Oncorhynchus mykiss (rainbow trout): 110506479
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Entry
110506479 CDS
T07259
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110506479
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
110506479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_16
TPR_CcmH_CycH
TPR_8
TPR_12
TPR_17
TPR_10
TPR_11
TPR_7
ARM_TT21_5th
TPR_6
TPR_Slam
ARM_TT21_4th
ANAPC3
TPR_EMC2
Motif
Other DBs
NCBI-GeneID:
110506479
NCBI-ProteinID:
XP_021441792
Ensembl:
ENSOMYG00000024748
UniProt:
A0A8C7RLU5
LinkDB
All DBs
Position
26:25723228..25732113
Genome browser
AA seq
1166 aa
AA seq
DB search
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQTKTEDF
VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKELITQATLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSTNNIPALLGKACISFNKKDYR
GALAYYKKALRTNPGCPAEVRLGMGHCFVKLSKLEKARLAFGRALELNSKCVGALVGLAV
LELNSKEPDSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSTFVLPFFGLGQMYVYRRDKENA
AQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASLER
AKAEGEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQND
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHK
GYYREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLKKFYKHQNTEVL
LYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATLVLKDEKSNLKAVL
SAVKELELAHRYFSYLAKAGDKMRFDLVLASTEARQCSDLLSQAQYHVARARKQDEEEKE
IRAKQDQERDFLRQQMHKEQEEKRTKLEEDQKKLLEQRAMYVEKTKGLLSFADGMKEERK
EKKKGGGRRKKGDFDEFVNDGSDEDLPVRRRKKRKGGSGSEEEGRRKRRRPNKGGDDGSD
DEEGGSRPKKQRKPRAGGKKMQKYEPVPPSLKGKIKSKAIISSSDSSSDEDGLKIAEDRN
PRDSGSGSDNEGGHKKRIASDSESDGGRNRSGSEAGSPQRSGNSVSDSGSGAGSPQRSGN
SVSDSGSERPVKRKRVQQQSDSEQSDNESKRSRSGSEKESRPGSPAAASGSEAGSPACSP
HRSDNGSEPGGSAKEASNHGSGSDSD
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggggatcaattgaaatccccttacgggacaccgatgaggtcattgagcttgat
ttcgaccagctgccagaaggagatgaggtaatcagtatcctgaaacaggagcatacacag
ttgcacatatggattgctcttgctctggagtattacaaacagacgaagacggaggacttt
gtcaagctgctggaggcggcccgtatcgatgggaacctagactacagagaccatgagaag
gaccagatgacctgtctggacaccttggcagcctactatgtccagcaggcacgtaaagag
aagaacaaagatgccaagaaggagctcatcactcaggccaccctgctctacaccatggca
gacaagatcatcatgtacgaccagaaccacttgttgggaagagcctgtttctgcctgctg
gagggggacaaaatggaccaggctgatgctcagttccactttgtcttgaaccagtctacc
aataacatccctgctctacttggtaaagcttgcatctccttcaataagaaggattacagg
ggagcattggcctactacaagaaggctctacgcacaaaccctggatgtcctgccgaggtg
aggctggggatgggccactgctttgtcaagctcagtaagctggagaaggcccgtctggcc
tttggccgggccctggagctcaactccaagtgtgtgggagcccttgtgggcttggctgtg
ctggagctcaacagcaaggagcccgactccatcaagaatggagtgcagctcttatccaga
gcctacaccatcgaccccagcaaccccatggtgctcaaccacctggctaaccacttcttc
ttcaaaaaggactacagtaaagtgcagcacctggctctccatgcatttcacaacacagag
