Oncorhynchus mykiss (rainbow trout): 110506294
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Entry
110506294 CDS
T07259
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03420
Nucleotide excision repair
omy04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110506294
09124 Replication and repair
03420 Nucleotide excision repair
110506294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omy04121
]
110506294
03400 DNA repair and recombination proteins [BR:
omy03400
]
110506294
Ubiquitin system [BR:
omy04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
110506294
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
110506294
TCR (transcription coupled repair) factors
Cul4-CSA complex
110506294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
110506294
NCBI-ProteinID:
XP_021441435
Ensembl:
ENSOMYG00000025442
UniProt:
A0A8C7RT01
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Position
26:complement(16410814..16440543)
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AA seq
1139 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRENRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGAVVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDSGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLNGEEVEETELPGFVDNLQTFYCGNVAHQQLIQITSGGVRLVM
QDSKALVSEWKEPQGRNISLAACNSSQVVLAVGRALYYLQILSGELKQISTVEMEHEVAC
LDITPLGEGGESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEASYY
LLCALGDGALFYFGLDLTTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIYS
SNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESP
RRICYQEVSQCFGVLSSRVEMQDASGTTAAVRPSASTQALSSSVSSSKLFPSSTSPHETS
FGEEVEVHSLLVVDQHTFEVLHAHQFLQSEYALSMVSCRLGRDLSVYFIVGTAMVYPEEA
EPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRT
ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD
DDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFSHGSLVLQNLGESS
TPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTERK
TEQATGFIDGDLIESFLDLGRAKMQEVISTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtataattacgtggtaacagcgcagaaaccgacggcagtcaatgcctgcatcacc
ggccacttcacctctgcggaggacctgaatctgctcatagctaaaaacacacgcctggag
atctatgtggtcacagcggaagggctccggcctgtcaaagaggtgggcatgtacggcaag
atcgccgtcatggagctcttcaggccaaagggcgaaagcaaggacctgctgttcattctc
actgccaaatacaacgcctgcatcctggagtacaaacagaacggggagagcatcgacatc
atcacccgcgcccacggcaacgtgcaggaccgcattgggcgtccctcggagacgggcatc
atcggcattgttgaccctgagtgccgcatgatcggcctgcggctgtacgacggcctattc
aaggtgatcccgttggaccgggagaaccgagaactcaaggccttcaacatccgcctggag
gagctgcaggtcatcgacgtccacttcctgtacggctgtcaggcgcccacagtctgcttc
atctatcaggaccctcaaggacggcatgtaaagacctacgaggtgtcgttgagggagaag
gagttcaacaaggggccgtggaaacaggagaacgtggaggcggaggcttctatggttatc
ccagtcccagaaccatttgggggggctataatcattggacaagaatccatcacctaccac
aacggggataaatacttggccatcgcacctcccaccatcaagcaaagcaccattgtctgt
cacaaccgcgtggaccccaacggctcgcgctacctgctgggggacatggagggccgcctg
tttatgctgctgctggagaaggaggagctgatggacggggccgtggtgctcaaggacctc
cgcgtcgagctgcttggagagacgtccattgcggagtgcttgacctacctggacaacggt
gtggtgtttgtgggttccagactgggtgactcccagttggtcaagctcaatgtggacagt
aacgactcagggtcgtacgtggcggtgatggagaccttcaccaacctggggcccatcgtg
gacatgtgtgtggtggacctggagagacagggacagggccagctggtcacctgctctgga
gcgttcaaggagggctccctcaggatcatccggaatggtatcgggatccacgagcacgcc
agcattgacttgccagggatcaaaggtttgtggccccttcgctcagaggctgggagggag
acagacgacatgctggtcctgtctttcgtcggccagacaagggtgctgatgctaaacggg
gaggaggtggaggagactgagctgcctggctttgtggacaacctgcagaccttctactgt
ggcaacgtggcccaccagcaactcatccagatcacgtcaggtggtgtgcgtctggtaatg
caggacagcaaggccctggtgtctgagtggaaggagccgcagggccggaacatcagcttg
gccgcatgtaactcctcccaggtggtgctggctgtgggccgcgccctctactatctccag
atcctctctggggaactcaaacagatcagcacggtggagatggagcatgaggtggcctgc
ctagacatcactcccctgggggagggcggagagtcgcccctctgcgccgtgggcctgtgg
acggacatatcggcccgggtcctcaagctgccctgcttcaccgccctgcacaaggagatg
ctcggaggagaaattatccctcgctccatcctgatgacgacgttcgaggccagctactat
ctgctgtgtgccctgggagacggagcgctcttctacttcggcctggacctgacgacaggc
gtgctgagcgagcggaagaaggtgactctgggcacccagcccacggtgctgaggaccttc
cgctccctgtccacctccaacgtgtttgcctgctccgaccggcccaccgtcatctactcc
tccaaccacaagctggtcttctccaatgtcaacctcaaggaggtcaactacatgtgtccg
ctcaactccgagggctaccccgacagtctggcgctggccaacaacagcactctcaccatc
gggaccatcgacgagatccagaagctccacattcgcacggttcccctctacgagtctccc
aggaggatctgttaccaggaagtgtctcagtgtttcggggtgctgtccagccgcgtggag
atgcaggacgccagcgggaccacggcagcggtgcgccccagcgctagcactcaggctctg
tctagcagcgtgagctccagtaagctgttccccagcagcacctccccacacgagacctcc
ttcggggaggaggtggaggtgcacagcctcctggtggtcgaccaacacaccttcgaagtg
ctccacgcccaccagttcctccagagtgagtacgccctcagcatggtgtcctgccgcctg
ggcagggacctctcggtctactttatcgttggcacagcaatggtctacccagaggaggcg
gagcccaagcaaggccgcatcatcgtcttccactacactgacggtaagctgcagacggtt
gcagagaaggaggtgaagggagccgtctactccatggtggagttcaatggcaaactgctg
gccagcatcaacagcacagtgcgtctgtacgagtggaccgctgagaaggagctgaggacc
gagtgtaaccactacaacaacatcatggcactctacctaaagaccaaaggtgacttcatc
ctggtgggagacctgatgaggtctgtgctgctgctggcctataaacccatggagggcaac
tttgaggagatcgcccgtgacttcaatcccaactggatgagtgctgtggagatcctggac
gatgacaacttcctgggggcggagaatgccttcaacctctttgtgtgtcaaaaagacagc
gcggccacgacagacgaggagcgacaacacctgcaggaggttggcgtgttccacctgggg
gagtttgtcaacgtcttctcccatgggtcactggtgctgcagaacttgggcgagagctcc
acccccacgcagggctccgtgctcttcggcaccgtcaacggcatgatcggtcttgtgacc
tctctgtctgagggctggtacagcctgctgctggacctgcagaaccgactcaacaaggtc
atcaagagcgtgggcaagatcgagcacagcttctggaggtccttccatacggagcgtaag
actgagcaggccacgggcttcatcgacggggacctcatcgagagcttcctggacctgggc
cgcgccaagatgcaagaggtgatcagcacgctacagattgacgacggcagcggaatgaag
cgcgaggccaccgtggacgaggtcataaagattgtggaggagctgacaagaatccactag
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integrated database retrieval system
