Oncorhynchus mykiss (rainbow trout): 110506516
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Entry
110506516 CDS
T07259
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110506516 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110506516 (dhx38)
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110506516 (dhx38)
Spliceosome [BR:
omy03041
]
Complex C
Other components
Step II factors
110506516 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
Toxin_trans_Wo
T2SSE
nSTAND3
nSTAND_NTPase5
Sigma54_activ_2
AAA_30
AAA_16
Flavi_DEAD
PhoH
AAA_7
Motif
Other DBs
NCBI-GeneID:
110506516
NCBI-ProteinID:
XP_021441853
Ensembl:
ENSOMYG00000037744
UniProt:
A0A8C7TMW9
LinkDB
All DBs
Position
26:26600513..26618182
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AA seq
1262 aa
AA seq
DB search
MEDDASLHRLEGSDPTAQVCGLIVKKKSAAVEPHVFRAPTPRTSLLGLDLLAAQKRKERE
GKEQAEADSDDRNNKKSKVSSYKDWEEGKSDSGSDEEDKDEEDQGGRKESSRKYRVTGSE
TPSNPGGVSEEFRRKHQQREKDRREHGMYASSKEDKNREREKDRERIRDTDRDRRGERDE
RERSNSRGSSRSERGDRSERSERSQREGWSSERISRGSKREEPPTPQTRPKDGTPSRTSW
DEDDSGYASSRRSHWESPSPAPSHKDSDKSERSERSPRSGRESERKDKSVRGRYPDDTPL
PTPSYKYNEWANDRKHLGSTPRLSRGKGKNEGEDGIAFDNDDEKQQWEEDQKQADRDWYM
MDEGYDEFHNPLTSTSEDYVKKREQILQKQTQKRISAQRRQINEDNERWETNRMLTSGVV
QRLEVDDDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGS
QLVRKHREQKERKKAQQKHWELAGTKLGDIMGIKKTEDGDSSGGKPVGEDGKVDYRTDQK
FADHMKDKSEASSEFAKKKTLLEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQ
LTQYLHEDGYTSYGMVGCTQPRRVAAMSVAKRVSEELGSNLGEEVGYAIRFEDCTSEKTV
IKYMTDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRSDLKLIVTS
ATMDSDKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMGGDIL
IFMPGQEDIEVTSDQIVERLEDLESAPPLTVLPIYSQLPSDLQAKIFQKAPDGVRKCIVA
TNIAETSLTVDGIMFVVDAGYCKLKVFNPRIGMDALQVYPISQANANQRAGRAGRTGPGQ
CYRLYTQSAFKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSM
YQLWILGALDNTGSLTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIF
YRPKGREEESDQVREKFSVPESDHLTYLNVYLQWKNNNYSSIWCNEHFIHTKAMRKVREV
RSQLKDIMVQQRMNLVSCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPT
SSLFGMGYTPDYITYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRMENRRR
AKEEITNMEEEMSLAEQQLRSRREDQDRKSNVGSVRAVKICTPGRKEEAPMTPKRTPARF
GL
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgatgcgtcgctgcaccgactggagggcagtgacccaactgcgcaggtctgc
gggttgatcgtgaagaagaagagtgcagcagtagagcctcatgtctttcgtgcacccact
ccacgcacctctctcctgggcctggatctgctggcagctcaaaagagaaaggagcgagag
ggcaaggagcaggctgaggctgacagcgatgacaggaataacaagaaatccaaggtgtcc
tcctacaaggactgggaggaagggaaaagtgattctgggtctgatgaagaagacaaagac
gaggaggaccaaggtggtagaaaagagagcagcaggaaataccgtgtgactggctcagag
acaccctctaaccctggaggggtcagcgaagagttccgtcgcaaacaccagcagagggag
aaagaccggcgtgagcatggaatgtatgcctcctccaaagaggacaagaacagagagagg
gagaaggacagagagagaatcagagatacggacagagatcgaaggggtgaaagagatgag
cgggagcgcagtaacagccgcggcagcagccggtcggagcgtggagaccgcagtgagagg
agtgagcgctcacagagagaaggctggtcctccgaacgcatcagccggggtagcaagaga
gaggagcctccaacgccccagacacgccccaaagatggcactccctcgcgcaccagctgg
gatgaggatgacagcggctatgccagctcacgccgttcccactgggaatctccctctcct
gccccttcacacaaggattctgacaagtctgaacggtcggagcgcagcccccgctctgga