gtggaagcaatgcaggctgagagctgctaccagttggcccgctcctttcatgtacaggag
gactatgaccaggccttccagtactactaccaggccacccaatttgcctcgtctaccttt
gtgctgcctttctttggcctggggcagatgtacgtgtaccgtagagacaaggagaatgca
gcccagtgttttgagaaggtcctaaaggcctaccccaacaactatgaaaccatgaagatc
ctgggatctctttatgctacttcagatgatcaggaaaagagagacattgccaaaggtcat
ctgaagaaggtaaccgagcagtaccctgatgacgttgaggcctggatcgagctggctcag
atcctggagcagaccgacatccagggcgccctctctgcctacggcacggccacccgcatt
ctgcaggagaaggtccaggctgacgtcccccctgagatcctcaacaacctgggggctctc
cacttcagactggggaacctgggagaggccaagaaatacttcctggcctctttggagcgg
gccaaagctgagggagagcatgacgagcattactacaacgccatctctgtcaccacctct
tacaacctagccaggctctacgaggccatgtgcgaattccacgaggcggagaaactctac
aagaacatcctgagggaacatcccaactacgttgactgttacctgcgacttggcgcaatg
gctcgtgacaaaggaaacttctatgaagcttccgactggttcaaagaggctctgcagatt
aatcaggatcacccagacgcctggtccctgattgggaatctccacttggccaagcaggag
tggggtccgggtcagaagaagtttgagcgtatcctcaagcagccgtccactcagaacgac
acctactccatgctggccctgggcaacgtgtggctccagaccctgcaccagcccaccagg
gaccgggagaaggaaaagagacatcaggatcgagccctggccatttacaaacaggtccta
cgaaacgactccaagaacctttacgctgccaacggcataggtgccgtcctggcccataag
ggctactaccgagaggcccgtgacgtgtttgcccaggtgagagaagccacagctgatatc
agtgatgtctggctcaacctggcccacatctacgtggagcagaaacagtacatcagcgct
gtgcagatgtacgagaactgtctgaagaaattctacaagcatcagaacactgaggtgctg
ctgtacctggctcgggcactcttcaaatgcgggaaactccaggagtgcaaacagactctg
ctgaaggcacgtcacgtggcccccagtgacacggtgctgatgttcaacgtggccctggtg
ctgcagaggctggccactctggtgctgaaggatgagaagagtaacctaaaggctgtactc
agtgctgtcaaagagctggagctggcccaccggtatttcagctaccttgccaaggcaggt
gacaagatgaggttcgacctagtgcttgcctctactgaggccaggcaatgctctgacctg
ctgagtcaggctcagtatcacgtggctcgggccaggaagcaggacgaggaggagaaggag
atccgggccaagcaggatcaggagagggacttcctgcgccaacagatgcataaagaacag
gaggagaagagaaccaagctggaagaggatcagaagaagctgctggagcagagagccatg
tacgtggagaagaccaagggtctgctctccttcgccgatggaatgaaggaggaaaggaaa
gagaagaagaaaggtggcggccgacgcaagaaaggagactttgatgagtttgtcaacgat
ggctctgatgaggacctgccagtgagaaggaggaagaagaggaagggtggcagcggaagt
gaggaggagggccgcaggaagaggaggagacccaacaaagggggtgacgatggcagtgat
gatgaggaaggaggctcacggcccaaaaagcaacgcaaacccagagcgggcggcaagaag
atgcaaaagtacgagcctgtgccaccatctctcaaaggcaagatcaagtcgaaggccatc
atctcatcctccgactcttcatcagacgaggatggactgaaaattgctgaagacagaaac
cccagagacagtggttcaggctctgataacgagggcggacacaagaagcgcatcgcctcc
gacagtgagtccgacgggggccggaaccgctctggcagcgaagctggaagcccccaacgc
tccggaaactcggttagtgactccggcagcggcgctggaagcccccaacgctccggaaac
tcggttagcgactcaggcagcgaacgtccagtgaagaggaagagagtgcagcagcagtct
gactcagagcagtctgataacgagagcaagaggagccgctctgggtcggagaaggagtcc
cgacctggctcaccggccgcagcctctggctctgaagcaggttctccggcgtgctcccca
caccgctccgacaacggatcagaaccagggggctctgccaaagaggcctccaaccacggc
tctggctctgacagtgactga
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