMDGEVKVEEDYLDRVHMVGY
PQTPTDASIKITELRSNDTGTYRCEVQHGIEDNHDTVDVLVQGIVFHYRAITTRYTLTFE
KAKAACIQNSAVIATPEQLQAAYDDGFHQCDAGWLSDQTVRYPIHDPRENCYGDKDEFPG
VRTYGVRDVNETYDVYCFAEKMTGSVFYSGSVAKFTYSEAEEQCSKQGALLATTGQLYLA
WQAGLDVCNAGWLGDRSVRYPINVRRPQCGGGLLGVRTVYLHVNQTGYPLPESRYDAYCY
TETDEEGSGMVVPTEAGSGVLSVATVTQGPPEVFFRNMTTESEALGEDLATQKPTSVDFT
FGTELPLPQPPSVTELPQPPSVTELPQPPSVTELPLPQPPSVTELPQPPSVTELPQPPSV
TELPLPQPPSVTELVVDVVGRVTARPDVGSEMGEVSRSGYLFSATGVVFHYRAGSSRYAF
TYVEAQLACQSVGASIATPEQLQAAYEAGLNQCDAGWLLDQTVRYPIVSPLEKCSGDLET
LPGVRTYGLRPADEHYDVYCYVDRLRGDVFHAGSSDGFTYDGALSHCQELNATLASTGQL
YAAWRQGLDNCRAGWLIDRSVRYPITNPRAACGAGKAGVYTVYTHNNQTGYPDLYSRYDA
YCFKVDILFVANETGLNITEIEEALVNLTSITDLLRPVLPSITPPISVESSGSGSGASGA
SGSSGDLSGDHSGELPHSGDLSGSGDLSGSGSAEIPSGSSGLSSGDAFGSGLSGDGSGIT
VTSGRGSVLSGLGSGGPQEAGEGITVTFSSGSGSVLSGLGSGGPQEAGEGITVTFSSGSG
SVLSGLGSGGPQEAGEGITGILTFPTEMGLGMFSGSGFLSGSGSGSGVSSEESGSSSDSS
SSSGESGELSGMSFGSSSSSSEEYSGFPSGFFPSGGSGGHSGEESGSGDTQVLLIDGKLV
EVSTSHTHKEKELGGGGLEFSGSGSGSSGSGFFPSVTFLGSGFTDLTGSASGEQEASGSL
HYGSGSGDISGSASGSSGSGFFPGVTFLGSGFTDLTGSASGEQEASGSLHYGSRSGDNSG
SDSGSSGSGSFPGVTFLGSGFTDLTGSASGEQEASGSLHYSSGSGDISGSASGSSGSGFF
PGVTFLGSGFTDLTGSASGEQEASGSLHYGSKSGDNSGSDSGSSGSGSFPGVTFLGSGFT
DLTGSASGEQEASGSLHNGYGAGRGGYASGFGTSGFPSGDMSGISRSSTSDEEDSAVTFL
TNDFMTEVSKATTVSMELGAGPVQFSRQGSGSHTWSGADHPTSGVSSGAHSGDLLPVVLS
SPPSNRELMEGTEGPEEAMAGRAELGETTSEFYVTFAPDLAPAGLAAPAISLQTPAVMEE
PSSEEGIPNPCDPNPCGAGSCSVEDGVGLCKCLPGKVGEGCQYEVDVCHSNPCANGATCV
ENADSYKCLCLPSYGGDRCEIDEQDCEEGWTKFQGNCYLHFPERETWLDAEQRCRDLSAH
LVSIITPEEQHFVNSNGQDYQWIGLNDKTVENDFRWIDGTPLQFENWRPNQPDNYFNSGE
DCVVMIWHENGQWNDVPCNYHLPFTCKTGPVYCGAPPEVENATMFGSRREQYTVGSIIRY
QCNPGLLQRHLPVVRCMADGQWEKPQVECLGAVPSPSNRIQRRSIRRRGESTSSKRH
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atgaccaggtggattgtattactttgtgtttgtctgtccgtcacctcggcaacattcaac
aattatcagcaaatcagcagctatgagcagcactcctttctggaccctgaggacacactg
agtgtgagcgtccccctggagctgcctcagcgccctctactgggcagcaccttggtacta
ccctgttacttccaggaccacaccgtccacgaccccggcgcccccaccattgcccccctg
tctcaccgcatcaaatggagccgcatcaccaaggagcgtgtctctgtcatcctggtggcc
atggacggagaggtcaaggtggaggaggactatctggaccgggtccacatggtgggctac
ccccagacccccactgacgccagcatcaagatcacagagttgaggtccaacgacaccggc
acctaccgatgtgaggtccagcacggcatcgaggacaaccatgacactgtggacgtcctg
gttcaaggtatcgtgtttcactaccgggccatcacgacacgctacacactgacctttgag
aaggccaaggcagcctgtatccagaacagtgctgtgatcgcgaccccagagcagctccag