cgggagagcgagaggaaggacaagtcagtcagaggccggtatcctgatgacacgcccctt
cccaccccatcatacaagtacaatgaatgggccaatgacaggaagcacttgggctccact
cctcgtctgtcccgtgggaaaggtaagaatgaaggagaggatggcattgcctttgataat
gatgatgagaagcagcagtgggaagaggaccagaagcaagcggacagagactggtacatg
atggacgaaggctatgatgagttccacaacccactgacctccacctctgaggattatgtg
aagaagagagagcagatcctgcagaagcagacacagaaacgcatctctgcccagagacga
cagatcaatgaggataatgagcgctgggagactaaccgtatgctgaccagtggagtggtc
cagaggctggaggtggatgatgactttgaggaggacaacgctgccaaggttcacctgctg
gttcacaacctggtccctcccttcctggacgggaggatagtcttcaccaagcagccggag
cctgtcatccctgtgaaagacgctacctctgacatggccatcatctcccgcaagggcagc
cagctggtccgcaagcaccgcgagcagaaggaacgcaagaaggctcaacagaaacactgg
gagctggcaggcaccaagctgggtgacattatgggcatcaagaagaccgaggacggggat
agctctgggggcaagccagtgggcgaggatggcaaggtggactacagaacggaccagaag
tttgcagaccacatgaaagataagagtgaggccagcagtgagtttgctaagaagaagacc
ctgctggagcagaggcagtatctgcccatcttcgctgtgaggcagcagctgctcaacatc
atcagggacaacagcattgtgatcgtggtgggggagacgggcagtgggaagaccacccag
ctgacccagtaccttcacgaggacggctacaccagttacggcatggtgggctgcacccag
ccccgcagagtggcagccatgagcgtggccaagagagtcagcgaggagctgggcagcaac
ctgggagaggaggtgggttatgcgatccgttttgaggactgtacgtcggagaagactgtg
ataaagtacatgacagacggcatcctgctgagagagtctctcagggagtccgatctggac
cactacagtgccgtcatcatggacgaggcccacgaacgctccctcaatacagacgtgctg
ttcggcctgctacgagaggttgtatcgaggcgttctgacctcaagctgatagtcacctca
gccaccatggactctgacaaatttgctgcatttttcggcaacgttcccatattccacatt
ccaggaagaacattccctgtagacatcttattcagcaagactccccaggaagactatgtg
gaggcagcagtgaagcaggccctacagatccaccttagtggtatggggggagacatcctc
atcttcatgcctggccaggaggacatcgaggtgacgtcagaccagattgtggagcgtctg
gaggatctggagagcgcccctcctctgactgtactgcccatctactcccagctgccctct
gacctccaggccaagatcttccagaaggctccagatggtgtgaggaagtgcatcgttgcc
accaacattgccgagacctccctgactgtggatggtatcatgtttgttgtggatgctgga
tactgcaaactcaaggtgttcaaccctcgcattggcatggatgccctgcaggtgtacccc
atcagccaggctaacgccaatcagcgtgcgggcagagcaggacgtacagggccgggccag
tgttacaggctctacacccagagcgccttcaagaatgagatgttgaccaccaccatccca
gagattcagcggaccaacctggccaacgtggtgctgctgctcaaatccctgggggtccag
gacctgctgctcttccacttcatggaccccccgcctgaggacaacatgctgaactccatg
taccagctgtggatcctgggggccctggacaacacaggttccctgacgcccactgggagg
ctgatggtggagttccctctggacccggctctgtccaagatgctgatcgtatcatgtgac
atgggctgcagtgctgacatcctcatcatcgtctccatgctgtctgtaccggccatcttc
tacaggcctaagggtcgtgaggaggagagtgaccaggtgagggagaagttctctgtccca
gagagtgaccacctgacctacctgaacgtctacctgcagtggaagaacaacaactactcc
agcatctggtgcaacgaacacttcatccacaccaaggccatgcgaaaggtgcgcgaggtg
cgctcccagctcaaagacatcatggtgcagcagaggatgaacctggtgtcctgtggctca
gactgggacatcatcaggaagtgtatctgtgctgcctacttccaccaggcagccaagctg
aagggcataggggagtatgtgaacgtgaggacaggcatgccctgccacctccatcccacc
agctctctgtttggcatgggctacaccccagactacatcacctaccacgagctggtcatg
accaccaaggagtacatgcagtgtgtgactgcggtggatggggagtggctggctgagctg
gggcccatgttctacagcgtcaaacaggcagggaagagcaggatggagaaccggcggcgg
gccaaggaggagatcactaacatggaggaggagatgtctctggcggagcagcaactgagg
agcaggagagaggatcaggacaggaagagtaacgtgggcagcgtcagggctgtgaaaatc
tgcaccccaggaaggaaggaggaggcacccatgaccccaaagcgcaccccagctcgtttt
gggctctag
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integrated database retrieval system