gccgcgtacgatgacggcttccaccagtgtgatgccggctggctctctgaccagactgtc
aggtacccaatccatgatccacgtgagaattgctatggcgacaaagacgagttccccggg
gtgcgaacctacggagtgagagatgtcaacgagacttacgacgtgtactgttttgccgag
aagatgacaggcagtgtgttctactctggctctgtggctaagttcacctactctgaggct
gaggaacagtgtagtaagcagggggccctgttggccaccacaggacagctgtacctggcc
tggcaggctggtctggatgtgtgcaatgcaggctggctaggagacaggagcgtccgctac
cccatcaatgtccggaggccgcagtgcggagggggtctgctgggggtacggaccgtgtac
ctccacgtcaaccagacggggtaccccctccccgaatcccgctatgatgcctactgctac
acagaaacggacgaggagggctcaggcatggtggtgcccaccgaggcgggcagcggcgtg
ctgagcgttgccacggtgacccagggtcctcccgaggtgttcttcaggaacatgaccaca
gagagtgaggcgctgggcgaggacctggccacccagaaacccactagtgtggacttcacc
ttcggcactgagttgcccctgccacagccgcccagtgtcaccgagctgccacagccgccc
agtgtcaccgagctgccacagccgcccagtgtcaccgagctgcccctaccacagccgccc
agtgtcaccgagctgccacagccgcccagtgtcaccgagctgccacagccgcccagtgtc
accgagctgcccctaccacagccgcccagtgtgacagagttggttgtggatgtggtgggg
agagtaacggccaggccggatgtggggagtgagatgggcgaagtgagcagatcaggatat
ttattttctgctacaggcgtggtgtttcactaccgtgctggatctagtcgctatgccttc
acctacgtggaggcccagctggcctgtcagagtgttggagcctccatcgccaccccagag
cagctccaggctgcctatgaggccggcctcaaccagtgtgatgcaggctggcttctggat
cagaccgtcaggtatcccatcgtgtctcctctggagaagtgctctggggatctggagact
ttaccaggagtgaggacctatggactgaggcccgctgacgaacactacgatgtgtactgc
tacgtggacagactcaggggtgatgtgttccatgctggctccagtgatggcttcacctat
gacggtgctctgtctcactgtcaggagctgaacgctaccctggcctctactggccagctc
tacgccgcctggagacaaggcttggataattgccgcgcaggttggctaatcgaccggagt
gtccggtaccccatcaccaacccccgggcggcgtgtggtgcagggaaggcaggggtgtac
acagtatacacccacaacaaccagacgggatacccagacctgtattccagatatgacgcc
tactgcttcaaagtggacatcttgtttgtcgccaatgaaactggattgaacatcacagag
atagaagaggctttggttaacctcacatccatcactgatttgctgaggcctgtcctgcct
tccatcactcctcccatctctgtggagtcctcaggttctggttccggggcctctggggcg
agtggatcctccggagatctctctggtgatcactccggtgaactgcctcattccggggat
ctgtccgggtcaggtgatctttcaggcagcggaagcgcagagattcccagcggatcatct
ggtctgagtagtggagatgcgttcggctcggggctgagtggagacggatcgggaataacg
gtcacttcagggaggggcagtgttttatccggtttgggctctgggggtcctcaggaggct
ggagagggaataacggtcaccttctcttcagggagtggcagcgttttatccggtttgggc
tctgggggtcctcaggaggctggagagggaataacggtcaccttctcttcagggagtggc
agcgttttatccggtttgggctctgggggtcctcaggaggctggagagggaatcactggg
atcctcaccttccccacggaaatgggattgggaatgttcagtggcagtgggttcctgtcg
ggatcgggaagtggctccggtgtcagttctgaggagagcggctcttcgtctgacagctcc
agcagctctggggaaagtggggagttgtctggaatgtcgttcggctccagctctagttcc
agtgaggagtattccggatttccctcaggattctttccctcaggaggctccggtggtcat
tcgggagaggagtcaggaagcggagacactcaggtcctgctgatcgatggtaaactggtg
gaggtttccacctctcacacacacaaagagaaggagctgggtggagggggcctggaattc
agcggctccggatctggcagcagtggctcagggttcttcccgagtgtgaccttcttgggg
tcagggtttaccgacctcacagggtcagcctcaggggaacaggaggcctctgggtctctc
cactacggctccggaagtggtgatatcagcggttcggcctcgggcagcagcggctcaggg
ttcttcccgggtgtgaccttcttggggtcagggtttactgaccttacggggtcagcctca
ggggaacaggaggcctcggggtctctccactacggctccagaagtggtgataacagcggt
tcggactcgggcagcagtggctcagggtccttcccgggtgtgaccttcttggggtcaggg
tttaccgacctcacggggtcagcctcaggagaacaggaggcctcggggtctctccactac
agctccggaagtggtgatatcagcggttcggcctcgggcagcagcggctcagggttcttc
ccgggtgtgaccttcttggggtcagggtttactgaccttacggggtcagcctcaggggaa
caggaggcctcggggtctctccactacggctccaaaagtggtgataacagcggttcggac
tcgggcagcagtggctcagggtccttcccgggtgtgaccttcttggggtcagggtttact
gacctcacagggtcagcctcaggggaacaggaggcctcggggtctctccacaacggatac
ggagcgggaagaggtggatacgcatcagggttcggaacgtcgggcttcccatccggggac
atgtctggaatctccagatcctccaccagcgatgaggaggacagcgctgtcaccttcctg
actaatgacttcatgacagaggtttccaaggcgaccacggtttccatggagctgggggct
gggccagtgcagttcagcaggcagggaagtgggtcccacacatggagcggtgctgaccac
ccaaccagcggtgtctcatctggggcacactctggagatctgctccctgtggtgctgtcc
tctccgcccagcaacagggagcttatggagggcacagaagggccagaggaggccatggct
ggcagggctgagctgggggagaccaccagcgagttttacgttacctttgcccccgacctt
gctcctgccggattggctgccccagccatctccctgcagacccctgccgtcatggaggag
ccatcctcagaggagggtatccctaacccatgtgaccctaacccgtgtggtgctgggtca
tgctcagtggaggatggtgttgggttgtgcaagtgtctgcccgggaaagtgggagaaggg
tgccagtatgaggttgatgtgtgccattccaacccttgtgccaatggagccacctgtgtg
gaaaatgcagactcttacaaatgcttatgcctgcccagctacggaggggaccgctgcgag
attgacgagcaggattgtgaggaggggtggactaagtttcagggcaactgttacctgcac
ttccccgagagagagacctggctggatgccgagcagcgctgccgagacctcagcgctcac
ctggtcagcatcatcaccccagaggaacagcactttgtcaactccaacggccaggactac
cagtggattgggctcaatgacaagacagtggagaatgacttccgctggatagacggcaca
ccactgcaatttgagaactggcggccgaaccagccggataactactttaactctggagaa
gactgtgtggtgatgatctggcacgagaacggccaatggaacgacgttccctgcaactac
cacctgcccttcacctgcaagactggcccagtctactgtggggcaccgccagaggtggag
aatgccacgatgttcggcagcaggcgggagcagtatactgtggggtccatcatccgctac
cagtgtaacccaggcctcctacagcgccacctgcctgtggtgcgctgcatggcagacgga
cagtgggagaagccacaggtggaatgcctgggcgcagtgccctcccccagtaacagaata
cagcgcagatcgatcagaaggcgaggagaatcaaccagcagcaaacgtcactaa
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